BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G43170.1
Length=702
Score E
Sequences producing significant alignments: (Bits) Value
Ahg948881 jgi|Araly1|948881|scaffold_800768.1 808 0.0
> Ahg948881 jgi|Araly1|948881|scaffold_800768.1
Length=616
Score = 808 bits (437), Expect = 0.0
Identities = 549/602 (91%), Gaps = 12/602 (2%)
Strand=Plus/Plus
Query 14 CAATGGCGCTTGAAGCTCTTAATTCACCAAGATTGGTCGAGGATCCCTTAAGATTCAATG 73
|||||||||| ||||||||||||||||||||||||||||| ||| ||| |||||| ||||
Sbjct 19 CAATGGCGCTCGAAGCTCTTAATTCACCAAGATTGGTCGATGATTCCTCAAGATTTAATG 78
Query 74 GCGTTGAGCAGTGGACCAAATGTAAGAAACGATCCAAACGTTCGAGATCTGATCTTCATC 133
|||||||||||||||| ||| ||||||||||||||||||| || ||| |||| |||||
Sbjct 79 GCGTTGAGCAGTGGACTAAAGGTAAGAAACGATCCAAACGATCAAGAACTGA---TCATC 135
Query 134 ATAACCACCGTCTCACTGAGGAAGAGTATCTAGCTTTCTGTCTCATGCTTCTTGCTCGGG 193
||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 136 ATAACAACCGTCTCACTGAAGAAGAGTATCTAGCTTTCTGTCTCATGCTTCTTGCTCGGG 195
Query 194 ATGGCGGCGATCTTGACTCTGTGACGGTTG-CGGAGAAGCCGAGTTATAAGTGTGGCGTT 252
| ||| |||||||||| |||||||||| | |||||||||| |||||||||||||||||
Sbjct 196 ACGGCAGCGATCTTGATTCTGTGACGG-CGAAGGAGAAGCCGGGTTATAAGTGTGGCGTT 254
Query 253 TGTTACAAGACGTTTTCGTCTTACCAAGCTCTCGGCGGTCATAAAGCGAGCCACC-GGAG 311
||||||||||||||||||||||||||||||||||| |||||||| |||||||| | || |
Sbjct 255 TGTTACAAGACGTTTTCGTCTTACCAAGCTCTCGGTGGTCATAAGGCGAGCCAGCAGG-G 313
Query 312 CTTATACGGTGGTGGAGAGAATGATAAATCGACACCATCCACCGCCGTGAAATCTCACGT 371
||||||||| |||||||| | |||||| ||||| ||||||||||||||||||||||||
Sbjct 314 CTTATACGGCGGTGGAGATATTGATAA---GACACTATCCACCGCCGTGAAATCTCACGT 370
Query 372 TTGTTCGGTTTGCGGGAAATCTTTCGCCACCGGTCAAGCTCTCGGCGGCCACAAGCGGTG 431
||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||
Sbjct 371 TTGTTCGGTTTGCGGGAAATCGTTCGCCACCGGTCAAGCTCTGGGCGGCCATAAGCGGTG 430
Query 432 CCACTACGATGGTGGCGTTTCGAACTCGGAAGGTGTGGGGTCTACTAGCCACGTCAGCAG 491
||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 431 CCACTACGACAGTGGCGTTTCGAATTCGGAAGGTGTGGGGTCTACTAGCCACGTCAGCAG 490
Query 492 TAGTAGCCACCGTGGATTTGACCTTAATATTATACCGGTGCAGGGATTTTCGCCGGACGA 551
||||||||||| |||||||||||||||||| |||||||||| ||| |||| ||| ||
Sbjct 491 CAGTAGCCACCGCAGATTTGACCTTAATATTACGCCGGTGCAGGAATTCTCGCTGGAGGA 550
Query 552 CGAAGTGATGAGTCCGATGGCGACT-AAGAAGCCTCGCCTGAAGTAAGTCTTTGTTGAAG 610
||||||||||||||||||||| | | ||||||||||||||||||||||||||||||||||
Sbjct 551 CGAAGTGATGAGTCCGATGGCTA-TGAAGAAGCCTCGCCTGAAGTAAGTCTTTGTTGAAG 609
Query 611 AC 612
||
Sbjct 610 AC 611
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25809214809
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5