BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G43160.1
Length=1132
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494689 jgi|Araly1|494689|fgenesh2_kg.8__505__AT5G43160.1 1026 0.0
Ahg948881 jgi|Araly1|948881|scaffold_800768.1 424 1e-117
> Ahg494689 jgi|Araly1|494689|fgenesh2_kg.8__505__AT5G43160.1
Length=1650
Score = 1026 bits (555), Expect = 0.0
Identities = 667/721 (93%), Gaps = 8/721 (1%)
Strand=Plus/Plus
Query 28 GGAACTAGCATTGCTAGAGGTTTAAGCCCTTCGAGAGA-G-GTTGTTCCTCCAAGAGGGG 85
||||| ||||||| |||||| |||||||||||| | | | |||||||||||||||||||
Sbjct 856 GGAACCAGCATTGTTAGAGGAATAAGCCCTTCGA-A-ATGCGTTGTTCCTCCAAGAGGGG 913
Query 86 TTAGTCCTTCAGATAGAATGAGTCCACTAAGAGTGAGAAGCTC-ACTGAGTAAAAACACG 144
||| ||| |||| ||||||||||||||||||||||||||||| | |||||||||| |||
Sbjct 914 TTACTCCATCAGGCAGAATGAGTCCACTAAGAGTGAGAAGCTCGA-TGAGTAAAAATACG 972
Query 145 CCTTTGATTCCGCATTTTGCTGTGGATGGTAAAGAGAAGATCAGAGATAATGGGGTTGCT 204
|||||||||||| ||||||||||||||| |||||||||||||||||||||||| ||||||
Sbjct 973 CCTTTGATTCCGAATTTTGCTGTGGATGCTAAAGAGAAGATCAGAGATAATGGAGTTGCT 1032
Query 205 GATGCTCACTTGTTAAGGCTATTACACAGTAGGTTGCTGCAATGGCAATTTGCTAATGCA 264
|||||||||||||||| ||||||||||| ||| ||||| |||||||||||||||||||||
Sbjct 1033 GATGCTCACTTGTTAAAGCTATTACACAATAGATTGCTCCAATGGCAATTTGCTAATGCA 1092
Query 265 CGAGCAAATGCTGTTATCTCTTCACAAAAGATGAGAGAGGAGAGAAGACTGTACAATGCA 324
|||||||||| |||||||||| ||||||||||||||| ||||| |||||||| |||||||
Sbjct 1093 CGAGCAAATGTTGTTATCTCTGCACAAAAGATGAGAGCGGAGAAAAGACTGTGCAATGCA 1152
Query 325 TGGAGAAGTATCTCTAATCTGTATAATTCTGTCAGCA-TGAAAAGAATTGAAATGCAGCA 383
|||| |||||||||||| || ||| |||||||||| | ||||||||| ||| |||||||
Sbjct 1153 TGGATAAGTATCTCTAAGCTATATGATTCTGTCAG-AGCGAAAAGAATCGAATTGCAGCA 1211
Query 384 CCTGAAGCAGAATTTGAAACTGATATCTATCCTCAATATGCAGATGGGACATCTAGAAGA 443
|||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct 1212 CCTGAAGCAGAATTTGAAACTGATATCTATTCTCAATAGGCAGATGGGACATCTAGAAGA 1271
Query 444 GTGGTTGGTTATTGATCGGAATTATATGGGTTCTTTGGTAGGAGCTGCTGAAGCTTTGAA 503
|||||||||||| || ||| |||||||||||||||| ||||||||||||||||| | ||
Sbjct 1272 GTGGTTGGTTATGGACCGGGATTATATGGGTTCTTTAGTAGGAGCTGCTGAAGCGCTAAA 1331
Query 504 AGGCAGCACCCTTTGTCTACCTGTTGATTGCGGGGCAATGGTAAATGTACAAAGTGTTAA 563
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1332 AGGCAGCACACTTTGTCTACCTGTTGATTGCGGGGCAATGGTAAATGTACAAAGTGTTAA 1391
Query 564 GGATGCCATTTGTTCAGCAGTTGATGTTATGCAAGCAATGGCATCTTCCATATGCTTGTT 623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1392 GGATGCCATTTGTTCAGCAGTTGATGTTATGCAAGCAATGGCATCTTCCATATGCTTGTT 1451
Query 624 GCTGCCAAAGGTTGGGAAAATAAGTAGCTTGGCAGCAGAACTTGGCCGTGTGAATGCCAA 683
|||||||||||||||||||||||||||||||||| ||||||||||||||||| || |||
Sbjct 1452 GCTGCCAAAGGTTGGGAAAATAAGTAGCTTGGCAACAGAACTTGGCCGTGTGGATATCAA 1511
Query 684 GGACGAAGGGATGCTCGACGTGTGCCGGGACCTTCTAAACACAATCTCAGCTCTGCAGGT 743
||| ||||||||||||||| ||||||| ||||| ||||||||||||||||||||||||||
Sbjct 1512 GGAGGAAGGGATGCTCGACATGTGCCGAGACCTCCTAAACACAATCTCAGCTCTGCAGGT 1571
Query 744 A 744
|
Sbjct 1572 A 1572
> Ahg948881 jgi|Araly1|948881|scaffold_800768.1
Length=616
Score = 424 bits (229), Expect = 1e-117
Identities = 289/317 (91%), Gaps = 7/317 (2%)
Strand=Plus/Minus
Query 815 GTCTTCAACAAAGACTTACTTCAGGCGAGGCTTCTT-AGTCGCCATCGGACTCATCACTT 873
|||||||||||||||||||||||||||||||||||| | | |||||||||||||||||||
Sbjct 611 GTCTTCAACAAAGACTTACTTCAGGCGAGGCTTCTTCA-TAGCCATCGGACTCATCACTT 553
Query 874 CGTCGTCCGGCGAAAATCCCTGCACCGGTATAATATTAAGGTCAAATCCACGGTGGCTAC 933
|||| ||| |||| ||| |||||||||| |||||||||||||||||| ||||||||||
Sbjct 552 CGTCCTCCAGCGAGAATTCCTGCACCGGCGTAATATTAAGGTCAAATCTGCGGTGGCTAC 493
Query 934 TACTGCTGACGTGGCTAGTAGACCCCACACCTTCCGAGTTCGAAACGCCACCATCGTAGT 993
| ||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||
Sbjct 492 TGCTGCTGACGTGGCTAGTAGACCCCACACCTTCCGAATTCGAAACGCCACTGTCGTAGT 433
Query 994 GGCACCGCTTGTGGCCGCCGAGAGCTTGACCGGTGGCGAAAGATTTCCCGCAAACCGAAC 1053
|||||||||| |||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 432 GGCACCGCTTATGGCCGCCCAGAGCTTGACCGGTGGCGAACGATTTCCCGCAAACCGAAC 373
Query 1054 AAACGTGAGATTTCACGGCGGTGGATGGTGTCGATTTATCATTCTCTCCACCACCGTATA 1113
|||||||||||||||||||||||||| ||||| || |||| | |||||||| |||||||
Sbjct 372 AAACGTGAGATTTCACGGCGGTGGATAGTGTC--TT-ATCAATATCTCCACCGCCGTATA 316
Query 1114 AGCTCCGG-TGGCTCGC 1129
||| || | ||||||||
Sbjct 315 AGC-CCTGCTGGCTCGC 300
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42202069119
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5