BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G43185.1 Length=400 Score E Sequences producing significant alignments: (Bits) Value Ahg948875 jgi|Araly1|948875|scaffold_800762.1 444 3e-124 > Ahg948875 jgi|Araly1|948875|scaffold_800762.1 Length=292 Score = 444 bits (240), Expect = 3e-124 Identities = 273/288 (95%), Gaps = 6/288 (2%) Strand=Plus/Plus Query 42 AAGGAAACTCAGGAGATGAGAAGAAAATTTTGGTGGTTGTTTAT-AAACTAT-AATATAA 99 ||||||||||||||||||||||||||| |||||||||||||||| ||| || ||||||| Sbjct 6 AAGGAAACTCAGGAGATGAGAAGAAAAATTTGGTGGTTGTTTATGAAA--ATCAATATAA 63 Query 100 TACACATCAAATCTTTGACACGATACCAACTTGAAGAAGAAGAAGAAGCTGCATTGATCT 159 ||||||||||||||||||||||| |||||||| ||||||| ||||||||||||||||||| Sbjct 64 TACACATCAAATCTTTGACACGACACCAACTTAAAGAAGATGAAGAAGCTGCATTGATCT 123 Query 160 TCCCAAAAGATCCTCCATGGTTCAAGGCATGGATGGTTCCTGTGATGATGCTTTTCGTTT 219 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 124 TCCCAAAAGATCCTCCATGGTTCAAGGCATGGATGGTTCCTGTGATGATGCTTTTCGTTT 183 Query 220 TCTTTGTATTTTCTATTGTAGGAATTTGTCGACGTTGTCGCAATTGTCGCCGTGGTGAAA 279 ||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 184 TCTTTGTCTTTTCTATTGTAGGAATTTGTCGACGTTGTCGAAATTGTCGCCGTGGTGAAA 243 Query 280 ATTCTCCCAGCATTCATCCTATTAACTAATTATTTA-ATTTAGAtttt 326 |||||||||||||||||||||| | ||||||||||| |||| | |||| Sbjct 244 ATTCTCCCAGCATTCATCCTATCACCTAATTATTTAGATTTTG-TTTT 290 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 14346501464 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5