BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G43070.1
Length=677
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494697 jgi|Araly1|494697|fgenesh2_kg.8__513__AT5G43070.1 604 2e-172
Ahg497203 jgi|Araly1|497203|fgenesh2_kg.47__1__AT5G43070.1 603 7e-172
Ahg899894 jgi|Araly1|899894|Al_scaffold_0004_544 320 8e-87
> Ahg494697 jgi|Araly1|494697|fgenesh2_kg.8__513__AT5G43070.1
Length=549
Score = 604 bits (327), Expect = 2e-172
Identities = 438/489 (90%), Gaps = 18/489 (4%)
Strand=Plus/Plus
Query 77 CACCACCTCTTCTCC-ACCGCCGATCTCAGAAACCGAAAACTCCACCACATTACCAACAA 135
||||||| | ||||| | || |||||||||||||||||| ||||||||||||||||||||
Sbjct 66 CACCACCACATCTCCTA-CGGCGATCTCAGAAACCGAAACCTCCACCACATTACCAACAA 124
Query 136 CGGAGACGGAGAAGAATCCCAATCCGGTAACCATTTCCCTCAGAATCTGGCCACCGACTC 195
|||||||||||||||||| ||||| ||||||||||| ||| ||||||||||||||||||
Sbjct 125 TGGAGACGGAGAAGAATCCAAATCCAGTAACCATTTCGCTCCGAATCTGGCCACCGACTC 184
Query 196 AAAAAACTCGCGACGCCGTGATTAACCGTCTGATCGAAACACTGTCAACCGAATCAATCC 255
||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 185 AAAAAACTCGCGACGCCGTCATTAACCGTCTGATCGAAACACTATCAACCGAATCAATCC 244
Query 256 TCTCCAAGAGATTCGGATCTCTTGAATCCGAAGAAGCTTCCTCCGTCGCGAAATCAATCG 315
|||| |||||||||||| |||| || ||||||||||||||||||||||||||||||||||
Sbjct 245 TCTCTAAGAGATTCGGAACTCTCGATTCCGAAGAAGCTTCCTCCGTCGCGAAATCAATCG 304
Query 316 AAGACGAAGCTTACGCCATCGCTTCTGCCACCG-TATTCGGTGATGACGACGGGATCGAG 374
||||||||||||||||| ||||||| ||| ||| | || ||||||||||||||||||||
Sbjct 305 AAGACGAAGCTTACGCCGTCGCTTCCGCCGCCGTTGTT-AGTGATGACGACGGGATCGAG 363
Query 375 ATTCTTAAAGCTTATTCTAAAGAGATTAGTAAACGTATGCTTGAATCTGTTAAGGCTAAG 434
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 364 ATTCTTAAAGCTTATTCTAAAGAGATTAGTAAACGTATGCTTGAATCTGTGAAAGCTAAG 423
Query 435 AGTAATGTGGCTTCTCCTCCACCGAAGGATGGTGATGGAATTG-A-AT-CA-GCTGTTGA 490
| ||||||||||||||||||||| |||||||||||||||| | | || || | | ||
Sbjct 424 ACTAATGTGGCTTCTCCTCCACCAAAGGATGGTGATGGAACTCCAGATTCAAGA-GAAGA 482
Query 491 T-TCGAAG---ATTGATTC-AAGTG-AA-GCTTGACGAGGCTTGAATATGGTGTTGTTCT 543
| | ||| || ||| | || | || |||||||||||||||||||||||||||||||
Sbjct 483 TGTTAAAGGCGAT-GATGCGAA-TCCAAAGCTTGACGAGGCTTGAATATGGTGTTGTTCT 540
Query 544 CTTATCTCT 552
|||||||||
Sbjct 541 CTTATCTCT 549
> Ahg497203 jgi|Araly1|497203|fgenesh2_kg.47__1__AT5G43070.1
Length=497
Score = 603 bits (326), Expect = 7e-172
Identities = 394/427 (92%), Gaps = 4/427 (1%)
Strand=Plus/Plus
Query 50 aatggccgaaaccgaaaCGGAGTCGATCACCACCTCTTCTC-CACCGCCGATCTCAGAAA 108
|||||| |||||||| || ||| ||||||||||| | || | ||||||||||||||||||
Sbjct 29 AATGGCGGAAACCGAGACCGAGACGATCACCACCACATC-CACACCGCCGATCTCAGAAA 87
Query 109 CCGAAAACTCCACCACATTACCAACAACGGAGACGGAGAAGAATCCCAATCCGGTAACCA 168
|||||| |||||||||||||||||||| ||| |||||||||||||| ||||| |||||||
Sbjct 88 CCGAAACCTCCACCACATTACCAACAATGGAAACGGAGAAGAATCCAAATCCAGTAACCA 147
Query 169 TTTCCCTCAGAATCTGGCCACCGACTCAAAAAACTCGCGACGCCGTGATTAACCGTCTGA 228
|||| ||| ||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 148 TTTCGCTCCGAATCTGGCCACCGACTCAAAAAACTCGCGACGCCGTCATTAACCGTCTGA 207
Query 229 TCGAAACACTGTCAACCGAATCAATCCTCTCCAAGAGATTCGGATCTCTTGAATCCGAAG 288
|||||||||| |||||||||||||||||||| |||||||||||| |||| || |||||||
Sbjct 208 TCGAAACACTATCAACCGAATCAATCCTCTCTAAGAGATTCGGAACTCTCGATTCCGAAG 267
Query 289 AAGCTTCCTCCGTCGCGAAATCAATCGAAGACGAAGCTTACGCCATCGCTTCTGCCACCG 348
|||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |||
Sbjct 268 AAGCTTCCTCCGTCGCGAAATCAATCGAAGACGAAGCTTACGCCGTCGCTTCCGCCGCCG 327
Query 349 -TATTCGGTGATGACGACGGGATCGAGATTCTTAAAGCTTATTCTAAAGAGATTAGTAAA 407
| || |||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 328 TTGTT-AGTGAAGACGACGGGATCGAGATTCTTAAAGCTTATTCTAAAGAGATTAGTAAA 386
Query 408 CGTATGCTTGAATCTGTTAAGGCTAAGAGTAATGTGGCTTCTCCTCCACCGAAGGATGGT 467
||||||||||||||||| || ||||||| ||||||||||||||||||||| |||||||||
Sbjct 387 CGTATGCTTGAATCTGTGAAAGCTAAGACTAATGTGGCTTCTCCTCCACCAAAGGATGGT 446
Query 468 GATGGAA 474
|||||||
Sbjct 447 GATGGAA 453
> Ahg899894 jgi|Araly1|899894|Al_scaffold_0004_544
Length=360
Score = 320 bits (173), Expect = 8e-87
Identities = 239/269 (89%), Gaps = 12/269 (4%)
Strand=Plus/Plus
Query 249 TCAATCCTCTCCAAGAGATTCGGAT--CTCTTGAATCCGAAGAAGCTTCCTCCGTCGCGA 306
||||||||||| ||||||||| || |||| ||||||||||||||||||||||||||||
Sbjct 22 TCAATCCTCTCTAAGAGATTC--ATCACTCTCGAATCCGAAGAAGCTTCCTCCGTCGCGA 79
Query 307 AATCAATCGAAGACGAAGCTTACGCCATCGCTTCTGCCACCGT-ATTCGGTGATGACGAC 365
||||||||||||||||||| |||||| ||||||| ||| |||| ||| | ||| ||||||
Sbjct 80 AATCAATCGAAGACGAAGCATACGCCGTCGCTTCCGCCGCCGTGATTAG-TGACGACGAC 138
Query 366 GGGATCGAGATTCTTAAAGCTTATTCTAAAGAGATTAGTAAACGTATGCTTGAATCTGTT 425
| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 139 GAGATCGAGATTCTTAAAACTTATTCTAAAGAGATTAGTAAACGTATGCTTGAATCTGTG 198
Query 426 AAGGCTAAGA-GTAATGTGGCTTCTCCTCCACCGAAGGATGGTGATGGAATTGAATCAGC 484
|| ||||||| | |||||||||||||||||||| || ||||||| | |||||||| |||
Sbjct 199 AAAGCTAAGACG-AATGTGGCTTCTCCTCCACCAAAAGATGGTG--G-AATTGAATTAGC 254
Query 485 TGTTGATTCGAAGATTGATTCAAGTGAAG 513
|| ||||||| | |||||||||||||||
Sbjct 255 TGCAGATTCGAGG-TTGATTCAAGTGAAG 282
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24856141884
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5