BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G43066.1

Length=225
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg948901 jgi|Araly1|948901|scaffold_800788.1                        361    1e-99


> Ahg948901 jgi|Araly1|948901|scaffold_800788.1
Length=268

 Score =  361 bits (195),  Expect = 1e-99
 Identities = 216/226 (96%), Gaps = 2/226 (1%)
 Strand=Plus/Plus

Query  1    ATGGAGAAAAAGAATATGTTCGTGCTGTGTATGATCTTGTTATTGGTGGGCTCGTCGTTG  60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  22   ATGGAGAAAAAGAATATGTTCGTGCTGTGTATGATCTTGTTATTGGTGGGCTCGTCGTTG  81

Query  61   ATGTTTGAGAGAGTTGATTGCAGAGTCGTACGATCGGAGCCTTTCAGAGATATCAACGGC  120
            |||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct  82   ATGTTTGAGAGAGTTGATTGCAGAGTAGTACGATCGGAGCCGTTCAGAGATATCAACGGC  141

Query  121  CATGATCAATCAACGGCGACCAAGGTGAAGAGAAGCTCGTGCAGTCGACGTCCTTTGATG  180
            |||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  142  CATGGTCAATCGACGGCGACCAAGGTGAAGAGAAGCTCGTGCAGTCGACGTCCTTTGATG  201

Query  181  AGGATTCT-AGCGTCTGGACCGAACAAAAGAGGACGTGGTCACTGA  225
            ||||| || |||||| ||||||  || |||||||||||||||||||
Sbjct  202  AGGAT-CTTAGCGTCAGGACCGGGCAGAAGAGGACGTGGTCACTGA  246



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 7714028722


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5