BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G43090.1
Length=1584
Score E
Sequences producing significant alignments: (Bits) Value
Ahg915959 jgi|Araly1|915959|Al_scaffold_0008_710 1016 0.0
> Ahg915959 jgi|Araly1|915959|Al_scaffold_0008_710
Length=1518
Score = 1016 bits (550), Expect = 0.0
Identities = 844/984 (86%), Gaps = 28/984 (3%)
Strand=Plus/Plus
Query 615 GATGGAGAATGGGAGGGGCTCG-TACTTTTCCATTGCTACAGACCG-AGTATGGAGCAAG 672
||||||||| |||| |||||| | || | |||| || | ||| || ||| ||||||||
Sbjct 549 GATGGAGAACAGGAGAGGCTCGCT-CTATGCCATAGCAAAAGA-CGCAGTGTGGAGCAA- 605
Query 673 GAA-TTGGAGAAGACTATCTTTGTGGGTACTAAAGAGACGATTGATATGATTTTCGATGG 731
||| || | ||||||||| | ||||||||||||||||||||||| ||||||||| |
Sbjct 606 GAAGCTGTTGGAGACTATCTATCAGGGTACTAAAGAGACGATTGATACGATTTTCGACCG 665
Query 732 TCTCATTGTCGGTATTTGTGAGTTGATGGTTGATCCTTTTGGTAATGATGTTGTTAAGCT 791
| | |||||| |||||||||||||||||| ||||||| |||||| |||||||||| |||
Sbjct 666 TATTATTGTCCATATTTGTGAGTTGATGGTGGATCCTTATGGTAAGGATGTTGTTATGCT 725
Query 792 GCTTATCGGAAAATGCAGCTCTGAACAGATCATTCTGATTGTTGATGTTGTCACTC-GGC 850
|||||| ||||||||| |||||||||| ||||||| |||||||||| ||||||||| ||
Sbjct 726 GCTTATTGGAAAATGCTGCTCTGAACAAATCATTCAGATTGTTGATCTTGTCACTCAGG- 784
Query 851 ACAT-TTCTAAGTTTGTTAACATATGCTTTAATCCGATCGGAACTTTGGCAATACAAGTT 909
|||| || | |||||||||||||||||||| ||| | |||||| |||||||||||
Sbjct 785 ACATGTT-TCAGTTTGTTAACATATGCTTTGATCTGCGCGGAACCGCGGCAATACAAGAG 843
Query 910 CTGTT-AACTAGTATTCATGAGCGTGCTAACAATCAAATCCCGCGCATTATGGATGC-TA 967
||||| || ||||||||| |||||||||| |||||||||||||||| |||||| | ||
Sbjct 844 CTGTTGGAC-AGTATTCATAAGCGTGCTAATGATCAAATCCCGCGCATCATGGAT-CTTA 901
Query 968 T-AAGCTCGGTAGCACTTCAATTGACAAGGAACACCAATGCCAAATATGTGATTCTAGCA 1026
| || |||||||| |||||||||| ||| || || |||||| | || | ||||||| ||
Sbjct 902 TCAA-CTCGGTAGGACTTCAATTGGCAAAGAGCAGCAATGCTAGATTTCTGATTCTCTCA 960
Query 1027 TGTTTCCGCATGTTTACT-TCGTCGCAGTGTAGGCGTCTTCTTGAAGTTGTCTCTCAACA 1085
|| |||||| ||||| || || ||||| |||||| |||||||||||||||| |||||||
Sbjct 961 TGCTTCCGCCTGTTTCCTCTC-TCGCACTGTAGGTATCTTCTTGAAGTTGTCGCTCAACA 1019
Query 1086 TTGTTACCAGATAGCGATTGATCAAAACGGATGCTGCTTGCT-TCAGCAATGTTTTGACA 1144
||||||| ||||| ||||||||||||| || ||||||||| | |||||||||||| ||||
Sbjct 1020 TTGTTACGAGATATCGATTGATCAAAATGGCTGCTGCTTG-TATCAGCAATGTTTGGACA 1078
Query 1145 AGGAA-CGTGTTCCGAATCATGAGATAAGGCAACGTTTGATTTCGGAAGTTATCGAACAT 1203
| ||| ||||||||||||| |||||||||||||||||||||||||||||| ||| |||
Sbjct 1079 A-GAATCGTGTTCCGAATCCTGAGATAAGGCAACGTTTGATTTCGGAAGTAATCTCTCAT 1137
Query 1204 GCGTTGAAACTCTGCTTGAACTGTC-ATGGAAACTATGTGGTTCAATATGTCGTGGAGCT 1262
||||||| ||||||||||||||| | | ||||||||||||||||| ||| ||||||||||
Sbjct 1138 GCGTTGAGACTCTGCTTGAACTG-CTACGGAAACTATGTGGTTCAGTATATCGTGGAGCT 1196
Query 1263 CGATAATCAACATGAAACAGATTTGCTCGTGAATA-AGCTACTTA-GGAACTATGCGCAT 1320
| |||||||||||| | | | ||||||| | | ||||| || |||||||||| ||
Sbjct 1197 CAATAATCAACATGTGATAAACGCGCTCGTG-AGACAGCTA-ATAGGGAACTATGCACAC 1254
Query 1321 CTAGCCCGCAACAAATATGGAAGTCATGTTGTGCAGAAGTTGTTGAAACTAAGGGGTATC 1380
|| ||||||||||| ||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 1255 CTTGCCCGCAACAAGTATGGAAGTCATGTTGTGCAGAAGTTGTTGAGACTAAGGGGTGTT 1314
Query 1381 GACTCTAAGCTGATTGTTGTTGACTTGCTTAGAGGGATTGATACACTTCTTCTTGACCCG 1440
||| ||| | ||||||| |||||||| ||||| |||||||||||||||||||||||||
Sbjct 1315 GACACTAGGTTGATTGTGGTTGACTTACTTAGTCAGATTGATACACTTCTTCTTGACCCG 1374
Query 1441 TTTGGTAACTATGTCATTCAAACCGCATGGTTTGTGTCTAAGGAAGATGTGCGCCAGATG 1500
||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||| |||
Sbjct 1375 TTTGGAAACTATGTCATTCAAACCGCGTGGTTTGTGTCTAAGGACGATGTGCGCCACATG 1434
Query 1501 TTGAGGTATTATATAGAGCGTAACATTCGATTGATGAGGTGCAACAAATTTGGGAACAAA 1560
||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1435 TTGAGGTATCATATAGAGCTTAACATTCGATTGATGAGGTGCAACAAATTTGGGAACAAA 1494
Query 1561 ATTCTGGAGAAACTCAATATCTAG 1584
||||||||||||||| |||||||
Sbjct 1495 CTTCTGGAGAAACTCAGTATCTAG 1518
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59344601710
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5