BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G43175.1
Length=812
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494687 jgi|Araly1|494687|fgenesh2_kg.8__503__AT5G43175.1 996 0.0
Ahg887307 jgi|Araly1|887307|Al_scaffold_0797_1 994 0.0
Ahg472979 jgi|Araly1|472979|fgenesh2_kg.1__2933__AT1G27740.1 100 1e-20
> Ahg494687 jgi|Araly1|494687|fgenesh2_kg.8__503__AT5G43175.1
Length=769
Score = 996 bits (539), Expect = 0.0
Identities = 632/677 (93%), Gaps = 5/677 (1%)
Strand=Plus/Plus
Query 140 AATGGAGAATGAAGCTTTTGTAGATGGTGAATTGGAGTCTCTTTTGGGGATGTTCAACTT 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 94 AATGGAGAATGAAGCTTTTGTAGATGGTGAATTGGAGTCTCTTTTGGGGATGTTCAATTT 153
Query 200 TGATCAATGTTCATCTAACGAATCGAGCTTTTGCAATGCTCCAAATGAGACTGATGTT-T 258
|||||||||||| ||||||||||||||||||||||||||||| |||||| ||||||| |
Sbjct 154 TGATCAATGTTCTTCTAACGAATCGAGCTTTTGCAATGCTCCTAATGAGTTTGATGTTGT 213
Query 259 -TC-TCTTCTGATGATTTCTTCCCATTTGGTACAATTCTGCAAAGTAACTATGCGGCCGT 316
|| |||||||||||||||||||||||| ||| |||||||||| | ||||||||||||||
Sbjct 214 CTCTTCTTCTGATGATTTCTTCCCATTTAGTAAAATTCTGCAAGGGAACTATGCGGCCGT 273
Query 317 TCTTGATGGTTCCAACCACCAAACGAACCGAAATG-TCGACTCAAGACAAGATCTGTTGA 375
|||||| |||||||| ||||||||||| | ||| | |||||||||||||| ||| |||
Sbjct 274 TCTTGACGGTTCCAATCACCAAACGAATCTTTATGAT-GACTCAAGACAAGAGCTGGTGA 332
Query 376 AACCAAGGAAGAAGCAAAAGTTAAGCTCGGAAAGCAATTTGGTTACCGAGCCTAAGACTG 435
|||||||||||||||||||| |||| || |||||||||||||| ||||||||||||||||
Sbjct 333 AACCAAGGAAGAAGCAAAAGATAAGTTCAGAAAGCAATTTGGTCACCGAGCCTAAGACTG 392
Query 436 CTTGGAGAGATGGTCAAAGCCTAAGCAGTTATAATAGTTCAGATGATGAAAAGGCTTTAG 495
|||||||||||||||| |||||||||| ||||||||||||||||||||| || |||||||
Sbjct 393 CTTGGAGAGATGGTCAGAGCCTAAGCAATTATAATAGTTCAGATGATGAGAATGCTTTAG 452
Query 496 GTTTAGTGTCTAATACATCAAAAAGCCTAAAACGCAAAGCGAAAGCCAACAGAGGGATAG 555
|||||||||||||||||||||||||||||||||||||||| ||| |||||| ||||||||
Sbjct 453 GTTTAGTGTCTAATACATCAAAAAGCCTAAAACGCAAAGCAAAATCCAACAAAGGGATAG 512
Query 556 CTTCCGATCCTCAGAGCCTATACGCTAGGAAACGAAGAGAAAGGATAAACGATAGGCTAA 615
||||||||||||| |||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct 513 CTTCCGATCCTCAAAGCCTATATGCTCGGAAACGAAGAGAAAGGATAAACGATAGGCTAA 572
Query 616 AGACATTGCAGAGCCTAGTTCCTAATGGGACAAAGGTCGATATAAGCACAATGCTGGAAG 675
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 573 AGACATTGCAGAGCCTAGTTCCTAATGGGACAAAGGTCGATATAAGCACAATGCTGGAAG 632
Query 676 ATGCTGTCCATTACGTGAAGTTCCTGCAGCTTCAAATCAAGCTCTTGAGTTCAGAAGATC 735
|||| |||||||||||||||||| ||||||| ||||||||||||||||||||||| ||||
Sbjct 633 ATGCCGTCCATTACGTGAAGTTCTTGCAGCTGCAAATCAAGCTCTTGAGTTCAGATGATC 692
Query 736 TATGGATGTATGCACCTCTTGCTCACAATGGTCTGAATATGGGACTACATCACAATCTTT 795
||||||||||||||| ||||||||||||||| || ||||||||||||||||||||| |||
Sbjct 693 TATGGATGTATGCACTTCTTGCTCACAATGGCCTTAATATGGGACTACATCACAATATTT 752
Query 796 TGTCTCGGCTTATTTAA 812
||||||||||||| |||
Sbjct 753 TGTCTCGGCTTATGTAA 769
> Ahg887307 jgi|Araly1|887307|Al_scaffold_0797_1
Length=675
Score = 994 bits (538), Expect = 0.0
Identities = 631/676 (93%), Gaps = 5/676 (1%)
Strand=Plus/Plus
Query 141 ATGGAGAATGAAGCTTTTGTAGATGGTGAATTGGAGTCTCTTTTGGGGATGTTCAACTTT 200
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1 ATGGAGAATGAAGCTTTTGTAGATGGTGAATTGGAGTCTCTTTTGGGGATGTTCAATTTT 60
Query 201 GATCAATGTTCATCTAACGAATCGAGCTTTTGCAATGCTCCAAATGAGACTGATGTT-T- 258
||||||||||| ||||||||||||||||||||||||||||| |||||| ||||||| |
Sbjct 61 GATCAATGTTCTTCTAACGAATCGAGCTTTTGCAATGCTCCTAATGAGTTTGATGTTGTC 120
Query 259 TC-TCTTCTGATGATTTCTTCCCATTTGGTACAATTCTGCAAAGTAACTATGCGGCCGTT 317
|| |||||||||||||||||||||||| ||| |||||||||| | |||||||||||||||
Sbjct 121 TCTTCTTCTGATGATTTCTTCCCATTTAGTAAAATTCTGCAAGGGAACTATGCGGCCGTT 180
Query 318 CTTGATGGTTCCAACCACCAAACGAACCGAAATG-TCGACTCAAGACAAGATCTGTTGAA 376
||||| |||||||| ||||||||||| | ||| | |||||||||||||| ||| ||||
Sbjct 181 CTTGACGGTTCCAATCACCAAACGAATCTTTATGAT-GACTCAAGACAAGAGCTGGTGAA 239
Query 377 ACCAAGGAAGAAGCAAAAGTTAAGCTCGGAAAGCAATTTGGTTACCGAGCCTAAGACTGC 436
||||||||||||||||||| |||| || |||||||||||||| |||||||||||||||||
Sbjct 240 ACCAAGGAAGAAGCAAAAGATAAGTTCAGAAAGCAATTTGGTCACCGAGCCTAAGACTGC 299
Query 437 TTGGAGAGATGGTCAAAGCCTAAGCAGTTATAATAGTTCAGATGATGAAAAGGCTTTAGG 496
||||||||||||||| |||||||||| ||||||||||||||||||||| || ||||||||
Sbjct 300 TTGGAGAGATGGTCAGAGCCTAAGCAATTATAATAGTTCAGATGATGAGAATGCTTTAGG 359
Query 497 TTTAGTGTCTAATACATCAAAAAGCCTAAAACGCAAAGCGAAAGCCAACAGAGGGATAGC 556
||||||||||||||||||||||||||||||||||||||| ||| |||||| |||||||||
Sbjct 360 TTTAGTGTCTAATACATCAAAAAGCCTAAAACGCAAAGCAAAATCCAACAAAGGGATAGC 419
Query 557 TTCCGATCCTCAGAGCCTATACGCTAGGAAACGAAGAGAAAGGATAAACGATAGGCTAAA 616
|||||||||||| |||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 420 TTCCGATCCTCAAAGCCTATATGCTCGGAAACGAAGAGAAAGGATAAACGATAGGCTAAA 479
Query 617 GACATTGCAGAGCCTAGTTCCTAATGGGACAAAGGTCGATATAAGCACAATGCTGGAAGA 676
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 GACATTGCAGAGCCTAGTTCCTAATGGGACAAAGGTCGATATAAGCACAATGCTGGAAGA 539
Query 677 TGCTGTCCATTACGTGAAGTTCCTGCAGCTTCAAATCAAGCTCTTGAGTTCAGAAGATCT 736
||| |||||||||||||||||| ||||||| ||||||||||||||||||||||| |||||
Sbjct 540 TGCCGTCCATTACGTGAAGTTCTTGCAGCTGCAAATCAAGCTCTTGAGTTCAGATGATCT 599
Query 737 ATGGATGTATGCACCTCTTGCTCACAATGGTCTGAATATGGGACTACATCACAATCTTTT 796
|||||||||||||| ||||||||||||||| || ||||||||||||||||||||| ||||
Sbjct 600 ATGGATGTATGCACTTCTTGCTCACAATGGCCTTAATATGGGACTACATCACAATATTTT 659
Query 797 GTCTCGGCTTATTTAA 812
|||||||||||| |||
Sbjct 660 GTCTCGGCTTATGTAA 675
> Ahg472979 jgi|Araly1|472979|fgenesh2_kg.1__2933__AT1G27740.1
Length=1068
Score = 100 bits (54), Expect = 1e-20
Identities = 58/60 (97%), Gaps = 0/60 (0%)
Strand=Plus/Plus
Query 155 TTTTGTAGATGGTGAATTGGAGTCTCTTTTGGGGATGTTCAACTTTGATCAATGTTCATC 214
|||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 18 TTTTGTTGATGGTGAATTGGAGTCTCTCTTGGGGATGTTCAACTTTGATCAATGTTCATC 77
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30002735679
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5