BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G43100.1
Length=2377
Score E
Sequences producing significant alignments: (Bits) Value
Ahg915958 jgi|Araly1|915958|Al_scaffold_0008_709 2270 0.0
> Ahg915958 jgi|Araly1|915958|Al_scaffold_0008_709
Length=1998
Score = 2270 bits (1229), Expect = 0.0
Identities = 1414/1500 (94%), Gaps = 26/1500 (2%)
Strand=Plus/Plus
Query 142 ATGGATCGATCTTCCCTCCTCCTTCTCCTCTTTAC-CACCACCACCATCTCTATATTCTT 200
||||||| | ||||| ||||||| |||||| | | |||||||||| |||||||||||||
Sbjct 1 ATGGATCAAGCTTCCTTCCTCCTCCTCCTC-CTCCTCACCACCACCGTCTCTATATTCTT 59
Query 201 CTTCGATCTAACCA---CC-----GC-CGA--T-------GAATCGCCGATGATTTTCCC 242
|||||||||||||| || || ||| | ||||||||||||||||||||
Sbjct 60 CTTCGATCTAACCACCGCCGATGAGCTCGATTTAACAGCCGAATCGCCGATGATTTTCCC 119
Query 243 TCTTAGCTACTCTTCCTTACCACCGCGACCGCGAGTCGAGGATTTTCGCCGCCGTCGCCT 302
|||||||||||| ||||| | | | |||||||||||||||||||||||| ||||| ||
Sbjct 120 TCTTAGCTACTCCTCCTT---A-C-C-ACCGCGAGTCGAGGATTTTCGCCGTCGTCGTCT 173
Query 303 TCATCAATCTCAGCTCCCTAACGCTCACATGAAACTCTACGATGACCTCCTCTCCAACGG 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 174 TCATCAATCTCAGCTCCCTAACGCTCACATGAAACTCTACGATGACCTCCTCTCCAACGG 233
Query 363 CTACTACACTACACGATTATGGATTGGAACACCACCACAAGAGTTTGCTTTGATTGTTGA 422
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 234 CTACTACACTACACGATTATGGATTGGAACACCACCACAAGAATTTGCTTTGATTGTTGA 293
Query 423 TACTGGAAGTACTGTTACTTACGTTCCTTGCTCTACTTGTAAACAGTGTGGGAAGCATCA 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 294 TACTGGAAGTACTGTTACTTACGTTCCTTGCTCTACTTGTAAACAGTGTGGGAAGCATCA 353
Query 483 GGATCCAAAGTTTCAACCAGAGTTATCTACTAGTTACCAAGCTTTGAAGTGTAATCCTGA 542
|||||||||||||||||| | |||||||| ||||||| |||||||||| |||||||||||
Sbjct 354 GGATCCAAAGTTTCAACCTGGGTTATCTAGTAGTTACAAAGCTTTGAAATGTAATCCTGA 413
Query 543 TTGTAATTGTGATGATGAGGGGAAATTATGTGTCTACGAAAGAAGGTATGCGGAGATGAG 602
|||||||||||||||||||||||| |||||||| ||||||||| ||||||| ||||||||
Sbjct 414 TTGTAATTGTGATGATGAGGGGAAGTTATGTGTTTACGAAAGACGGTATGCTGAGATGAG 473
Query 603 TTCGAGTAGCGGGGTTTTGAGTGAGGATTTGATATCTTTTGGTAATGAGAGTCAACTTTC 662
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| |
Sbjct 474 TTCGAGTAGCGGGGTTTTAAGTGAGGATTTGATATCTTTTGGTAATGAGAGTCAGCTTAC 533
Query 663 TCCGCAACGAGCTGTTTTCGGATGTGAGAATGAGGAGACTGGTGATCTTTTTAGCCAACG 722
|||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct 534 TCCGCAACGAGCTGTTTTCGGATGTGAGAATGTGGAAACTGGTGATCTTTTTAGCCAACG 593
Query 723 TGCTGATGGTATAATGGGGTTAGGTCGTGGTAAGCTTAGCGTTGTAGATCAGCTTGTCGA 782
|||||||||||||||||| || ||||||||||||||||| ||||||||||||||||| ||
Sbjct 594 TGCTGATGGTATAATGGGATTGGGTCGTGGTAAGCTTAGTGTTGTAGATCAGCTTGTTGA 653
Query 783 TAAGGGTGTTATCGAGGATGTTTTTTCCTTGTGTTATGGAGGAATGGAAGTTGGTGGTGG 842
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 654 TAAGGGTGTTATCGAGGATGTTTTTTCGTTGTGTTATGGAGGAATGGAAGTTGGTGGTGG 713
Query 843 TGCTATGGTTCTTGGTAAAATATCTCCTCCACCTGGAATGGTGTTTTCTCATTCTGATCC 902
||||||||| ||||| ||||||||||||||| |||||||||||| ||||||||| |||||
Sbjct 714 TGCTATGGTACTTGGGAAAATATCTCCTCCAGCTGGAATGGTGTATTCTCATTCAGATCC 773
Query 903 TTTCCGCAGTCCGTATTACAACATTGACCTGAAACAAATGCATGTTGCTGGAAAGTCTCT 962
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 774 TTTCCGCAGTCCGTATTACAACATTGACCTGAAACAAATGCATGTTGCTGGAAAGTCTCT 833
Query 963 AAAGCTAAACCCAAAGGTCTTCAATGGAAAGCATGGAACCGTCTTGGATAGTGGAACAAC 1022
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 834 AAAGCTAAACCCAAAGGTCTTTAATGGAAAGCATGGAACCGTCTTGGATAGTGGAACAAC 893
Query 1023 ATATGCTTATTTTCCCAAGGAAGCATTTATTGCCATTAAGGATGCGGTCATTAAGGAAAT 1082
|||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||
Sbjct 894 ATATGCTTATTTTCCCAAGGAAGCATTTATTGCCATAAAGGATGCGATCATTAAGGAAAT 953
Query 1083 TCCATCTCTCAAACGGATCCATGGTCCAGACCCAAATTATGATGATGTTTGTTTCTCTGG 1142
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 954 TCCATCTCTCAAACGGATCCATGGCCCAGACCCAAATTATGATGATGTTTGTTTCTCAGG 1013
Query 1143 CGCTGGAAGGGATGTGGCTGAGATACACAAtttttttCCTGAGATTGCTATGGAATTTGG 1202
||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| ||
Sbjct 1014 CGCTGGAAGGGATGTGGCTGAGATACACAATTTTTTTCCTGAGATCGATATGGAATTCGG 1073
Query 1203 AAATGGTCAGAAACTGATTCTTTCTCCCGAGAACTACTTATTCAGGCACACTAAAGTTAG 1262
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1074 TAATGGTCAGAAACTGATTCTTTCTCCCGAGAACTACTTATTCAGGCACACTAAAGTTAG 1133
Query 1263 AGGCGCATACTGCCTTGGAATCTTTCCTGATAGGGATTCAACAACACTCCTAGGAGGAAT 1322
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 1134 AGGCGCATACTGCCTTGGAATCTTTCCTGATAGAGACTCAACAACACTCCTAGGAGGAAT 1193
Query 1323 TGTTGTTCGCAATACTCTTGTCACCTATGATCGTGAGAATGATAAGCTCGGGTTTCTGAA 1382
|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1194 TGTTGTCCGCAATACTCTTGTCACTTATGATCGTGAGAATGATAAGCTCGGGTTTCTGAA 1253
Query 1383 GACCAACTGTTCTGATATATGGAGGAGGCTGGCGGCACCAGAATCTCCTGCACCTACTTC 1442
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1254 GACCAACTGTTCTGATCTATGGAGGAGGCTGGCGGCACCAGAATCTCCTGCACCTACTTC 1313
Query 1443 ACCAATATCCCAAAATAAAAGTTCTAACATTTCTCCAAGCCCTGCTACAAGCGAGTCTCC 1502
|||||| |||||||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct 1314 ACCAATTTCCCAAAATAAAAGTTCTAACATTTCCCCAAGCCCTGCTAAAAGCGAGTCTCC 1373
Query 1503 TACCTCTCATCTTCCAGGTGTTTTCCGGGTTGGAGTTATTACCTTCGAAGTATCAATTAG 1562
|||| || |||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 1374 TACCACTGATCTTCCAGGTGTTTTACGGGTTGGAGTTATTACCTTCGAAGTTTCAATTAG 1433
Query 1563 TGTGAACAATTCTTCATTGAAGCCCAAGTTCTCAGAGATCGCTGATTTCATTGCCCATGA 1622
|| |||||||||| |||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 1434 TGCGAACAATTCTACATTAAAGCCCAAGTTCTCAGAGATTGCTGATTTCATTGCCCATGA 1493
Score = 582 bits (315), Expect = 3e-165
Identities = 351/368 (95%), Gaps = 3/368 (1%)
Strand=Plus/Plus
Query 1671 TGGAAATGAGTATCGCCTGAAATGGGGAGTCTTTCCCCCACAATCTTCCGAGTACATTTC 1730
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1494 TGGAAATGAGTATCGCCTGAAATGGGGAGTCTTTCCCCCACAATCTTCTGAGTACATTTC 1553
Query 1731 CAACACTACGGCATTGAACATAATGTTGCTTCTGAAAGAAAACCGGTTACGCCTACCTGG 1790
||| || |||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 1554 CAATACGACGGCATTGAACATAATGTTGCTTCTGAAAGAAAACCGATTGCGCCTACCTGG 1613
Query 1791 ACAATTTGGAAGCTACAAGTTGCTAGAATGGAAAGCTGAGCAAAAGA-AGAAACAGAGCT 1849
||||||||||||||||||||| ||||||||||| |||||||||||| | ||||||||||
Sbjct 1614 ACAATTTGGAAGCTACAAGTTACTAGAATGGAAGGCTGAGCAAAAGGCA-AAACAGAGCT 1672
Query 1850 GGTGGGAGAAACACTTACTTGGTGTGGTGGGAGGAGCGATGATATCGTTGCTTGTTACTT 1909
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 1673 GGTGGGAGAAACACTTACTCGGGGTGGTGGGAGGAGCGATGATATCGTTGCTTGTTACTT 1732
Query 1910 CGGTGATGATCAAACTTGCATTGGTGTGGAGACGGCGAAAGCAAGAAGAAGCTACTTATG 1969
| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1733 CTGTGATGATCAAACTTGCATTGGTGTGGAGACGGAGAAAGCAAGAAGAAGCTACTTATG 1792
Query 1970 AGCCTGTAAATGCTGCTATTAAAGAACAAGAACTTCAGCCTCTCTCCTCTGAAACATCTA 2029
|||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1793 AGCCTGTAAATGCTACTATTAAAGAACAAGAACTTCAGCCTCTCTCCTCTGACACATCTA 1852
Query 2030 ATGCCTGA 2037
|||| |||
Sbjct 1853 ATGC-TGA 1859
Score = 67.6 bits (36), Expect = 4e-10
Identities = 36/36 (100%), Gaps = 0/36 (0%)
Strand=Plus/Plus
Query 2211 GAAAGAAAGAAAATAGAGAGAAAAATGGTTGGAATG 2246
||||||||||||||||||||||||||||||||||||
Sbjct 1858 GAAAGAAAGAAAATAGAGAGAAAAATGGTTGGAATG 1893
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 89550165995
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5