BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G43020.1
Length=2145
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494701 jgi|Araly1|494701|fgenesh2_kg.8__517__AT5G43020.1 3205 0.0
> Ahg494701 jgi|Araly1|494701|fgenesh2_kg.8__517__AT5G43020.1
Length=2080
Score = 3205 bits (1735), Expect = 0.0
Identities = 1974/2089 (94%), Gaps = 17/2089 (1%)
Strand=Plus/Plus
Query 1 ATGCTTCTTCGATGTAACTTACCCAtttctgggtttcttctcttctgtttcctctttacc 60
||||||||||| ||||||||||||||||||||||||||||||||||| ||| |||| |||
Sbjct 1 ATGCTTCTTCGTTGTAACTTACCCATTTCTGGGTTTCTTCTCTTCTGCTTCTTCTTCACC 60
Query 61 attgttgcttcttcttcttcttcCTCCAACCACAC-AAAGCGCGTGTTTCATT-CTCACC 118
||||||||||||||||||||||||| |||| ||| ||| | ||||||||||| | ||||
Sbjct 61 ATTGTTGCTTCTTCTTCTTCTTCCTTAAACCGCACTAAA-CACGTGTTTCATTAC-CACC 118
Query 119 GTGACGTTTCTGCTTTGTTACGTTTTAAATCCAAAGCTGATTTATGGAACAAGATAAACA 178
||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 119 GTGACGTTTCTGCTTTGTTACGTTTCAAATCCAAAGCTGATTTATGGAACAAGATTAACA 178
Query 179 CGAGCTCTCATTTTTGTCAATGGTGGGGTGTTACGTGTTATGGAAACAGAGTTGTTCGTT 238
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 CGAGCTCTCACTTTTGTCAATGGTGGGGTGTTACGTGTTATGGAAACAGAGTTGTTCGTT 238
Query 239 TGGTTATTGAAGATCTTTATCTTGGAGGGCGACTCATTCCTGACTCAGTTAATAAACTCG 298
|||||||||||||||||||||| ||||| |||||| ||||||||||||||||||||||||
Sbjct 239 TGGTTATTGAAGATCTTTATCTCGGAGGTCGACTCGTTCCTGACTCAGTTAATAAACTCG 298
Query 299 ACCAGCTTCGAGTTCTGAGTCTCAAGAACACTTCCTTAACCGGACCGT-TACCAGATTTC 357
|||||||||||||||| |||||||| |||||||||||||||||||| | |||||||||||
Sbjct 299 ACCAGCTTCGAGTTCTCAGTCTCAAAAACACTTCCTTAACCGGACC-TATACCAGATTTC 357
Query 358 TCCGGTTTGGTTAATCTCAAATCATTATTCCTCGATCACAACTCTTTTTCCGGTTCGTTT 417
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 358 TCCGGTTTGGTTAATCTCAAATCGTTATTTCTCGATCACAACTCTTTTTCCGGTTCGTTT 417
Query 418 CCTCTCTCGGTTCTCGCTTTTCACCGGTTAAGAACTCTCGATTTCTCCTTCAATAACCTC 477
||||||||||||||||| ||||||||||||||||||| ||||||||||| || ||||||
Sbjct 418 CCTCTCTCGGTTCTCGCGCTTCACCGGTTAAGAACTCTTGATTTCTCCTTTAACAACCTC 477
Query 478 ACCGGTCCAATCCCAT-CCGGTTTAGTTCTCTCCGACCGGTTGATTTATCTCCGACTTGA 536
|||||||||||||| | ||||||||||||||||||||||||||||||||||||| || ||
Sbjct 478 ACCGGTCCAATCCC-TCCCGGTTTAGTTCTCTCCGACCGGTTGATTTATCTCCGTCTCGA 536
Query 537 TTCGAATCGGTTCAACGGTCCCGTCCC-GCCTTTAAACCAATCCACGCTTCATACATTCA 595
|||||| ||||| |||||||||||||| | || ||||||||||| |||||||||||||||
Sbjct 537 TTCGAACCGGTTTAACGGTCCCGTCCCTG-CTCTAAACCAATCCTCGCTTCATACATTCA 595
Query 596 ATGTTTCGGTTAACAACTTAACCGGTGCTGTACCGGTGACAACCGTTCTGTTACGATTCG 655
||| ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 596 ATGCTTCGGTTAACAACTTAACCGGTGCTGTACCGGTAACAACAGTTCTGTTACGATTCG 655
Query 656 GTATTTCTTCATTTCTCAAAAACCCTAATCTCTGCGGTGAGATTGTTCACAAAGAATGCA 715
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 656 GTATTTCTTCATTTCTCAAAAACCCTAATCTCTGCGGCGAGATCGTTCACAAAGAATGCA 715
Query 716 ATCCGAGAGCCAAATTCTTCACTCCGGTAACGGCGGCGCCGTCACCGAAGATGGTTCTCG 775
|||| ||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 716 ATCCAAGACCCAAATTCTTCACTCCGGTAACGGCGGCGCCGCCACCGAAGATGGTTCTCG 775
Query 776 GTCAAATAGCGCAAATAGGCGGCGCAAGATTATCCCGGCCAAGTCAAAACAAACATTCAC 835
||||||| |||||||| | || ||||||||||||||||||| |||||||||||||||||
Sbjct 776 GTCAAATCGCGCAAATCGAAGGAGCAAGATTATCCCGGCCAAATCAAAACAAACATTCAC 835
Query 836 GATTTTTTGTGATTCTCGGTTTTATCTCCGGCGCTTTTATCCTCTTCATCTCCGTCGCGT 895
| || |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 836 GGTTCTTTGTGATTCTCGGTTTTATCTCCGGCGCTTTTATCCTATTCATCTCCGTCGCGT 895
Query 896 GCCTTATCGGCGCAGTGAAGAGACGAAGAAGCAAAACCGAGAAACAAAAGGGGAAAGAAT 955
|||| ||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 896 GCCTAATCGGCGCAGTGAAGAGACGAAGAAGCAAAAACAAGAAACAAAAGGGGAAAGAAT 955
Query 956 CAACGGCGGTTGTGACATTTGACGCGGCGGAGACGGCGGAAGTAGCGGCGGCGATAGAAC 1015
|||| || || || ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 956 CAACTGCAGTAGTCACATTCGACGCGGCGGAGACGGCGGAAGTAGCGGCGGCGATAGAAC 1015
Query 1016 AAGAGAGTGAGATAGAAGAGAAAGTGAAGAAGCTACAAGCGACAAAAAGTGGGAGTTTAG 1075
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1016 AAGAGAGTGAGATAGAAGAGAAAGTGAAGAAGCTACAAGCGACAAAAAGTGGGAGTTTAG 1075
Query 1076 TATTCTGTGCGGGTGAGGCACACGTTTATACGATGGACCAACTAATGACAGCATCAGCTG 1135
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1076 TATTCTGTGCGGGTGAGGCACACGTTTATACGATGGACCAACTAATGACAGCATCAGCTG 1135
Query 1136 AGTTATTAGGTCGAGGAACAGTGGGGACCACTTATAAAGCGTTGCTTGATAGCCGTTTGA 1195
||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1136 AGTTATTAGGTAGAGGAACAGTGGGGACCACTTATAAAGCATTGCTTGATAGCCGTTTGA 1195
Query 1196 TCGTCACGGTGAAGAGATTAGATGCCATTAGATTAGCGGGTGTAGGGAGAGACAAATTTG 1255
||||||| || ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1196 TCGTCACTGTAAAGAGATTAGATGCCATTAGATTAGCGGGTGTAGGGAGAGAGAAATTTG 1255
Query 1256 AGCATCACATGGAATCAGTTGGTGCTTTAGGGCATCCGAATTTGGTTCCACTCAGAGCTT 1315
||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1256 AGCGTCACATGGAATCAGTTGGTGCTTTAGGGCATCCGAATTTGGTACCACTCAGAGCTT 1315
Query 1316 ATTTTCAGGCCAAGGAAGAGAGGTTATTGATTTATGATTATTTGCCAAATGGCAGTCTCT 1375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1316 ATTTTCAGGCCAAGGAAGAGAGGTTATTGATTTATGATTATTTGCCAAATGGCAGTCTCT 1375
Query 1376 CGTCTCTTGTCCACGGTACAAAATCGTCGAGGGCAACGCCATTGCATTGGACATCTTGTT 1435
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 1376 CGTCTCTTGTCCATGGTACAAAATCGTCGAGGGCAACGCCATTGCATTGGACATCATGCT 1435
Query 1436 TGAAGATAGCAGAAGACGTCGCTCAGGGTCTCTCTTACATCCACCAAGCATGGCAGCTAG 1495
|||||||||||||||| || ||||||||||||||||||||||||||||| |||||||| |
Sbjct 1436 TGAAGATAGCAGAAGATGTGGCTCAGGGTCTCTCTTACATCCACCAAGCGTGGCAGCTTG 1495
Query 1496 TTCACGGCAATCTCAAATCCTCTAATGTCCTTCTTGGACAAGACTTTGAAGCTTGTATTG 1555
|||| ||||||||||||||||||||||||||||| |||| |||||| |||||||||||||
Sbjct 1496 TTCATGGCAATCTCAAATCCTCTAATGTCCTTCTCGGACCAGACTTCGAAGCTTGTATTG 1555
Query 1556 CTGATTACTGTCTCGTTGCTCTTGCAACAAACCCTCCTCTAACATCCAATGACGGTCAAG 1615
| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1556 CCGATTACTGTCTCGTTGCTCTTGCAACAAACCCTCCTCTAACATCTAATGACGGTCAAG 1615
Query 1616 AAGACGCGGATGCAGCAGCCTATAAACCCCCTGAAGCTCGACACAAGAGTCTAAATTATC 1675
|||||||||||||||| || |||||| ||||||||||||||||||||||| || ||||||
Sbjct 1616 AAGACGCGGATGCAGCGGCTTATAAAGCCCCTGAAGCTCGACACAAGAGTGTAGATTATC 1675
Query 1676 AATCGGTTAAGGCTGATGTATACTCCTTTGGGATTCTTCTCTTGGAGCTTTTGACAGGGA 1735
|||| ||||| ||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 1676 AATCTGTTAAAGCTGATGTATATTCTTTTGGGATTCTTCTCTTGGAGCTTTTGACAGGGA 1735
Query 1736 AGCAACCTTCGAAGATTCCGGTTTTGCCTTTGGATGAGATGATCGAATGGGTGAGGAAAG 1795
||||||||||||||||||||||||| || |||||||||||||| ||||||||||||||||
Sbjct 1736 AGCAACCTTCGAAGATTCCGGTTTTACCGTTGGATGAGATGATTGAATGGGTGAGGAAAG 1795
Query 1796 TGAGAGAGGAAGGTGAGAAGAAGAATGGGAATTGGAGAGAAGATAGGGATAAATTCGGAA 1855
||||||||||||||||||||||||||||||||||| |||| ||||| |||||||||||||
Sbjct 1796 TGAGAGAGGAAGGTGAGAAGAAGAATGGGAATTGGCGAGAGGATAGAGATAAATTCGGAA 1855
Query 1856 TGTTGACTGAAGTTGCGGTAGCTTGTAGCTTAGCATCGCCGGAACAGAGACCGACGATGT 1915
|||||||||||||||||||||||||||||||| ||||||| ||||||||||| |||||||
Sbjct 1856 TGTTGACTGAAGTTGCGGTAGCTTGTAGCTTAACATCGCCCGAACAGAGACCAACGATGT 1915
Query 1916 GGCAAGTGTTGAAAATGTTGCAAGAGATTAAAGAAGCGGCTGTGATGGAAGAGTGTGAAC 1975
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1916 GGCAAGTGTTGAAAATGTTGCAGGAGATTAAAGAAGCGGCTGTGATGGAAGAGTGTGAAC 1975
Query 1976 TTGTTATGGATTCTGCTAATTCTGAAAGCTCTTAATTAATTAAGGACAGTCATTTTATTT 2035
|||||||||||||| | |||||||||||||| ||||||| ||||||| |||||||||
Sbjct 1976 TTGTTATGGATTCTTCCAATTCTGAAAGCTCCTAATTAA----GGACAGTAATTTTATTT 2031
Query 2036 TTTCTTAACTAAATCTCTCTT-CATGTCTCT--CACTAATCTTAAAACT 2081
||||| ||||||||||||||| ||||||||| ||||||||||||||||
Sbjct 2032 TTTCTCAACTAAATCTCTCTTTCATGTCTCTTTCACTAATCTTAAAACT 2080
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80713229155
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5