BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G43200.1
Length=624
Score E
Sequences producing significant alignments: (Bits) Value
Ahg948871 jgi|Araly1|948871|scaffold_800758.1 726 0.0
Ahg932498 jgi|Araly1|932498|scaffold_400486.1 667 0.0
Ahg932851 jgi|Araly1|932851|scaffold_400839.1 172 2e-42
Ahg899859 jgi|Araly1|899859|Al_scaffold_0004_509 158 6e-38
> Ahg948871 jgi|Araly1|948871|scaffold_800758.1
Length=652
Score = 726 bits (393), Expect = 0.0
Identities = 555/630 (88%), Gaps = 24/630 (4%)
Strand=Plus/Plus
Query 1 ATGGAAACTGAATCTTTCAAACTCGATGTTCATGTAAAAGCTTTGTCTCAACCTCCGTCG 60
|||||||||||| | |||||||||||||||||||||| ||||| |||||| ||| ||||
Sbjct 21 ATGGAAACTGAAGCAATCAAACTCGATGTTCATGTAAAGGCTTTCTCTCAAGCTCGGTCG 80
Query 61 TTAGGGTTCTTAAGTACGGTAGTAATCAGTC-AATACAGAGAAGTAGAGGAATTTCTCAT 119
||||||||||| ||||||||||||||||||| | | ||||||||| ||||||||| ||||
Sbjct 81 TTAGGGTTCTTCAGTACGGTAGTAATCAGTCTAGT-CAGAGAAGTCGAGGAATTTATCAT 139
Query 120 TAACAACAAGGATAATTGTGTCACGAGTCTCGGATCTTACCCGGATGATTCTTCTACTTG 179
|||| |||||||| || |||||||||||||| |||||||||| | ||||||| | | |
Sbjct 140 TAACGACAAGGATGATAGTGTCACGAGTCTCAGATCTTACCC-G--GATTCTTAT-C-T- 193
Query 180 TCACGACCCACTAATCTCTCTGACACTCCCAAGTTTCAAACCAAACGACGTCTATCAACA 239
|||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct 194 CCACGACCCACTAATCTCTCTGAAACTCCCAAGTTTCAAACCAAACTACGTCTATCAACT 253
Query 240 TCTCCAGACCCAACTCCACGATCATGACTTGTCCGAGCAAATATCTTGTAAGATTGTCGA 299
|||||| ||||||||||||||||||| | ||||||| |||||||||| ||||||||||||
Sbjct 254 TCTCCATACCCAACTCCACGATCATGTCATGTCCGAACAAATATCTTATAAGATTGTCGA 313
Query 300 AGCCCAACAACGGCAAACAAGTCAAAGTGTTTACTTGCCACAACAACCACCTTTATTCAT 359
||||||||||||||||| |||||||||| ||||||| |||||||||| ||||||||||||
Sbjct 314 AGCCCAACAACGGCAAAGAAGTCAAAGTTTTTACTTTCCACAACAACAACCTTTATTCAT 373
Query 360 AATCGTCTCTGTCAAATTGACACACAAGGTTTACGTCGTTGTGCCTCCGTTGGCAA--CA 417
|| ||||||||||||||||||||||| || ||| ||||||| || ||| || |
Sbjct 374 GATAGTCTCTGTCAAATTGACACACAAAGTATACAACGTTGTG--TC--TTGT-AATTCT 428
Query 418 GATTTGGACCAAGAGATGAGCCAAGGAGAAGAAGAAGAATCGAAGACTTGTGCCATCTGT 477
| |||||||||||||| | ||||| ||||||||||||||| ||||||||||| ||||||
Sbjct 429 GCTTTGGACCAAGAGA-G--CCAAGAAGAAGAAGAAGAATCCAAGACTTGTGCTATCTGT 485
Query 478 TTGGAGGAATT-GTCGACATCCGATGATTACTGCGAGTTGCCTAACT-GCACTCATTGTT 535
|||||| |||| ||||| |||||| |||||||||||| |||||| || | | ||| |||
Sbjct 486 TTGGAG-AATTTGTCGAGATCCGAGGATTACTGCGAGATGCCTA-CTTGTTCGCATAGTT 543
Query 536 TTCATGAACCATGTCTCACTCAGTGGTTGA-TCCGAGGTAATAACTCATGCCCTCTCTGT 594
|||||||||||||||||||||||||||||| || ||| ||||||||| ||||||||||||
Sbjct 544 TTCATGAACCATGTCTCACTCAGTGGTTGACTC-GAGATAATAACTCGTGCCCTCTCTGT 602
Query 595 CGCAAACCTGTTGACAAACAACCACAGTGA 624
|||||||||||||||||||||||| |||||
Sbjct 603 CGCAAACCTGTTGACAAACAACCAGAGTGA 632
> Ahg932498 jgi|Araly1|932498|scaffold_400486.1
Length=656
Score = 667 bits (361), Expect = 0.0
Identities = 551/638 (86%), Gaps = 31/638 (5%)
Strand=Plus/Plus
Query 1 ATGGAAACTGAATCTTTCAAACTCGATGTTCATGTAAAAGCTTTGTCTCAACCTCCGTCG 60
||||| |||||||||||||||||||| |||||||| || |||| ||||||| |||| |||
Sbjct 22 ATGGATACTGAATCTTTCAAACTCGACGTTCATGTTAAGGCTTGGTCTCAAGCTCCATCG 81
Query 61 TTAGGGTTCTTAAGTACGGTAGTAATCAGTC-AATACAGAGAAGTAGAGGAATTTCTCAT 119
| |||||||||||| |||||||||||||||| || |||||||| | ||||||||||||||
Sbjct 82 TCAGGGTTCTTAAGCACGGTAGTAATCAGTCTAA-ACAGAGAATTCGAGGAATTTCTCAT 140
Query 120 TAACAACAAGGATAATTGTGTCACGAGTCTCGGATCTTACCCGGATGATTCTTCTACTTG 179
|||| | || ||| || |||||| |||||||||||||||||| |||||||||| | |
Sbjct 141 TAACGAGAACGATGATAGTGTCATGAGTCTCGGATCTTACCC---TGATTCTTCT-C-T- 194
Query 180 TCACGACCCACTAATCTCTCTGACACTCCCAAGTTTCAAACCAAACGACGTCTATCAACA 239
||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct 195 TCACGACCCACTAATCTCTCTGAAACTCCCAAGTTTCAAACCAAACTACGTCTATCAACT 254
Query 240 TCTCCAGACCCAACTCCACGATCATGACTTGTCCGAGCAAATATCTTGTAAGATTGTCGA 299
|||||| ||||||||||||||||||| ||||||||| |||||| ||| |||| |||||||
Sbjct 255 TCTCCAAACCCAACTCCACGATCATGTCTTGTCCGAACAAATAGCTTATAAGGTTGTCGA 314
Query 300 AGCCCAACAACGGCAAACAAGTCAAAGTGTTTACTTGCCACAACAACCACCTTTATTCAT 359
|| || |||||||||| |||||||||| |||||||||||||||||| ||||||||||||
Sbjct 315 AG-CC--CAACGGCAAAGAAGTCAAAGTTTTTACTTGCCACAACAACAACCTTTATTCAT 371
Query 360 AATCGTCTCTGTCAAATTGACACACAAGGT-T--TAC---GT-CGTTGT-G--C--CTCC 407
|| |||||||||||||||||||| ||||| | || || | |||| | | || |
Sbjct 372 GATAGTCTCTGTCAAATTGACACAGAAGGTATACAACGTTGTGCCTTGTAGTTCTGCTTC 431
Query 408 GTTGGCAACAGATTTGGACCAAGAGATGAGCCAAGGAGAAGAAGAAGAATCGAAGACTTG 467
|||||||||||||||||||| | ||| ||||| | ||||||||||||||||||||||||
Sbjct 432 GTTGGCAACAGATTTGGACC-A-AGA-GAGCC-A--AGAAGAAGAAGAATCGAAGACTTG 485
Query 468 TGCCATCTGTTTGGAGGAAT-TGTCGACATCCGATGATTACTGCGAGTTGCCTAACTGCA 526
|||||||||||||||| ||| |||||| |||||| ||||| ||| || ||||| | |||
Sbjct 486 TGCCATCTGTTTGGAG-AATCTGTCGAGATCCGAGGATTATTGCCAGATGCCTTATTGCT 544
Query 527 CTCATTGTTTTCATGAACCATGTCTCACTCAGTGGTTGATCCGAGGTAATAACTCATGCC 586
|||||||||||||||||| |||| ||||| ||||| || | || ||||||||| ||||
Sbjct 545 CTCATTGTTTTCATGAACGATGTGTCACTAAGTGGGTGGTTGGACATAATAACTCGTGCC 604
Query 587 CTCTCTGTCGCAAACCTGTTGACAAACAACCACAGTGA 624
|||||||||||||||||||||||||| ||| | |||||
Sbjct 605 CTCTCTGTCGCAAACCTGTTGACAAATAACAAGAGTGA 642
> Ahg932851 jgi|Araly1|932851|scaffold_400839.1
Length=659
Score = 172 bits (93), Expect = 2e-42
Identities = 228/291 (78%), Gaps = 18/291 (6%)
Strand=Plus/Plus
Query 1 ATGGAAACTGAATCTTTCAAACTC-GATGTTCATGTAAAAGCTTTGTCTC-AACCTCCGT 58
|||||||| |||| || ||| | |||||| | |||| || ||||| || | |||| |
Sbjct 21 ATGGAAACCAAATCACTC-AACGCTGATGTTAACGTAACAGATTTGTTTCTTA-CTCCAT 78
Query 59 CGTT-AGGGTTCTT-AA-GTACGGTAGTAATCAGTCAATACAGAGAAGTAGAGGAATTTC 115
| || ||| ||||| || | || || |||||| || | | |||||||| |||||||||
Sbjct 79 C-TTCAGGCTTCTTAAACGAAC--TAATAATCATTCGAGAGAGAGAAGTCGAGGAATTTA 135
Query 116 TCATTA-ACAACAAGGATAATTGTGTCACGAGTCTCGGATCTTACCCGGATGATTCTTCT 174
||| || || |||| ||| || |||||||||||||||||||||||||||| | || ||
Sbjct 136 TCA-TAGACGACAACGATGATAGTGTCACGAGTCTCGGATCTTACCCGGAC--T-CTCCT 191
Query 175 ACTTGTCACGACCCACTAATCTCTCTGACACTCCCAAGTTTCAAACCAAACGACGTCTAT 234
||| | |||||||||||||| ||| | | ||| || ||| |||||||| || | |||
Sbjct 192 CCTT--C-CGACCCACTAATCTATCTCAAATTCCAAAACTTCGAACCAAACTACCTATAT 248
Query 235 CAACATCTCCAGACCCAACTCCACGATCATGACTTGTCCGAGCAAATATCT 285
|||| | |||| ||||||||||||||||||| ||||||| | |||||||||
Sbjct 249 CAACTTGTCCATACCCAACTCCACGATCATGTCTTGTCCAAACAAATATCT 299
> Ahg899859 jgi|Araly1|899859|Al_scaffold_0004_509
Length=606
Score = 158 bits (85), Expect = 6e-38
Identities = 267/349 (77%), Gaps = 36/349 (10%)
Strand=Plus/Plus
Query 58 TCGTTA-GGGTTCTTAAGTACG-G-TAGTAATCAGTCAATACAGAGAAGTAGAGGAATTT 114
||| || || ||||||| ||| | || |||||| || | |||| |||| |||||| ||
Sbjct 66 TCGGTATGGCTTCTTAA--ACGAGTTAATAATCATTCGACCCAGAAAAGTCGAGGAA-TT 122
Query 115 C-TCATTA-ACAACAAGGATAATTGTGTCACGAGTCTCGGATCTTACCCGGATGATTCTT 172
| ||| || || |||| ||| || |||||||||||||||||||||||||||| | ||
Sbjct 123 CATCA-TAGACGACAACGATGATAGTGTCACGAGTCTCGGATCTTACCCGGAC--T-CTC 178
Query 173 CTACTTGTCACGACCCACTAATCTCTCTGACACTCCCAAGTTTCAAACCAAACGACGTCT 232
|| ||| | |||||||||||||| ||| | | ||| ||| ||| |||||||| || ||
Sbjct 179 CTCCTT--C-CGACCCACTAATCTATCTCAAATTCCAAAGCTTCGAACCAAACTACCTCC 235
Query 233 ATCAACATCTCCAGACCCAACTCCACGATCATGACTTGTCCGAGCAAATATCTTGTA--A 290
|||||| | |||| |||||||||||||| |||| ||||||| | ||||||||| | | |
Sbjct 236 ATCAACTTGTCCATACCCAACTCCACGACCATGTCTTGTCCAAACAAATATCT-G-ACCA 293
Query 291 GATTGTCG--AA-GCCCAACAACGGCAAACAAGT---CAAAGTGT-T--T-ACTTGCCAC 340
|||||| | || || ||| | | | || |||| |||||| | | | |||||||||
Sbjct 294 GATTGTTGTTAAAGCACAAGA--G-CTAAGAAGTGATCAAAGT-TCTGATCACTTGCCAC 349
Query 341 AACAACCACCTTTATTCATAATCGTCTCTGTCAAATTGACACACAAGGT 389
||||||| | || |||||| ||||| |||| ||| |||| ||||||
Sbjct 350 AACAACC-C-TT-ATTCATGGGAGTCTCCGTCAGATTTACACGCAAGGT 395
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22835627283
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5