BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G43180.1
Length=871
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494686 jgi|Araly1|494686|fgenesh2_kg.8__502__AT5G43180.1 1251 0.0
> Ahg494686 jgi|Araly1|494686|fgenesh2_kg.8__502__AT5G43180.1
Length=811
Score = 1251 bits (677), Expect = 0.0
Identities = 760/801 (95%), Gaps = 2/801 (0%)
Strand=Plus/Plus
Query 45 agagaggagaAAATGAGAATGAAGATCGACACAGACAGCATTGTAGTGCCATTGAGTTTG 104
|||||||||||||||||||||||| | ||||||||||| |||||||||||||||||||||
Sbjct 12 AGAGAGGAGAAAATGAGAATGAAGGTGGACACAGACAGTATTGTAGTGCCATTGAGTTTG 71
Query 105 TTGATAGCTGTGGGATACCATGTCTTTCTATGGAACACCTTCAAGCACAATCCTTCTCGT 164
|||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 72 TTGATAGCAGTGGGATACCATGTCTTTCTATGGAACACCTTCAAGCACAACCCTTCTCGT 131
Query 165 ACTTCACTTGGCATTGATTCCTCAAAACGCAAATCTTGGTTCCGTGACATCAAAGAGGGT 224
||||| ||||||||||||||||| ||||||||| |||||||||| |||||||||||||||
Sbjct 132 ACTTCCCTTGGCATTGATTCCTCCAAACGCAAAGCTTGGTTCCGCGACATCAAAGAGGGT 191
Query 225 GACGATAAGACTGGGATGTTGGCCGTACAAAGCTTGAGGAACaaaaaaaTGGTGACAATT 284
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 192 GACGATAAGACTGGGATGTTAGCAGTACAAAGCTTGAGGAACAAAAAAATGGTGACAATT 251
Query 285 CTAACCGCTACAATCGCCATCCTTATCTTCCTTTCTCTAGCTGCGGTAACTAACAACGCA 344
|| ||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 252 CTCACCGCTACAATAGCCATCCTTATCTTCCTTTCACTAGCTGCGGTAACTAACAACGCG 311
Query 345 TTTAAAGCCAGTCATCTCATCACTGCCGCTGATGACATCTTCTTTGGCTCACAAAATGCT 404
|||||||| |||||||| ||||| || |||||||||||||| |||||||||||||| |||
Sbjct 312 TTTAAAGCGAGTCATCTTATCACCGCAGCTGATGACATCTTATTTGGCTCACAAAACGCT 371
Query 405 AAAATCTTTGTCCTAAAATATGCCTCAGCCTCGTTACTTCTTGCAGCAAGCTTCTTCTTT 464
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 372 AAAATCTTTGTCCTAAAATATGCCTCTGCCTCGTTGCTTCTTGCAGCAAGCTTCTTCTTT 431
Query 465 AGCTCAATTGCCTTGAGTTATTTAATGGATGCAATTTTCCTTATCAACGCAATAG-CTAA 523
|||||||||||||| |||||||| |||||||||||||||||||||||||| || | ||||
Sbjct 432 AGCTCAATTGCCTTAAGTTATTTGATGGATGCAATTTTCCTTATCAACGCGAT-GTCTAA 490
Query 524 AAAGCATGAAGGAGACTGTGACTGCGCTTATGATATCACGGGGACAAGTTCGTTTAGGGA 583
||||| ||||||||||||||||||| ||| |||||||||||||||| ||||||||||||
Sbjct 491 GAAGCAGGAAGGAGACTGTGACTGCGGTTACGATATCACGGGGACAACTTCGTTTAGGGA 550
Query 584 GTATACAAGATTGGTGTTGGAGAGAGGGTTTTTTATGGCTATGGTTGGGAACAGAGTTAT 643
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 551 GTATACAAGATTGGTATTGGAGAGAGGGTTTTTTATGGCTATGGTTGGGAACAGAGTTAT 610
Query 644 GTGTGTTTCTATACCGTTGTTGCTTTGGATGTTTGGACCGTTACCGGTGCTCGCATCTTC 703
||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 611 GTGTGTTTCAATACCGTTGTTGCTTTGGATGTTTGGACCGTTACCGGTGCTAGCATCTTC 670
Query 704 ATTAGGCCTTGTTTGGGTGTTGTATCAGTTTGATTTTCCGTCAACCGCTAAAATTTCTGT 763
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 671 ATTAGGCCTTGTTTGGGTGTTGTATCAGTTTGATTTTCCGTCAACCGCTAAAATTTCTGT 730
Query 764 TTGTAAAACATAGAGAGAGAGATATTGAAAATAACAGGTTGATTATTGTTTTCATTCATT 823
||||||||||||||||||| |||||||||||||||| |||||||||||||||| |||||
Sbjct 731 ATGTAAAACATAGAGAGAGATATATTGAAAATAACAGTTTGATTATTGTTTTCAATCATT 790
Query 824 ATATATAATAACGAATGGAAA 844
||||||||||| |||||||||
Sbjct 791 ATATATAATAATGAATGGAAA 811
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32251987782
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5