BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G43185.1
Length=400
Score E
Sequences producing significant alignments: (Bits) Value
Ahg948875 jgi|Araly1|948875|scaffold_800762.1 444 3e-124
> Ahg948875 jgi|Araly1|948875|scaffold_800762.1
Length=292
Score = 444 bits (240), Expect = 3e-124
Identities = 273/288 (95%), Gaps = 6/288 (2%)
Strand=Plus/Plus
Query 42 AAGGAAACTCAGGAGATGAGAAGAAAATTTTGGTGGTTGTTTAT-AAACTAT-AATATAA 99
||||||||||||||||||||||||||| |||||||||||||||| ||| || |||||||
Sbjct 6 AAGGAAACTCAGGAGATGAGAAGAAAAATTTGGTGGTTGTTTATGAAA--ATCAATATAA 63
Query 100 TACACATCAAATCTTTGACACGATACCAACTTGAAGAAGAAGAAGAAGCTGCATTGATCT 159
||||||||||||||||||||||| |||||||| ||||||| |||||||||||||||||||
Sbjct 64 TACACATCAAATCTTTGACACGACACCAACTTAAAGAAGATGAAGAAGCTGCATTGATCT 123
Query 160 TCCCAAAAGATCCTCCATGGTTCAAGGCATGGATGGTTCCTGTGATGATGCTTTTCGTTT 219
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 124 TCCCAAAAGATCCTCCATGGTTCAAGGCATGGATGGTTCCTGTGATGATGCTTTTCGTTT 183
Query 220 TCTTTGTATTTTCTATTGTAGGAATTTGTCGACGTTGTCGCAATTGTCGCCGTGGTGAAA 279
||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 184 TCTTTGTCTTTTCTATTGTAGGAATTTGTCGACGTTGTCGAAATTGTCGCCGTGGTGAAA 243
Query 280 ATTCTCCCAGCATTCATCCTATTAACTAATTATTTA-ATTTAGAtttt 326
|||||||||||||||||||||| | ||||||||||| |||| | ||||
Sbjct 244 ATTCTCCCAGCATTCATCCTATCACCTAATTATTTAGATTTTG-TTTT 290
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 14346501464
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5