BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G43210.1
Length=775
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494683 jgi|Araly1|494683|fgenesh2_kg.8__499__AT5G43210.1 697 0.0
> Ahg494683 jgi|Araly1|494683|fgenesh2_kg.8__499__AT5G43210.1
Length=616
Score = 697 bits (377), Expect = 0.0
Identities = 458/496 (92%), Gaps = 10/496 (2%)
Strand=Plus/Plus
Query 59 AAGC-TCCCGAATT-CAAAAATTTGAAAAATTCACAAACCCAAGTTCCGATTCCATCGTC 116
|||| || || ||| ||||| ||||||||| ||||||||||||||||||||| |||| ||
Sbjct 37 AAGCTTCGCG-ATTGCAAAACTTTGAAAAAATCACAAACCCAAGTTCCGATTTCATCATC 95
Query 117 TTCTT--C-TC---CGCAAGAGAACTCAAAGATTCCCAAATCCAAATCCTGGTCTGTTTA 170
||||| | | ||||||||||||| ||||| |||||||||||||||||||| |||||
Sbjct 96 TTCTTCGCAGCAATCGCAAGAGAACTCGAAGATCCCCAAATCCAAATCCTGGTCCGTTTA 155
Query 171 TCTCATTCTCTCCACGACCGAACCCATCAAAACATATGTCGGAATCACCACCGATTTTTC 230
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 156 TCTCATTCTCTCCACGACCGAACCCATCAAAACATATGTCGGAATCACCACCGATTTTGC 215
Query 231 TCGCCGATTAAAGCAGCACAATGGTGAAATCAGAGGTGGTGCAAAAGCTTCAAGTGCAGG 290
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 216 TCGCCGATTGAAGCAGCACAATGGTGAAATCAGAGGTGGTGCAAAAGCTTCAAGTGCCGG 275
Query 291 AAGACCATGGCTTTGTGCTTGCATTATCACTGGATTCACTTGTTTAAGTCAAGCTTCTTC 350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 276 AAGACCATGGCTTTGTGCTTGCATTATCACTGGATTCACTTGTTTAAGTCAAGCTTCCTC 335
Query 351 GTTTGAATCAAAATGGAAGATCTTTACAAGAAAGTTACCGCGGAGAAAGAAAGACGAAGA 410
||||||||| ||||||||||||||| |||||||||||||||||||||||||||| || ||
Sbjct 336 GTTTGAATCGAAATGGAAGATCTTTTCAAGAAAGTTACCGCGGAGAAAGAAAGATGAGGA 395
Query 411 CATGAGTCAGAGTGATGCTTTGCTACAACACCGTAGGAGAGCTTTAAACAAAGTCGAGGA 470
|||||||| |||||||||||||| |||||||| |||||||| || | |||||||||||
Sbjct 396 GATGAGTCATAGTGATGCTTTGCTTCAACACCGGAGGAGAGCATTGGAGAAAGTCGAGGA 455
Query 471 ATCATTAGACTGTAGTTATCTTGAAACTGACTGGAAAATCTAACCAGGTAACCAAACGAC 530
||||||||| |||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 456 ATCATTAGAATGTAGTCATCTTGAAACTGACTGGAAAATCTAACCAGGTAACCAA-CGAC 514
Query 531 TGACTTAATTAATCAC 546
| ||||||||||||||
Sbjct 515 TAACTTAATTAATCAC 530
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28592187750
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5