BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G43230.1 Length=2796 Score E Sequences producing significant alignments: (Bits) Value Ahg915935 jgi|Araly1|915935|Al_scaffold_0008_686 3011 0.0 Ahg915936 jgi|Araly1|915936|Al_scaffold_0008_687 970 0.0 > Ahg915935 jgi|Araly1|915935|Al_scaffold_0008_686 Length=1884 Score = 3011 bits (1630), Expect = 0.0 Identities = 1798/1882 (96%), Gaps = 0/1882 (0%) Strand=Plus/Plus Query 915 GAACGGAGATGAGAAGAAAGGCTGGAAACATGTAACGCTTAAGCACAGTAACAATGAAGC 974 ||| ||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||| Sbjct 3 GAATGGAGATGAGAAGAAAGGTTGGAAACATGTAACACTTAAGCACAGCAACAATGAAGC 62 Query 975 AGCACTCGTCTCTGAGATCGAGAATCTACTgagagaagaagagagaaagagacagagCAA 1034 |||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 63 AGCACTCGTCTCCGAGATCGAGAATCTACTGAGAGAAGAAGAAAGAAAGAGACAGAGCAA 122 Query 1035 TCAACCGGTCATTGTGAGCGCAGAGATTGATCAGAAACAAAAAGAAGATACAAATGCCTT 1094 ||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| |||| Sbjct 123 TCAACCGGTCATTGTGAGCTCAGAGATTGATCAGAAACAGAAAGAAGATACAAATACCTT 182 Query 1095 TAAGCTCAAGAAACAGTTCTCTGAGATCAAATCTGGTCCTTTATCGTTACCTCCCGATGC 1154 | ||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| Sbjct 183 TCAGCTCAAGAAACAGTTCTCTGAGATCAGATCTGGTCCTGTATCGTTACCTCCCGATGC 242 Query 1155 AGCGAAAAAACAGATGAAACTTCGGACAAATACTCTTGCCTTAGGAAGAAAGACTTTAGG 1214 |||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| Sbjct 243 AGCGAAAAAACAGATGAAACTTCGGACAAACACTCTTGCCTTAGGAAGAAAGACTCTAGG 302 Query 1215 AATGGAAGGTATTCCAAGACTTAAACAGCTTAAGTCTATTCAGTTGCATTTTGACGGACA 1274 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 303 AATGGAAGGTATTCCAAGACTTAAACAGCTTAAGTCTATTCAGTTGCATTTTGACGGAAA 362 Query 1275 CAAAGATGATAGTAGTCACAAAAAGGCGAGTGGAGTGATCAACAAGGTAGGTTTAATAAC 1334 |||||| ||||||||||| |||||||||| |||||||||||||||||||||||||||||| Sbjct 363 CAAAGACGATAGTAGTCAAAAAAAGGCGAATGGAGTGATCAACAAGGTAGGTTTAATAAC 422 Query 1335 TCCGCAAGATTCTAAAACAGAGACGCTTGAAGATGAGCTGAAGGAAGCAGCGGTTCTTGA 1394 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 423 TCCGCAAGATTCTAAAACAGAGACGCTTGAAGATGAGTTGAAGGAAGCAGCGGTTCTTGA 482 Query 1395 AGCAGCTATTTACTCTGTGGTTGCTGAGCATACTAGCTCCATGAGCAAGGTTCATGCTCC 1454 ||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 483 AGCAGCTGTTTACTCTGTGGTTGCTGAGCATAGTAGCTCCATGAGCAAGGTTCATGCTCC 542 Query 1455 AGCTCGTCGTCTTGCTAGGTTTTATCTTCATGCTTGTAAAGGAAATGGCTCAGATCATTC 1514 |||||||||||||||||||||||||||||||||||||||||||||||| || ||||| || Sbjct 543 AGCTCGTCGTCTTGCTAGGTTTTATCTTCATGCTTGTAAAGGAAATGGTTCTGATCAATC 602 Query 1515 TAAGCGAGCCACTGCGGCTAGAGCGGCGGTTTCTGGATTGATATTGGTTTCCAAAGCATG 1574 |||| |||||| |||||||||||| ||||||||||||||||| |||||||| |||||||| Sbjct 603 TAAGAGAGCCAGTGCGGCTAGAGCCGCGGTTTCTGGATTGATCTTGGTTTCGAAAGCATG 662 Query 1575 TGGAAATGATGTTCCAAGGTTAACCTTTTGGCTATCAAATTCGATTGTGCTTAGAGCAAT 1634 |||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 663 TGGAAATGATGTCCCAAGGTTAACCTTTTGGCTATCAAATTCGATTGTTCTTAGAGCAAT 722 Query 1635 TTTAAGCCGCGGTATGGAGAAAATGAAGATTGTCCCTGAAAAGGCTGGTTCAGATGAATG 1694 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 723 TTTAAGCCGCGGTATGGAGAAAATGAAGATTATCCCTGAAAAGGCTGGTTCAGATGAATG 782 Query 1695 GGAAGATCCTCGAGCATTCCTCGCGGCTTTGGAGAAGTTCGAGTCCTGGATATTCTCCCG 1754 ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || Sbjct 783 GGAAGATCCTCGAGCATTCCTTGCGGCTTTGGAGAAGTTCGAGTCCTGGATATTCTCTCG 842 Query 1755 AGTTGTTAAGTCAGTTTGGTGGCAGAGTATGACGCCGCATATGCAATCTCCAGCGGTTAA 1814 ||||||||| || |||||||||||||||||||| |||||||||||||| |||||||||| Sbjct 843 AGTTGTTAAATCTGTTTGGTGGCAGAGTATGACACCGCATATGCAATCAGCAGCGGTTAA 902 Query 1815 AGGATCTATCGCGAGGAAAGTTTCGGGAAAAAGGCGGTTAGGTCACCGGAACCAGGGACT 1874 |||||| ||| |||||||||||||||||||||||||||||||||| ||| ||||||||| Sbjct 903 AGGATCAATCTCGAGGAAAGTTTCGGGAAAAAGGCGGTTAGGTCATAGGACCCAGGGACT 962 Query 1875 CTATGCTATAGAGCTATGGAAAAATGCCTTTAGAGCTGCCTGTGAAAGACTTTGTCCACT 1934 ||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| Sbjct 963 CTATGCTATAGAGCTATGGAAGAATGCCTTTAGAGCTGCCTGCGAAAGACTTTGTCCACT 1022 Query 1935 AAGAGGTTCAAGACAAGAATGTGGTTGTCTACCTATGCTTGCAAAACTGGTAATGGAACA 1994 |||||||| ||||||||| ||||||||||||||||||||||| |||||||| |||||||| Sbjct 1023 AAGAGGTTTAAGACAAGAGTGTGGTTGTCTACCTATGCTTGCTAAACTGGTGATGGAACA 1082 Query 1995 GTTAATCAGTAGACTTGATGTAGCAATGTTCAACGCGATACTCCGTGAGTCAGCGGGTGA 2054 |||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1083 GTTAATTAGTAGACTTGATGTAGCAATGTTCAATGCGATACTCCGTGAGTCAGCGGGTGA 1142 Query 2055 AATGCCGACAGATCCTGTCTCTGATCCGATCAGTGACATAAATGTTCTTCCCATTCCAGC 2114 |||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| Sbjct 1143 AATGCCGACAGATCCTGTATCTGATCCGGTCAGTGACATAAATGTTCTTCCCATTCCAGC 1202 Query 2115 AGGAAAAGCAAGTTTTGGGGCCGGCGCACAACTAAAAAATGCGATTGGAACTTGGTCAAG 2174 ||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| Sbjct 1203 AGGAAAAGCAAGTTTTGGGGCAGGCGCACAACTAAAAAACGCGATTGGAACTTGGTCAAG 1262 Query 2175 ATGGCTTGAGGATCAATTTGAACAAAAGGAGGACAAATCTGGTAGAAACAAAGATGAAGA 2234 ||||||||||||||||||||| |||| ||||||||||||| ||||||||||||||||||| Sbjct 1263 ATGGCTTGAGGATCAATTTGAGCAAAGGGAGGACAAATCTCGTAGAAACAAAGATGAAGA 1322 Query 2235 TAACAATGACAAGGAGAAGCCAGAGTGTGAACATTTCAGATTGTTCCATTTACTCAACTC 2294 ||||||| |||||||||||||||||||||||||||||||| ||||||||||||| ||||| Sbjct 1323 TAACAATAACAAGGAGAAGCCAGAGTGTGAACATTTCAGACTGTTCCATTTACTTAACTC 1382 Query 2295 GTTAGGTGATCTTATGATGCTTCCATTCAAAATGCTTGCAGACAAATCCACAAGAAAAGA 2354 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1383 GTTAGGTGATCTAATGATGCTTCCATTCAAAATGCTTGCAGACAAATCCACAAGAAAAGA 1442 Query 2355 GGTTTGTCCAACCCTTGGTCCACCAATAATAAAGAGAGTTCTTCGAAACTTTGTCCCAGA 2414 |||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1443 GGTTTGTCCAACTCTTGGTCCACCAATAATAAAGAGAGTTCTTCGGAACTTTGTCCCAGA 1502 Query 2415 TGAGTTTAACCCACACAGAATCCCAAGAAGGCTATTCGATGTTCTGAACTCCGAGGGATT 2474 |||||||||||| ||||||||||| |||||||| |||||||||||||||||||||| || Sbjct 1503 TGAGTTTAACCCCCACAGAATCCCTAGAAGGCTTTTCGATGTTCTGAACTCCGAGGTCTT 1562 Query 2475 AACGGAGGAAGACAATGGATGCATCACAGTCTTCCCTTCCGCTGCATCGCCTACGGTCTA 2534 ||| |||||||||| ||| |||||||||||||||||||| ||||||||||||||| |||| Sbjct 1563 AACAGAGGAAGACACTGGTTGCATCACAGTCTTCCCTTCTGCTGCATCGCCTACGATCTA 1622 Query 2535 CCTAATGCCGTCTACAGATTCCATAAAACGCTTCATAGGAGAGTTGAACAATCCGTCCAT 2594 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | Sbjct 1623 CCTAATGCCGTCTACAGATTCCATAAAACGCTTCATTGGAGAGTTGAACAATCCGTCCTT 1682 Query 2595 ATCTGAAACCGGATCATCGGTATTTAAGAAACAATATACCAGCGACGATGAGCTTGATGA 2654 |||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||| Sbjct 1683 ATCTGAAACCGGATCATCGGTATTTAAGAAACAATACACCAGTGACGATGAACTTGATGA 1742 Query 2655 CTTAGATACGTCCATTAACTCTATATTCTCTGCTCCTGGAACAACCAATTCATCAGAGTG 2714 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1743 CTTAGATACATCCATTAACTCTATATTCTCTGCTCCTGGAACAACCAATTCATCAGAGTG 1802 Query 2715 GATGCCGAAAGGATATGGACGCAGAAAGACTGTAAGATATCAACTCCTTAGAGAAATATG 2774 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1803 GATGCCGAAAGGATATGGACGCAGAAAGACTGTAAGATATCAGCTCCTTAGAGAAATATG 1862 Query 2775 GAAAGAAGATGGAATACAATGA 2796 |||||||||||| |||||||| Sbjct 1863 GAAAGAAGATGGGTTACAATGA 1884 > Ahg915936 jgi|Araly1|915936|Al_scaffold_0008_687 Length=675 Score = 970 bits (525), Expect = 0.0 Identities = 607/648 (94%), Gaps = 0/648 (0%) Strand=Plus/Plus Query 250 ATGGTATTGGGTCTTCGGACAAAGAGCCGTAGAGACAATGGAGTATTCGTTGAGTATCTA 309 ||||| ||||||||||| |||||||| ||||||||||||||||| ||||||||||||||| Sbjct 1 ATGGTGTTGGGTCTTCGAACAAAGAGTCGTAGAGACAATGGAGTGTTCGTTGAGTATCTA 60 Query 310 ATCTCAATCAAAGAGCTAAAACCATGGCCAACAAGCCAAGTCCCTGCACAATGCGTCCTT 369 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 ATCTCAATCAAGGAGCTAAAACCATGGCCAACAAGCCAAGTCCCTGCACAATGCGTCCTT 120 Query 370 CTCAAATGGGAAAACGGCGAAAACAATTCAGGCTCCTTCATCGCGGTCGTGGGCAAAGAC 429 |||||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||| Sbjct 121 CTCAAATGGGAAAACGGCGAAAACAACTCAGGCTCTTTCATTGCGGTCGTGGGCAAAGAC 180 Query 430 ACTATCATGTTCAACGAGTCTTTTAGGCTAACATTAACGTTAGAACCCAAAGTTGGGTCC 489 || ||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||| Sbjct 181 ACGATCATGTTCAACGAGTCCTTTAGGCTAACCTTAACGTTAGAACCCAAAGTTGGTTCC 240 Query 490 GACAATAAGTTCCACAAGAATCTTCTTGAACTTCATGTCTACGACGCGAAAAAGAAAGAC 549 |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| Sbjct 241 GACAATAAGTTCCACAAGAATCTTCTTGAACTTCATGTATACGACGCCAAAAAGAAAGAT 300 Query 550 AAGGGCGTCAAGAACAAGCTTCTTGGTACAGCATCGGTCAATCTTGCGGATTTTGGCTTG 609 || ||||||||||||||||||||||||||||| |||||||| || || ||||| ||| || Sbjct 301 AAAGGCGTCAAGAACAAGCTTCTTGGTACAGCCTCGGTCAACCTCGCTGATTTCGGCGTG 360 Query 610 TTGACCAACTCGGTCCCCGTTGGAGCTCCGTTCACTTTCAAGAAAAGCTCAAGGAACGAC 669 ||||| || || |||||||| ||||||||||| ||||||||||||||||| ||||| ||| Sbjct 361 TTGACTAATTCTGTCCCCGTAGGAGCTCCGTTTACTTTCAAGAAAAGCTCGAGGAATGAC 420 Query 670 GCTAGCTCTGAGATTTACCTAACTGTTGAACCGGCCGGAGAGGAGGATTACGATGAAGGA 729 ||||||||||||||||||||||||||||| || ||||||||||| ||||||||||||||| Sbjct 421 GCTAGCTCTGAGATTTACCTAACTGTTGAGCCAGCCGGAGAGGAAGATTACGATGAAGGA 480 Query 730 AATAGGAGTAGCGGTTCGTCGCAGCCGAAGATGAGCTTCTCGAGAAGATCGGTAGATGGC 789 ||| |||||||||||||||||||||||||||||||||| || |||||||| || || || Sbjct 481 AATCGGAGTAGCGGTTCGTCGCAGCCGAAGATGAGCTTTTCAAGAAGATCTGTTGAAGGT 540 Query 790 AGTGAGTTTAGTTTGGCGTCATTGACGGATGACGATGATGATGCTTCGTCAGTGTCTTCT 849 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 541 AGTGAGTTTAGTTTGGCGTCGTTGACGGATGACGATGATGATGCTTCGTCAGTGTCTTCT 600 Query 850 TCGACACGGAGAGTTTCTTTCTCAGCTATGTGTGATGCTAATTCCACG 897 || ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 601 TCTACACGGAGAGTTTCTTTCTCAGCTATGTGTGATGCTAATTCCACG 648 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 105509978650 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5