BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G43060.1
Length=1716
Score E
Sequences producing significant alignments: (Bits) Value
Ahg948904 jgi|Araly1|948904|scaffold_800791.1 2254 0.0
Ahg473866 jgi|Araly1|473866|fgenesh2_kg.1__3820__AT1G47128.1 996 0.0
> Ahg948904 jgi|Araly1|948904|scaffold_800791.1
Length=1433
Score = 2254 bits (1220), Expect = 0.0
Identities = 1364/1435 (95%), Gaps = 3/1435 (0%)
Strand=Plus/Plus
Query 28 TCTTCTTCTTCAAACAAAAAATGGGTTTCTTAAAGTTATCTCCAATGATCCTTCTCCTAG 87
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1 TCTTCTTCTTCAAACAAAAAATGGGTTTCTTAAAGTTATCTCCGATGATCCTTCTCCTAT 60
Query 88 CAATGATCGGCGTTTCATATGCCATGGACATGTCAATCATCTCCTACGACGAAAACCACC 147
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 61 CAATGATCGGCGTTTCATATGCCATCGACATGTCAATCATCTCCTACGACGAAAACCACC 120
Query 148 ACATCACCACCGAGACCAGCCGTAGCGACTCGGAGGTTGAGAGAATCTACGAAGCGTGGA 207
||||| |||||| | | |||||||||||| |||||||||||||||||||||| |||||||
Sbjct 121 ACATCTCCACCGTGTCAAGCCGTAGCGACGCGGAGGTTGAGAGAATCTACGAGGCGTGGA 180
Query 208 TGGTGGAACACGGGAAGAAGAAGATGAATCAAAACGGTCTTGGTGCAGAGAAAGATCAAA 267
|||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |
Sbjct 181 TGGTGGAACACGGGAAGAAGAAGATGAACCAAAACGGTCTTGGTGCAGAGAAGGATCAGA 240
Query 268 GATTCGAGATCTTTAAAGATAATCTTCGTTTCATCGATGAACATAACACCAAAAACCTCA 327
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GGTTTGAGATCTTTAAAGATAATCTTCGTTTCATCGATGAACATAACACCAAAAACCTCA 300
Query 328 GTTATAAACTTGGTTTAACCCGGTTTGCTGATTTAACCAATGAGGAGTACCGATCTATGT 387
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 301 GTTATAAACTTGGTTTAACCCGGTTTGCTGATTTAACCAATGATGAGTACCGATCTATGT 360
Query 388 ACCTTGGTGCTAAACCGACCAAGAGGGTTTTGAAAACCAGTGATCGGTATCAGGCGCGTG 447
||||||||||||||||| ||||| |||||||||||||||||||||||| |||||||||
Sbjct 361 ACCTTGGTGCTAAACCGGTGAAGAGAGTTTTGAAAACCAGTGATCGGTATGAGGCGCGTG 420
Query 448 TTGGTGACGCGCTTCCTGATTCGGTTGACTGGAGAAAAGAAGGTGCCGTCGCTGATGTTA 507
|||||||||| ||||||||||| ||||||||||| ||||||||||||||||| |||||||
Sbjct 421 TTGGTGACGCACTTCCTGATTCCGTTGACTGGAGGAAAGAAGGTGCCGTCGCCGATGTTA 480
Query 508 AAGATCAAGGAAGCTGTGGGAGTTGTTGGGCATTCTCAACTATTGGAGCAGTGGAAGGAA 567
|||||||||||||||||||||||||||||||||| ||| ||||||| |||||||||||||
Sbjct 481 AAGATCAAGGAAGCTGTGGGAGTTGTTGGGCATTTTCATCTATTGGTGCAGTGGAAGGAA 540
Query 568 TAAACAAGATTGTGACAGGAGATTTAATATCTTTGTCTGAACAAGAATTGGTTGATTGTG 627
|||||||||||||||| ||||||||||| || ||||||||||||||||||||||||||||
Sbjct 541 TAAACAAGATTGTGACTGGAGATTTAATTTCGTTGTCTGAACAAGAATTGGTTGATTGTG 600
Query 628 ACACATCTTATAACCAAGGATGTAATGGTGGTTTAATGGACTATGCGTTTGAGTTTATTA 687
||||||||||||||||||| |||||||||||||| ||||| |||||||||||||||||||
Sbjct 601 ACACATCTTATAACCAAGGTTGTAATGGTGGTTTGATGGATTATGCGTTTGAGTTTATTA 660
Query 688 TCAAAAATGGTGGTATTGATACCGAAGCGGATTATCCTTACAAGGCTGCTGATGGTCGTT 747
| |||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 661 TAAAAAATGGCGGTATCGATACCGAAGCGGATTATCCATACAAGGCTGCTGATGGTCGTT 720
Query 748 GTGACCAGAACAGGAAAAATGCTAAGGTTGTTACCATTGATTCATATGAAGATGTCCCTG 807
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 721 GTGACCAGAACAGGAAAAATGCTAAGGTTGTTACCATTGATTCGTATGAAGATGTGCCTG 780
Query 808 AGAACAGCGAGGCGTCTCTAAAGAAAGCTTTGGCTCACCAGCCTATTAGTGTCGCCATTG 867
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 781 AGAACAGCGAGGCGTCTCTAAAGAAAGCTTTGGCTCACCAGCCCGTTAGTGTCGCCATTG 840
Query 868 AAGCGGGTGGTCGCGCTTTCCAGCTCTATTCTTCGGGTGTATTTGATGGACTTTGTGGGA 927
|||| |||||||||||||| |||||||||||||||||||| ||||||||| | |||||||
Sbjct 841 AAGCTGGTGGTCGCGCTTTTCAGCTCTATTCTTCGGGTGTGTTTGATGGAATCTGTGGGA 900
Query 928 CGGAGTTAGACCACGGTGTTGTGGCTGTGGGTTATGGAACCGAGAACGGAAAGGACTACT 987
|||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||
Sbjct 901 CGGAGTTAGACCACGGTGTTGTAGCTGTGGGTTACGGAACTGAGAACGGAAAGGACTACT 960
Query 988 GGATTGTGAGAAACTCATGGGGAAACAGATGGGGAGAGAGCGGATACATAAAGATGGCAC 1047
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 961 GGATTGTGAGAAACTCATGGGGAAACAGATGGGGAGAGAGCGGATACCTAAAGATGGCAC 1020
Query 1048 GTAACATTGAAGCGCCAACAGGAAAGTGTGGAATCGCTATGGAGGCTTCGTATCCGATCA 1107
||||||||| || ||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 1021 GTAACATTGCAGAGCCAACAGGAAAGTGTGGAATAGCGATGGAGGCTTCGTATCCGATCA 1080
Query 1108 AGAAAGGTCAGAACCCACCAAACCCTGGCCCGTCACCACCATCTCCCATTAAGCCACCAA 1167
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1081 AGAAAGGTCAGAACCCACCAAACCCTGGCCCGTCACCGCCATCTCCCATTAAGCCACCAA 1140
Query 1168 CCACATGTGACAAGTACTTCTCTTGCCCTGAGAGCAACACTTGTTGTTGTCTCTACAAGT 1227
|||| |||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1141 CCACGTGTGACAAATATTTCTCTTGCCCTGAGAGCAACACTTGTTGTTGTCTCTACAAGT 1200
Query 1228 ATGGTAAGTACTGCTTCGGATGGGGATGTTGCCCGCTCGAAGCTGCTACTTGCTGCGATG 1287
||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct 1201 ATGGTAAGTACTGCTTCGGTTGGGGATGTTGCCCGCTCGAATCTGCTACTTGCTGCGATG 1260
Query 1288 ATAACTCAAGTTGCTGTCCTCATGAGTACCCGGTTTGTGACGTTAACCGCGGAACCTGTT 1347
|| |||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct 1261 ATCACTCAAGTTGCTGTCCTCATGAGTACCCGGTTTGCGACATTAACCGCGGAACCTGTT 1320
Query 1348 TGATGAGCAAGAACAGTCCGTTTAGCGTGAAGGCTTTAAAGCGTACACCCGCAATACCGT 1407
||||||||||||||||||| || |||||||||||| | ||||||||||||||||||||||
Sbjct 1321 TGATGAGCAAGAACAGTCCATTGAGCGTGAAGGCTCTCAAGCGTACACCCGCAATACCGT 1380
Query 1408 TCTGGGCAAAGAGCAGAAAGCACATTGCGTAAGAAGA-GGAAGACAAAAACATTG 1461
|||||||||||||||||||||||||||||||||| || ||||| ||||||||||
Sbjct 1381 TCTGGGCAAAGAGCAGAAAGCACATTGCGTAAGA-GAAGGAAGG-AAAAACATTG 1433
> Ahg473866 jgi|Araly1|473866|fgenesh2_kg.1__3820__AT1G47128.1
Length=1666
Score = 996 bits (539), Expect = 0.0
Identities = 1125/1400 (80%), Gaps = 71/1400 (5%)
Strand=Plus/Plus
Query 74 GATCCTTCTCCTAGCAATGATCGGCGTTTCAT-ATGCCATGGACATGTCAATCATCTCCT 132
||||||| ||||||| ||| ||| |||| ||| | ||| |||||||||||||||||||||
Sbjct 89 GATCCTTTTCCTAGCGATGGTCGCCGTTGCATCA-GCCGTGGACATGTCAATCATCTCCT 147
Query 133 ACGACGA-AAACCAC--C-ACAT-CACCACCGAGACCAGCCGTAGCGACTCGGAGGTTGA 187
||||||| ||| ||| | | | |||||||| | ||||||||||| | |||| | |
Sbjct 148 ACGACGAGAAA-CACGGCGTC-TCCACCACCG-G--TGGCCGTAGCGACGCAGAGG-TCA 201
Query 188 -GAGAATCTACGAAGCGTGGATGGTGGAACACGGGAAGAAGAAGATGAATCAAAACGGTC 246
||| |||||||| |||||| ||||| ||||||||||| | | |||||| ||| ||
Sbjct 202 TGAGTATCTACGAGGCGTGGTTGGTGAAACACGGGAAG--GGTCA-GAATCAGAACTCTC 258
Query 247 TTGGTGCAGAGAAAGATCAAAGATTCGAGATCTTTAAAGATAATCTTCGTTTCATCGATG 306
|| || |||||||||| | | ||||||||||||||||||||||||||||||||||| |
Sbjct 259 TT-GT--TGAGAAAGATCGACGTTTCGAGATCTTTAAAGATAATCTTCGTTTCATCGACG 315
Query 307 AACATAACACCAAAAACCTCAGTTATAAACTT-GGTTTAACCCGGTTTGCTGAT-TTAAC 364
| ||||||| || || || ||||||| | || ||||| || |||||||| ||| || ||
Sbjct 316 ATCATAACAAGAAGAATCTTAGTTATAGA-TTGGGTTTGACTCGGTTTGCGGATCTT-AC 373
Query 365 CAATGAGGAGTACCGATCTATGTACCTTGGTGCTAA-ACCGACCAAG-AGGGTTTTGA-A 421
|| || ||||| |||| | ||| ||||| ||||| | || ||| | || | || |
Sbjct 374 TAACGATGAGTATAGATCCAAGTATCTTGGAGCTAAGATGGA-GAAGAAAGG-TGAGAGA 431
Query 422 A--ACCAGTGATCGGTATC-AGGCGCGTGTTGGTGACGCGCTTCCTGATTCGGTTGACTG 478
| || || | ||||| | |||| ||||| ||||| | ||| || || || |||||||
Sbjct 432 AGGACTAGCCAACGGTA-CGAGGCTCGTGTCGGTGATGAGCTACCAGAGTCTATTGACTG 490
Query 479 GA-GAAAAGAAGGTGCCGTCGCTGATGTTAAAGATCAAGGAAGCTGTGGGAGTTGTTGGG 537
|| ||| | |||| ||||| ||||| || |||||||| || || || |||||||||||||
Sbjct 491 GAGGAAGA-AAGGAGCCGTGGCTGAGGTCAAAGATCAGGGTAGTTGCGGGAGTTGTTGGG 549
Query 538 CATTCTCAACTATTGGAGCAGTGGAAGGAATAAACAAGATTGTGACAGGAGATTTAATAT 597
|||||||||| | |||||||||||| || || ||| |||| || || ||||| |||||||
Sbjct 550 CATTCTCAACCACTGGAGCAGTGGAGGGGATTAACCAGATCGTAACCGGAGACTTAATAT 609
Query 598 CTTTGTCTGAACAAGAATTGGTTGATTGTGACACATCTTATAACCAAGGATGTAATGGTG 657
| ||||| |||||||| ||||| ||||||||||| || || ||| |||| ||||| || |
Sbjct 610 CCTTGTCCGAACAAGAGTTGGTCGATTGTGACACTTCATACAACGAAGGTTGTAACGGAG 669
Query 658 GTTTAATGGACTATGCGTTTGAGTTTATTATCAAAAATGGTGGTATTGATACCGAAGCGG 717
|| | ||||||||||| |||||||| |||||||| |||||||| || ||||| ||| |
Sbjct 670 GTCTCATGGACTATGCTTTTGAGTTCATTATCAAGAATGGTGGAATCGATACAGAAAAAG 729
Query 718 ATTATCCTTACAAGGCTGCT-GATGG-TCGTTGTGACCAGAACAGGAAAAATGCTAAGGT 775
||||||||||||||| || | ||||| | ||||||||||| ||||||||| ||||| ||
Sbjct 730 ATTATCCTTACAAGGGTG-TCGATGGAAC-TTGTGACCAGATCAGGAAAAACGCTAAAGT 787
Query 776 TGTTACCATTGATTCATATGAAGATG-TCCCTGA-GAACAGCGAGGCGTC-TCTAAAGAA 832
||| || || ||||||||||| |||| |||| | ||||||||| || | | |||||
Sbjct 788 TGTCACAATCGATTCATATGAGGATGTTCCC--ACTTACAGCGAGGAATCGT-TGAAGAA 844
Query 833 AGC-TTTGGCTCACCAGCCTATTAGTGTCGCCATTGAAGCGGGTGGTCGCGCTTTCCAGC 891
||| || ||||| || || |||| ||||||||||| || |||||||| || |||||||
Sbjct 845 AGCAGTT-GCTCATCAACCCGTTAGCGTCGCCATTGAGGCTGGTGGTCGTGCGTTCCAGC 903
Query 892 TCTATTCTTCGGGTGTATTTGATGG-ACTTTGTGGGACGGAGTTAGACCACGGTGTTGTG 950
||||| ||||||| |||||||||| || |||||| || | ||||||| || ||||||
Sbjct 904 TCTATGATTCGGGTATATTTGATGGAAC-TTGTGGAACACAACTAGACCATGGAGTTGTG 962
Query 951 GCTGTGGGTTATGGAACCGAGAACGG-AAAGGACTACTGGATTGTGAGAAACTCATGGGG 1009
|| || || || |||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 963 GCGGTCGGATACGGAACCGAGAACGGCAAA-GACTACTGGATTGTGAGAAACTCATGGGG 1021
Query 1010 -AAACAGATGGGGAGAGAGCGGATACATAAAGATGGCA-CGTAACATTGAAG-CGCCAAC 1066
||| || ||||||||||| |||||| ||||||||| | |||||||| | | | || |
Sbjct 1022 TAAA-AGCTGGGGAGAGAGTGGATACTTAAAGATGG-AGCGTAACATCGC-GTCTTCATC 1078
Query 1067 AGGAAAGTGTGGAATCGCTATGGAGGCTTCGTATCCGATCAAGAAAGGTC-AGAACCCAC 1125
||||| ||||||||||| || || |||| || ||||||||||| || | | ||||| |
Sbjct 1079 CGGAAAATGTGGAATCGCGATTGAACCTTCATACCCGATCAAGAATGG-CGAAAACCCGC 1137
Query 1126 CAAACCCTGGCCCGTCACCACCATCTCCCATTAAGCCACCAACCACA-TGTGACAAGT-A 1183
||||||| || || ||||| ||||||||||| ||||| |||||| || ||||||| || |
Sbjct 1138 CAAACCCGGGACCTTCACCTCCATCTCCCATCAAGCCTCCAACC-CAATGTGACA-GTTA 1195
Query 1184 CTTCTCTTGCCCTGAGAGCAACACTTGTTGTTGTCTCTACAAGTATGGTAAGTACTGCTT 1243
|| | |||| || ||||||||||||||||||||||| | ||||||| ||||| |||||
Sbjct 1196 CTACACTTGTCCAGAGAGCAACACTTGTTGTTGTCTGTTTGAGTATGGAAAGTATTGCTT 1255
Query 1244 CGGATGGGGATGTTGCCCGCTCGAAGCTGCTACTTGCTGCGATGATAACTCA-AGTTGCT 1302
| |||||||||||||| || |||||||| |||||||| ||||| |||| | |||||||
Sbjct 1256 TGCTTGGGGATGTTGCCCACTAGAAGCTGCCACTTGCTGTGATGACAACT-ATAGTTGCT 1314
Query 1303 GTCCTCATGAGTACCCGGTTTGTGACGTTAACC-GCGGAACCTGTTTGAT-GAGCAAGAA 1360
| || || |||||||||||||||||| || | | | ||||||||||| || |||||||||
Sbjct 1315 GCCCGCACGAGTACCCGGTTTGTGACCTTGATCAG-GGAACCTGTTT-ATTGAGCAAGAA 1372
Query 1361 CAGTCCGTTTAGCGTGAAGGCTTTAAAGCGTACACCCGCAATACCGTTCTGGGCA-AAGA 1419
|||||| ||||| || ||||| |||||||||| |||||||| || |||||| || |||
Sbjct 1373 CAGTCCATTTAGTGTTAAGGCCTTAAAGCGTAAACCCGCAACGCCATTCTGGTCACAAG- 1431
Query 1420 GCAGAAAGCACATTGCGTAA 1439
|||||||| ||||||| |||
Sbjct 1432 GCAGAAAGAACATTGCCTAA 1451
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64372514050
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5