BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G43140.1 Length=974 Score E Sequences producing significant alignments: (Bits) Value Ahg948885 jgi|Araly1|948885|scaffold_800772.1 1188 0.0 > Ahg948885 jgi|Araly1|948885|scaffold_800772.1 Length=804 Score = 1188 bits (643), Expect = 0.0 Identities = 758/812 (93%), Gaps = 13/812 (2%) Strand=Plus/Plus Query 4 GAAGCATCGGCGAA--AAAAGAAGATGAATATCGTTGGATTGAGCAAACGTTTCTTCTCC 61 |||||||||| ||| |||| || ||||| |||||||||||||||||||||||||||||| Sbjct 1 GAAGCATCGGAGAACCAAAA-AA-ATGAACATCGTTGGATTGAGCAAACGTTTCTTCTCC 58 Query 62 GATCGTCGCTCTCTTCACGGGATCAACAATGCTCTCTTGAAAACAGTGTTCACCGGTCGG 121 |||||||| |||||| |||| ||||||||||||||| ||||||| |||||| |||||||| Sbjct 59 GATCGTCGTTCTCTTAACGGAATCAACAATGCTCTCGTGAAAACTGTGTTCTCCGGTCGG 118 Query 122 AAACCGATTC-TCGGATTCTCCGGCCGATCGATTCACGAGCTACGCAAAACTGGGAATTT 180 ||||||| || |||||||||||||||||||| |||||||||| |||||||||||||| || Sbjct 119 AAACCGA-TCTTCGGATTCTCCGGCCGATCGTTTCACGAGCTGCGCAAAACTGGGAAATT 177 Query 181 CGTAATCCCTCGTGTTTTCTCCGTGTCGCGAAATCTAACGACGAAGGCTTCGTCTTCTTC 240 |||| | |||||||| ||||||||||||||||||||| |||| || |||||| ||||| Sbjct 178 CGTAGTTCCTCGTGTCTTCTCCGTGTCGCGAAATCTATCGACTAATGCTTCG---TCTTC 234 Query 241 TTCGAAACAACCTGCGTTTCTACGATGGTATTTGAGAAAGCTCGAATCACATCCTTTTAT 300 ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| || Sbjct 235 TTCGAAACAACCTGCGTTTCTACGATGGTATTTGAAAAAGCTCGAATCACATCCTTTCAT 294 Query 301 GACTAAGAGTATCACTACTTCTGTCATCTATATGGCTGCAGATCTCACTTCTCAGATGAT 360 |||||||||| |||||||||||||||| |||||||| ||||||||||||||||||||||| Sbjct 295 GACTAAGAGTGTCACTACTTCTGTCATTTATATGGCCGCAGATCTCACTTCTCAGATGAT 354 Query 361 CACAATGGAGCCAACT-GGTTCTTTTGACTTGATAAGAACAGCGAGAATGGCGAGCTTTG 419 ||| ||| |||||| | |||||||||||| |||| |||||||| |||||||| ||||||| Sbjct 355 CACGATGCAGCCAA-TGGGTTCTTTTGACCTGATCAGAACAGCCAGAATGGCTAGCTTTG 413 Query 420 GGTTGATATTTCTCGGGCCGTCTCAGCATCTGTGGTTCAGTTATCTTTCGAAGATATTGC 479 |||||||||||||||||||||| |||||| ||||||||||||||||||| |||||||||| Sbjct 414 GGTTGATATTTCTCGGGCCGTCACAGCATTTGTGGTTCAGTTATCTTTCAAAGATATTGC 473 Query 480 CAAAGCGCGACGTGTTGACAACCTTTAAGAAAATAATGATGGGGCAGGTTCTTTTCGGAC 539 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 474 CAAAGCGCGACGTATTGACAACCTTTAAGAAAATAATGATGGGGCAGGTTCTTTTCGGAC 533 Query 540 CTGTTAGCAACACAGTCTTCTATTCCTACAATGCTGCTTTACAAGGCGAAAATTCT-GAG 598 ||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| || Sbjct 534 CTGTTAGCAACACGGTCTTCTATTCCTACAATGCTGCTTTACAAGGTGAAAATTCTGGA- 592 Query 599 GAAATTGTGGCGAGATTGAAGAGAGATCTTCTGCCAACATTGAAAAATGGACTTATGTAT 658 |||||| |||||||||| ||| |||||||||||||||||||||||||||||||||||||| Sbjct 593 GAAATTTTGGCGAGATTAAAGCGAGATCTTCTGCCAACATTGAAAAATGGACTTATGTAT 652 Query 659 TGGCCGGTCTGTGATTTTGTTACATTCAAGTATGTGCCAGTTCATCTACAGCCACTGATG 718 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 653 TGGCCGGTCTGTGATTTTGTTACATTCAAGTATGTGCCAGTTCATCTACAGCCGCTGATG 712 Query 719 AATAGCTCGTGCGCATATATATGGACAATCTATTTGACATATATGGCAAACCAGACGAAA 778 ||||||||||| |||||||||||||| || |||||||||||||||||||||||||||||| Sbjct 713 AATAGCTCGTGTGCATATATATGGACGATTTATTTGACATATATGGCAAACCAGACGAAA 772 Query 779 GCTGACAGCTGAACAATGACAAGTATGAGTGT 810 |||||||||||||||||||||||||||||||| Sbjct 773 GCTGACAGCTGAACAATGACAAGTATGAGTGT 804 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 36178648233 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5