BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G43175.1 Length=812 Score E Sequences producing significant alignments: (Bits) Value Ahg494687 jgi|Araly1|494687|fgenesh2_kg.8__503__AT5G43175.1 996 0.0 Ahg887307 jgi|Araly1|887307|Al_scaffold_0797_1 994 0.0 Ahg472979 jgi|Araly1|472979|fgenesh2_kg.1__2933__AT1G27740.1 100 1e-20 > Ahg494687 jgi|Araly1|494687|fgenesh2_kg.8__503__AT5G43175.1 Length=769 Score = 996 bits (539), Expect = 0.0 Identities = 632/677 (93%), Gaps = 5/677 (1%) Strand=Plus/Plus Query 140 AATGGAGAATGAAGCTTTTGTAGATGGTGAATTGGAGTCTCTTTTGGGGATGTTCAACTT 199 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 94 AATGGAGAATGAAGCTTTTGTAGATGGTGAATTGGAGTCTCTTTTGGGGATGTTCAATTT 153 Query 200 TGATCAATGTTCATCTAACGAATCGAGCTTTTGCAATGCTCCAAATGAGACTGATGTT-T 258 |||||||||||| ||||||||||||||||||||||||||||| |||||| ||||||| | Sbjct 154 TGATCAATGTTCTTCTAACGAATCGAGCTTTTGCAATGCTCCTAATGAGTTTGATGTTGT 213 Query 259 -TC-TCTTCTGATGATTTCTTCCCATTTGGTACAATTCTGCAAAGTAACTATGCGGCCGT 316 || |||||||||||||||||||||||| ||| |||||||||| | |||||||||||||| Sbjct 214 CTCTTCTTCTGATGATTTCTTCCCATTTAGTAAAATTCTGCAAGGGAACTATGCGGCCGT 273 Query 317 TCTTGATGGTTCCAACCACCAAACGAACCGAAATG-TCGACTCAAGACAAGATCTGTTGA 375 |||||| |||||||| ||||||||||| | ||| | |||||||||||||| ||| ||| Sbjct 274 TCTTGACGGTTCCAATCACCAAACGAATCTTTATGAT-GACTCAAGACAAGAGCTGGTGA 332 Query 376 AACCAAGGAAGAAGCAAAAGTTAAGCTCGGAAAGCAATTTGGTTACCGAGCCTAAGACTG 435 |||||||||||||||||||| |||| || |||||||||||||| |||||||||||||||| Sbjct 333 AACCAAGGAAGAAGCAAAAGATAAGTTCAGAAAGCAATTTGGTCACCGAGCCTAAGACTG 392 Query 436 CTTGGAGAGATGGTCAAAGCCTAAGCAGTTATAATAGTTCAGATGATGAAAAGGCTTTAG 495 |||||||||||||||| |||||||||| ||||||||||||||||||||| || ||||||| Sbjct 393 CTTGGAGAGATGGTCAGAGCCTAAGCAATTATAATAGTTCAGATGATGAGAATGCTTTAG 452 Query 496 GTTTAGTGTCTAATACATCAAAAAGCCTAAAACGCAAAGCGAAAGCCAACAGAGGGATAG 555 |||||||||||||||||||||||||||||||||||||||| ||| |||||| |||||||| Sbjct 453 GTTTAGTGTCTAATACATCAAAAAGCCTAAAACGCAAAGCAAAATCCAACAAAGGGATAG 512 Query 556 CTTCCGATCCTCAGAGCCTATACGCTAGGAAACGAAGAGAAAGGATAAACGATAGGCTAA 615 ||||||||||||| |||||||| ||| ||||||||||||||||||||||||||||||||| Sbjct 513 CTTCCGATCCTCAAAGCCTATATGCTCGGAAACGAAGAGAAAGGATAAACGATAGGCTAA 572 Query 616 AGACATTGCAGAGCCTAGTTCCTAATGGGACAAAGGTCGATATAAGCACAATGCTGGAAG 675 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 573 AGACATTGCAGAGCCTAGTTCCTAATGGGACAAAGGTCGATATAAGCACAATGCTGGAAG 632 Query 676 ATGCTGTCCATTACGTGAAGTTCCTGCAGCTTCAAATCAAGCTCTTGAGTTCAGAAGATC 735 |||| |||||||||||||||||| ||||||| ||||||||||||||||||||||| |||| Sbjct 633 ATGCCGTCCATTACGTGAAGTTCTTGCAGCTGCAAATCAAGCTCTTGAGTTCAGATGATC 692 Query 736 TATGGATGTATGCACCTCTTGCTCACAATGGTCTGAATATGGGACTACATCACAATCTTT 795 ||||||||||||||| ||||||||||||||| || ||||||||||||||||||||| ||| Sbjct 693 TATGGATGTATGCACTTCTTGCTCACAATGGCCTTAATATGGGACTACATCACAATATTT 752 Query 796 TGTCTCGGCTTATTTAA 812 ||||||||||||| ||| Sbjct 753 TGTCTCGGCTTATGTAA 769 > Ahg887307 jgi|Araly1|887307|Al_scaffold_0797_1 Length=675 Score = 994 bits (538), Expect = 0.0 Identities = 631/676 (93%), Gaps = 5/676 (1%) Strand=Plus/Plus Query 141 ATGGAGAATGAAGCTTTTGTAGATGGTGAATTGGAGTCTCTTTTGGGGATGTTCAACTTT 200 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1 ATGGAGAATGAAGCTTTTGTAGATGGTGAATTGGAGTCTCTTTTGGGGATGTTCAATTTT 60 Query 201 GATCAATGTTCATCTAACGAATCGAGCTTTTGCAATGCTCCAAATGAGACTGATGTT-T- 258 ||||||||||| ||||||||||||||||||||||||||||| |||||| ||||||| | Sbjct 61 GATCAATGTTCTTCTAACGAATCGAGCTTTTGCAATGCTCCTAATGAGTTTGATGTTGTC 120 Query 259 TC-TCTTCTGATGATTTCTTCCCATTTGGTACAATTCTGCAAAGTAACTATGCGGCCGTT 317 || |||||||||||||||||||||||| ||| |||||||||| | ||||||||||||||| Sbjct 121 TCTTCTTCTGATGATTTCTTCCCATTTAGTAAAATTCTGCAAGGGAACTATGCGGCCGTT 180 Query 318 CTTGATGGTTCCAACCACCAAACGAACCGAAATG-TCGACTCAAGACAAGATCTGTTGAA 376 ||||| |||||||| ||||||||||| | ||| | |||||||||||||| ||| |||| Sbjct 181 CTTGACGGTTCCAATCACCAAACGAATCTTTATGAT-GACTCAAGACAAGAGCTGGTGAA 239 Query 377 ACCAAGGAAGAAGCAAAAGTTAAGCTCGGAAAGCAATTTGGTTACCGAGCCTAAGACTGC 436 ||||||||||||||||||| |||| || |||||||||||||| ||||||||||||||||| Sbjct 240 ACCAAGGAAGAAGCAAAAGATAAGTTCAGAAAGCAATTTGGTCACCGAGCCTAAGACTGC 299 Query 437 TTGGAGAGATGGTCAAAGCCTAAGCAGTTATAATAGTTCAGATGATGAAAAGGCTTTAGG 496 ||||||||||||||| |||||||||| ||||||||||||||||||||| || |||||||| Sbjct 300 TTGGAGAGATGGTCAGAGCCTAAGCAATTATAATAGTTCAGATGATGAGAATGCTTTAGG 359 Query 497 TTTAGTGTCTAATACATCAAAAAGCCTAAAACGCAAAGCGAAAGCCAACAGAGGGATAGC 556 ||||||||||||||||||||||||||||||||||||||| ||| |||||| ||||||||| Sbjct 360 TTTAGTGTCTAATACATCAAAAAGCCTAAAACGCAAAGCAAAATCCAACAAAGGGATAGC 419 Query 557 TTCCGATCCTCAGAGCCTATACGCTAGGAAACGAAGAGAAAGGATAAACGATAGGCTAAA 616 |||||||||||| |||||||| ||| |||||||||||||||||||||||||||||||||| Sbjct 420 TTCCGATCCTCAAAGCCTATATGCTCGGAAACGAAGAGAAAGGATAAACGATAGGCTAAA 479 Query 617 GACATTGCAGAGCCTAGTTCCTAATGGGACAAAGGTCGATATAAGCACAATGCTGGAAGA 676 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 480 GACATTGCAGAGCCTAGTTCCTAATGGGACAAAGGTCGATATAAGCACAATGCTGGAAGA 539 Query 677 TGCTGTCCATTACGTGAAGTTCCTGCAGCTTCAAATCAAGCTCTTGAGTTCAGAAGATCT 736 ||| |||||||||||||||||| ||||||| ||||||||||||||||||||||| ||||| Sbjct 540 TGCCGTCCATTACGTGAAGTTCTTGCAGCTGCAAATCAAGCTCTTGAGTTCAGATGATCT 599 Query 737 ATGGATGTATGCACCTCTTGCTCACAATGGTCTGAATATGGGACTACATCACAATCTTTT 796 |||||||||||||| ||||||||||||||| || ||||||||||||||||||||| |||| Sbjct 600 ATGGATGTATGCACTTCTTGCTCACAATGGCCTTAATATGGGACTACATCACAATATTTT 659 Query 797 GTCTCGGCTTATTTAA 812 |||||||||||| ||| Sbjct 660 GTCTCGGCTTATGTAA 675 > Ahg472979 jgi|Araly1|472979|fgenesh2_kg.1__2933__AT1G27740.1 Length=1068 Score = 100 bits (54), Expect = 1e-20 Identities = 58/60 (97%), Gaps = 0/60 (0%) Strand=Plus/Plus Query 155 TTTTGTAGATGGTGAATTGGAGTCTCTTTTGGGGATGTTCAACTTTGATCAATGTTCATC 214 |||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 18 TTTTGTTGATGGTGAATTGGAGTCTCTCTTGGGGATGTTCAACTTTGATCAATGTTCATC 77 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 30002735679 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5