BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G43140.1
Length=974
Score E
Sequences producing significant alignments: (Bits) Value
Ahg948885 jgi|Araly1|948885|scaffold_800772.1 1188 0.0
> Ahg948885 jgi|Araly1|948885|scaffold_800772.1
Length=804
Score = 1188 bits (643), Expect = 0.0
Identities = 758/812 (93%), Gaps = 13/812 (2%)
Strand=Plus/Plus
Query 4 GAAGCATCGGCGAA--AAAAGAAGATGAATATCGTTGGATTGAGCAAACGTTTCTTCTCC 61
|||||||||| ||| |||| || ||||| ||||||||||||||||||||||||||||||
Sbjct 1 GAAGCATCGGAGAACCAAAA-AA-ATGAACATCGTTGGATTGAGCAAACGTTTCTTCTCC 58
Query 62 GATCGTCGCTCTCTTCACGGGATCAACAATGCTCTCTTGAAAACAGTGTTCACCGGTCGG 121
|||||||| |||||| |||| ||||||||||||||| ||||||| |||||| ||||||||
Sbjct 59 GATCGTCGTTCTCTTAACGGAATCAACAATGCTCTCGTGAAAACTGTGTTCTCCGGTCGG 118
Query 122 AAACCGATTC-TCGGATTCTCCGGCCGATCGATTCACGAGCTACGCAAAACTGGGAATTT 180
||||||| || |||||||||||||||||||| |||||||||| |||||||||||||| ||
Sbjct 119 AAACCGA-TCTTCGGATTCTCCGGCCGATCGTTTCACGAGCTGCGCAAAACTGGGAAATT 177
Query 181 CGTAATCCCTCGTGTTTTCTCCGTGTCGCGAAATCTAACGACGAAGGCTTCGTCTTCTTC 240
|||| | |||||||| ||||||||||||||||||||| |||| || |||||| |||||
Sbjct 178 CGTAGTTCCTCGTGTCTTCTCCGTGTCGCGAAATCTATCGACTAATGCTTCG---TCTTC 234
Query 241 TTCGAAACAACCTGCGTTTCTACGATGGTATTTGAGAAAGCTCGAATCACATCCTTTTAT 300
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct 235 TTCGAAACAACCTGCGTTTCTACGATGGTATTTGAAAAAGCTCGAATCACATCCTTTCAT 294
Query 301 GACTAAGAGTATCACTACTTCTGTCATCTATATGGCTGCAGATCTCACTTCTCAGATGAT 360
|||||||||| |||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 295 GACTAAGAGTGTCACTACTTCTGTCATTTATATGGCCGCAGATCTCACTTCTCAGATGAT 354
Query 361 CACAATGGAGCCAACT-GGTTCTTTTGACTTGATAAGAACAGCGAGAATGGCGAGCTTTG 419
||| ||| |||||| | |||||||||||| |||| |||||||| |||||||| |||||||
Sbjct 355 CACGATGCAGCCAA-TGGGTTCTTTTGACCTGATCAGAACAGCCAGAATGGCTAGCTTTG 413
Query 420 GGTTGATATTTCTCGGGCCGTCTCAGCATCTGTGGTTCAGTTATCTTTCGAAGATATTGC 479
|||||||||||||||||||||| |||||| ||||||||||||||||||| ||||||||||
Sbjct 414 GGTTGATATTTCTCGGGCCGTCACAGCATTTGTGGTTCAGTTATCTTTCAAAGATATTGC 473
Query 480 CAAAGCGCGACGTGTTGACAACCTTTAAGAAAATAATGATGGGGCAGGTTCTTTTCGGAC 539
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 474 CAAAGCGCGACGTATTGACAACCTTTAAGAAAATAATGATGGGGCAGGTTCTTTTCGGAC 533
Query 540 CTGTTAGCAACACAGTCTTCTATTCCTACAATGCTGCTTTACAAGGCGAAAATTCT-GAG 598
||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 534 CTGTTAGCAACACGGTCTTCTATTCCTACAATGCTGCTTTACAAGGTGAAAATTCTGGA- 592
Query 599 GAAATTGTGGCGAGATTGAAGAGAGATCTTCTGCCAACATTGAAAAATGGACTTATGTAT 658
|||||| |||||||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct 593 GAAATTTTGGCGAGATTAAAGCGAGATCTTCTGCCAACATTGAAAAATGGACTTATGTAT 652
Query 659 TGGCCGGTCTGTGATTTTGTTACATTCAAGTATGTGCCAGTTCATCTACAGCCACTGATG 718
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 653 TGGCCGGTCTGTGATTTTGTTACATTCAAGTATGTGCCAGTTCATCTACAGCCGCTGATG 712
Query 719 AATAGCTCGTGCGCATATATATGGACAATCTATTTGACATATATGGCAAACCAGACGAAA 778
||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 713 AATAGCTCGTGTGCATATATATGGACGATTTATTTGACATATATGGCAAACCAGACGAAA 772
Query 779 GCTGACAGCTGAACAATGACAAGTATGAGTGT 810
||||||||||||||||||||||||||||||||
Sbjct 773 GCTGACAGCTGAACAATGACAAGTATGAGTGT 804
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36178648233
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5