BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G43080.1
Length=1068
Score E
Sequences producing significant alignments: (Bits) Value
Ahg948890 jgi|Araly1|948890|scaffold_800777.1 1591 0.0
> Ahg948890 jgi|Araly1|948890|scaffold_800777.1
Length=1124
Score = 1591 bits (861), Expect = 0.0
Identities = 1013/1084 (93%), Gaps = 20/1084 (2%)
Strand=Plus/Plus
Query 1 ATGGCCGACGAAAAAGAGAACTGCGTGAGAATGACAAGAGCAGCAACAAAAAGAAAAGCT 60
|||||||||||||| ||||| ||||| ||||||||||||||||| || ||||||||||||
Sbjct 25 ATGGCCGACGAAAAGGAGAATTGCGTTAGAATGACAAGAGCAGCGACTAAAAGAAAAGCT 84
Query 61 TCCATGGAAGCGGCAATAGACAAAGAACGAATCAACAAGAAGAGAGTCGTACTCGGAGAG 120
|| ||||||||| |||||||| |||||||||||||||| ||||||||||| ||||||||
Sbjct 85 TCAATGGAAGCGACAATAGACGAAGAACGAATCAACAAAAAGAGAGTCGTTCTCGGAGAT 144
Query 121 CTTCCAAACTTGTCCAACATCAAGAAA-TCTCGAAAAGC--C----A--CT-ACAAAACA 170
||||||||||||||||||||||| ||| |||||||||| | | || ||||||||
Sbjct 145 CTTCCAAACTTGTCCAACATCAA-AAAGCCTCGAAAAGCTACAAAGATTCTGACAAAACA 203
Query 171 GAAGAAGAAATCAGTTTCGATTCCGACAATCGAAACCTTAAATTCAGACATTGACACAAG 230
|||| | ||| ||||||||||||||||| ||| ||||||||| ||||||||||| |||||
Sbjct 204 GAAG-A-AAA-CAGTTTCGATTCCGACACTCGTAACCTTAAACTCAGACATTGATACAAG 260
Query 231 ATCTGATGATCCACAAATGTGTGGTCCTTATGTTACATCAATCTTCGAGTATCTTCGTCA 290
|||||||||||| || |||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 261 ATCTGATGATCCTCAGATGTGTGGTCCTTATGTTACTTCAATCTTTGAGTATCTTCGTCA 320
Query 291 ATTAGAGGT------AAAGTCAAGACCTTTGGTTGATTATATAGAGAAGATTCAGAAAGA 344
||||||||| ||| ||||| ||||||||||||||||| |||||||||||||||||
Sbjct 321 ATTAGAGGTGGAAGCAAAATCAAGGCCTTTGGTTGATTATATTGAGAAGATTCAGAAAGA 380
Query 345 TGTAACTTCGAATATGAGAGGAGTTTTGGTTGATTGGTTAGTAGAAGTTGCTGAAGAATA 404
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 381 TATAACTTCGAATATGAGAGGAGTTTTGGTTGATTGGTTAGTAGAAGTTGCTGAAGAATA 440
Query 405 CAAACTTCTCTCAGACACTCTTTACCTCGCTGTTTCTTACATTGATAGATTCTTGTCTCT 464
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 441 CAAACTTCTCTCAGACACTCTTTATCTTGCTGTTTCTTACATTGATAGATTCTTGTCTCT 500
Query 465 CAAGACTGTTAATAAACAAAGGCTTCAGCTTTTGGGAGTTACTTCAATGCTTATTGCTTC 524
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 501 CAAGACTGTTAATAAACAAAAGCTTCAGCTTTTGGGAGTTACTTCAATGCTTATTGCTTC 560
Query 525 AAAGTATGAAGAGATTACTCCTCCAAATGTGGATGACTTTTGTTATATCACAGACAATAC 584
||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||
Sbjct 561 AAAGTATGAAGAGATTACTCCTCCAAATGTGGAAGACTTTTGTTATATTACAGATAATAC 620
Query 585 TTACACGAAACAAGAGATTGTTAAGATGGAAGCTGATATACTTCTTGCGTTGCAATTTGA 644
|||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 621 TTACACGAAACATGAGATTGTTAAGATGGAAGCTGATATACTTCTTGCGTTGCGATTTGA 680
Query 645 ATTAGGAAACCCTACAAGCAACACGTTTCTAAGACGGTTTACAAGGGTTGCACAAGAAGA 704
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 681 ATTAGGAAACCCGACAAGCAACACGTTTCTAAGACGGTTTACAAGGGTTGCACAAGAAGA 740
Query 705 TTTCGAAATGTCACATTTACAGATGGAGTTTCTTTGTAGCTATCTTTCGGAGTTGAGCAT 764
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 741 TTTCGAAATGTCACATTTACAGATGGAGTTTCTTTGTAGCTATCTTTCGGAGTTAAGCAT 800
Query 765 GTTAGACTATCAATCTGTGAAGTTTCTTCCGTCTACTGTGGCTGCTTCAGCGGTGTTTCT 824
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 801 GTTAGACTATCAATCTGTGAAGTTTCTTCCGTCTATTGTGGCTGCTTCAGCGGTGTTTCT 860
Query 825 CGCTAGGTTCATCATCCGTCCAAAACAACATCCCTGGAATGTGATGTTGGAAGAATACAC 884
||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 861 CGCTAGGTTTATCATCCGTCCAAAACAACATCCCTGGAATGTGATGTTAGAAGAATACAC 920
Query 885 AAGATACAAAGCGGGTGATTTGAAAGAATGTGTGGCTATGATACATGACTTGTATCTGAG 944
|| |||||||||||||||||| ||||||||||||| |||||||||||||| |||||||||
Sbjct 921 AAAATACAAAGCGGGTGATTTAAAAGAATGTGTGGGTATGATACATGACTGGTATCTGAG 980
Query 945 TAGAAAATGTGGAGCTTTAGAAGCTATAAGAGAGAAATACAAGCAGCATAAGTTCAAGTG 1004
|||||| | ||||||||| ||||||||||||| || |||||||||||||||||||||||
Sbjct 981 CAGAAAAGGAGGAGCTTTACAAGCTATAAGAGATAAGTACAAGCAGCATAAGTTCAAGTG 1040
Query 1005 TGTAGCGACAATGCCTGTATCACCAGAGCTGCCTCTTACGGTTTTTGAAGATGTCAACAT 1064
||| || |||||||||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct 1041 TGTGGCCACAATGCCTGTATCGCCAGAGCTGCCTCTTACGCTTTTTGAAGATGTCAACAT 1100
Query 1065 TTAG 1068
||||
Sbjct 1101 TTAG 1104
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39762202431
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5