BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G43190.1
Length=1432
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494684 jgi|Araly1|494684|fgenesh2_kg.8__500__AT5G43190.1 1929 0.0
> Ahg494684 jgi|Araly1|494684|fgenesh2_kg.8__500__AT5G43190.1
Length=1324
Score = 1929 bits (1044), Expect = 0.0
Identities = 1163/1221 (95%), Gaps = 6/1221 (0%)
Strand=Plus/Plus
Query 55 CACCATGTTCCGTCTCAGAGCTCACGG-AAAGAAACCCATAACCATcaccaccaccacca 113
|||||||||||| |||||| ||||||| ||| |||||||| ||||||||||| |||||||
Sbjct 1 CACCATGTTCCGCCTCAGAACTCACGGCAAA-AAACCCATTACCATCACCACAACCACCA 59
Query 114 ccaccaccGCCTCCACTTTCCTCTACTGGTCACCAGAATCTTCCCCCACCGCTCTATCTT 173
|||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |
Sbjct 60 CCACCACCGCCTCCACTTTCCTCTACTGGTCACCCGAATCTTCCCCCACCACTCTATCAT 119
Query 174 CTCCGACCAACTTGGATCCAAACATCTGGTCTAACTTACCAAACCACCTCCTCGAACACA 233
||||||||||| |||||||| ||||||||||||||||||||| ||||||||||||||||
Sbjct 120 CTCCGACCAACATGGATCCATCCATCTGGTCTAACTTACCAAATCACCTCCTCGAACACA 179
Query 234 TCCTCTCTTTACTTCCTTTCAAAActctcctcactctccgatcaatctcacgtcatctcc 293
|||||||| | || || ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 180 TCCTCTCTCTCCTCCCATTCAAAACTCTCCTCACTCTCCGGTCAATCTCACGTCATCTCC 239
Query 294 gatctctaatcctctctccatctttcatctccgaccactctttctctcttccttcgttt- 352
|||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |||
Sbjct 240 GATCTCTAATCCTCTCTCCATCTTTCATTTCCGACCATTCTTTCTCTCTTCCTTC-TTTC 298
Query 353 cttctcctctctcatcctcaatcttttaactccttccctctctttaaccctaatctcatc 412
|| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 299 CTCCTCCTCTCTCATCCTCAATCTTTCAACTCCTTCCCTCTCTTTAACCCTAATCTCATC 358
Query 413 tcctGGTGCACGTTACCTCTCCCTCGCTCCCTATCACTAACCTGCGcctcttctcttctc 472
|||||||||||||||||||||||||| ||||| |||||||| |||||||| ||||| |||
Sbjct 359 TCCTGGTGCACGTTACCTCTCCCTCGTTCCCTCTCACTAACTTGCGCCTCCTCTCTCCTC 418
Query 473 tcttcctccaacggcctcctctgtttctccctctcaccttcctctgtttcttctctttcA 532
||||| |||||||||||||||||||||||| |||| |||||||||||||||||||| |||
Sbjct 419 TCTTCTTCCAACGGCCTCCTCTGTTTCTCCATCTCTCCTTCCTCTGTTTCTTCTCTCTCA 478
Query 533 ATCTTCAATCCCTTAACAAGATCTTCAAGATCTATCAAATTACCTTGTTACCCTTTTCCC 592
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 479 ATCTTCAATCCCTTAACAAGATCCTCAAGATCTATCAAATTACCGTGTTACCCTTTTCCC 538
Query 593 TTTGAGCTTCTCTCTCTTGTGACATCCCCCAAAGGCTACAAAATCTTCACTCTTTGTTCA 652
|||||||||||||||||||| |||||||| | || ||||||||||||||||||||||||
Sbjct 539 TTTGAGCTTCTCTCTCTTGTTACATCCCCTGACGGTTACAAAATCTTCACTCTTTGTTCA 598
Query 653 TCGTCCTCCGCCGCTTCTTCAAGATCCGTTTGTCTCTACGATTCCGGTGACCGCTCATGG 712
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 599 TCTTCCTCCGCCGCTTCTTCAAGATCCGTTTGTCTCTACGATTCCGGTGACCGCTCTTGG 658
Query 713 AGAAAATTCGGCGGCGTTGATCAAGTTTTACCTCGTGGGTTTAACCAAGATGGAGTCTTT 772
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 659 AGAAAATTCGGCGGCGTTGATCAAGTTTTACCTCGTGGGTTTAATCAAGATGGAGTCTTT 718
Query 773 TACAATGGGTCACTCTATTTCGCTAGATCCGAGCCTTTTCTAATCGTGAGCGTTGATCTC 832
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 TACAATGGGTCTCTCTATTTCGCTAGATCCGAGCCTTTTCTAATCGTGAGCGTTGATCTC 778
Query 833 AACGACGGAAAGTGGACAACAGCCACCGGAGACGGTGTTTTTCCGGCGGATGATGAGATC 892
||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 779 AACGACGGAAAATGGACAACAGCCACCGGAGACGGTGTTTTTCCGGCGGATAATGAGATC 838
Query 893 ACGTTTGCTAGATTAGTAAGTGATCCAG-AGAAGAAGATACTTTACATGGTTGGAGGAAT 951
|||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 839 ACGTTTGCTAGATTAGTAAGTGATCCAGTA-AAGAAGATACTTTACATGGTTGGAGGAAT 897
Query 952 TGGGAGCAATGGGATTTGTAGGAGTATCAAGATTTGGGAATTTAAAGAAGAAACAGAGAG 1011
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 898 TGGAAGCAATGGGATTTGTAGGAGTATCAAGATTTGGGAATTTAAAGAAGAAACAGAGAG 957
Query 1012 TTGGATCGAAGTAGAAACATTACCGGACATTGTTTGTAGGAAGTTTACTTCGGTTTGTTA 1071
|||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||
Sbjct 958 TTGGATCGAAGTAGAAACATTACCGGACATTGTTTGTAAGAAGTTTACTTCGGTGTGTTA 1017
Query 1072 CCATAACTACGAGCATGTGTACTGTCTGTGGCATAAGGAGATGATTTGTGTGTGTTGTTA 1131
||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 1018 CCATAACTACGAGCATGTGTATTGTTTGTGGCATAAGGAGATGATTTGTGTGTGTTGTTA 1077
Query 1132 CAATTGGCCTGAGATTCTGTTTTTTCATGTTGGAAGAAGGACATGGCATTGGGTTCCTAA 1191
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 1078 CAATTGGCCTGAGATTCTCTTTTTTCATGTTGGGAGAAGGACATGGCATTGGGTTCCTAA 1137
Query 1192 ATGTCCTTCGTTGCCGGAGAAATGGAGTTGTGGGTTTCGGTGGTTCTCTTTTGTCCCAAG 1251
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1138 GTGTCCTTCGTTGCCGGAGAAATGGAGTTGTGGGTTTCGTTGGTTCTCTTTTGTCCCAAG 1197
Query 1252 CTTGTCTGCTTCTGTTTAGTT 1272
||||| |||||||||||||||
Sbjct 1198 CTTGTGTGCTTCTGTTTAGTT 1218
Score = 150 bits (81), Expect = 2e-35
Identities = 98/106 (92%), Gaps = 1/106 (1%)
Strand=Plus/Plus
Query 1317 AGTATTTGTTATTGTTTGCGTTCAAATCTTCA-TTTTTTGGGGTCTTCTATCAATTGTTT 1375
|||||||||||||||||| |||||||||| || |||||| | ||||||||||||| ||||
Sbjct 1219 AGTATTTGTTATTGTTTGTGTTCAAATCTCCATTTTTTTTGTGTCTTCTATCAATGGTTT 1278
Query 1376 CTTTGGTATCTCTTTGTGAAATAAAAGATTGGTAATATTGGGTATT 1421
| ||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1279 CGTTGGTATCTCTTTGTGAAATAAAAGATTGGTAATATTGGTTATT 1324
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53554884470
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5