BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G43050.1
Length=696
Score E
Sequences producing significant alignments: (Bits) Value
Ahg948905 jgi|Araly1|948905|scaffold_800792.1 704 0.0
> Ahg948905 jgi|Araly1|948905|scaffold_800792.1
Length=523
Score = 704 bits (381), Expect = 0.0
Identities = 455/490 (93%), Gaps = 7/490 (1%)
Strand=Plus/Plus
Query 74 GGATGGCACATTCTTTGAGTTTCATCTCCACCAACTTGAACAGTTTAGTCCTTAA-C--C 130
||||||||||||||||||||||||| || ||||||||||||||| |||| ||||| | |
Sbjct 19 GGATGGCACATTCTTTGAGTTTCATTTCGACCAACTTGAACAGTGTAGTTCTTAATCATC 78
Query 131 ATCATCAGT-GCCAGAGTTTCGGAACGTTT-GTGTCGTCGCCATTTAAACGAAAGAGGAG 188
||||||||| | | ||||| |||||| ||| ||||||||||||||||||| ||||||||
Sbjct 79 ATCATCAGTGGAC-GAGTTACGGAAC-TTTGGTGTCGTCGCCATTTAAACCTAAGAGGAG 136
Query 189 ATTTGCAAGAAGCATTAGAGCTTTACAAGAGACTGAAGGTCCAACGCCAAGAAGATTGAT 248
|||| ||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 137 ATTTTCAAGAAGCATTAGAGCTTTGCAAGAGACTGAAGGTCCAACTCCAAGAAGATTGAT 196
Query 249 AGACATTATAAGATCTGTTCCTGAAATCTCTAGGAATTACTTCAAGAAGCCTTCAAGAAG 308
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 197 AGACATTATAAGATCTGTTCCTGAAATCTCTAGGAATTACTTCAAGAAGCCTTCAAGAAG 256
Query 309 AACGCTTTTTGGAGGAATCTCGTTGTTAGGTGGCTTTTATGTCGCGCAGACTATCTCTCT 368
||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 257 AACGCTTTTCGGAGGAATCTCGTTGTTAGGTGGGTTTTATGTCGCGCAGACTATCTCTCT 316
Query 369 CTCGTTTGGAGCATTGGGAGTGAACGATGTTATTGCTGCGGTTCTATGCGTTCTTTTGAC 428
||||||||||| |||||||||||||||||||| ||||||||| |||| |||||||||||
Sbjct 317 GTCGTTTGGAGCTTTGGGAGTGAACGATGTTATCGCTGCGGTTTTATGTGTTCTTTTGAC 376
Query 429 AGAGTATGTGACAAGATTCTATTATAGCCGCACCACAGTCACATTTCCTATTGCTCTGCT 488
|||||||||||| |||||||| |||||||| |||| ||||||||||| |||||||||||
Sbjct 377 AGAGTATGTGACTAGATTCTACTATAGCCGTACCATGGTCACATTTCCGATTGCTCTGCT 436
Query 489 CAATAATTTCAAGATGGGTTTCACTTATGGTCTCTTCATTGACGCCTTCAAGCTGGCTAG 548
|||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 437 TAATAATTTCAAGATGGGTTTCACTTATGGTCTCTTCATTGACGCATTCAAGCTAGCTAG 496
Query 549 CTAACTGTTT 558
|||| |||||
Sbjct 497 CTAAGTGTTT 506
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25580477307
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5