BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G43230.1
Length=2796
Score E
Sequences producing significant alignments: (Bits) Value
Ahg915935 jgi|Araly1|915935|Al_scaffold_0008_686 3011 0.0
Ahg915936 jgi|Araly1|915936|Al_scaffold_0008_687 970 0.0
> Ahg915935 jgi|Araly1|915935|Al_scaffold_0008_686
Length=1884
Score = 3011 bits (1630), Expect = 0.0
Identities = 1798/1882 (96%), Gaps = 0/1882 (0%)
Strand=Plus/Plus
Query 915 GAACGGAGATGAGAAGAAAGGCTGGAAACATGTAACGCTTAAGCACAGTAACAATGAAGC 974
||| ||||||||||||||||| |||||||||||||| ||||||||||| |||||||||||
Sbjct 3 GAATGGAGATGAGAAGAAAGGTTGGAAACATGTAACACTTAAGCACAGCAACAATGAAGC 62
Query 975 AGCACTCGTCTCTGAGATCGAGAATCTACTgagagaagaagagagaaagagacagagCAA 1034
|||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 63 AGCACTCGTCTCCGAGATCGAGAATCTACTGAGAGAAGAAGAAAGAAAGAGACAGAGCAA 122
Query 1035 TCAACCGGTCATTGTGAGCGCAGAGATTGATCAGAAACAAAAAGAAGATACAAATGCCTT 1094
||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| ||||
Sbjct 123 TCAACCGGTCATTGTGAGCTCAGAGATTGATCAGAAACAGAAAGAAGATACAAATACCTT 182
Query 1095 TAAGCTCAAGAAACAGTTCTCTGAGATCAAATCTGGTCCTTTATCGTTACCTCCCGATGC 1154
| ||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||
Sbjct 183 TCAGCTCAAGAAACAGTTCTCTGAGATCAGATCTGGTCCTGTATCGTTACCTCCCGATGC 242
Query 1155 AGCGAAAAAACAGATGAAACTTCGGACAAATACTCTTGCCTTAGGAAGAAAGACTTTAGG 1214
|||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||
Sbjct 243 AGCGAAAAAACAGATGAAACTTCGGACAAACACTCTTGCCTTAGGAAGAAAGACTCTAGG 302
Query 1215 AATGGAAGGTATTCCAAGACTTAAACAGCTTAAGTCTATTCAGTTGCATTTTGACGGACA 1274
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 303 AATGGAAGGTATTCCAAGACTTAAACAGCTTAAGTCTATTCAGTTGCATTTTGACGGAAA 362
Query 1275 CAAAGATGATAGTAGTCACAAAAAGGCGAGTGGAGTGATCAACAAGGTAGGTTTAATAAC 1334
|||||| ||||||||||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct 363 CAAAGACGATAGTAGTCAAAAAAAGGCGAATGGAGTGATCAACAAGGTAGGTTTAATAAC 422
Query 1335 TCCGCAAGATTCTAAAACAGAGACGCTTGAAGATGAGCTGAAGGAAGCAGCGGTTCTTGA 1394
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 423 TCCGCAAGATTCTAAAACAGAGACGCTTGAAGATGAGTTGAAGGAAGCAGCGGTTCTTGA 482
Query 1395 AGCAGCTATTTACTCTGTGGTTGCTGAGCATACTAGCTCCATGAGCAAGGTTCATGCTCC 1454
||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 483 AGCAGCTGTTTACTCTGTGGTTGCTGAGCATAGTAGCTCCATGAGCAAGGTTCATGCTCC 542
Query 1455 AGCTCGTCGTCTTGCTAGGTTTTATCTTCATGCTTGTAAAGGAAATGGCTCAGATCATTC 1514
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||
Sbjct 543 AGCTCGTCGTCTTGCTAGGTTTTATCTTCATGCTTGTAAAGGAAATGGTTCTGATCAATC 602
Query 1515 TAAGCGAGCCACTGCGGCTAGAGCGGCGGTTTCTGGATTGATATTGGTTTCCAAAGCATG 1574
|||| |||||| |||||||||||| ||||||||||||||||| |||||||| ||||||||
Sbjct 603 TAAGAGAGCCAGTGCGGCTAGAGCCGCGGTTTCTGGATTGATCTTGGTTTCGAAAGCATG 662
Query 1575 TGGAAATGATGTTCCAAGGTTAACCTTTTGGCTATCAAATTCGATTGTGCTTAGAGCAAT 1634
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 663 TGGAAATGATGTCCCAAGGTTAACCTTTTGGCTATCAAATTCGATTGTTCTTAGAGCAAT 722
Query 1635 TTTAAGCCGCGGTATGGAGAAAATGAAGATTGTCCCTGAAAAGGCTGGTTCAGATGAATG 1694
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 723 TTTAAGCCGCGGTATGGAGAAAATGAAGATTATCCCTGAAAAGGCTGGTTCAGATGAATG 782
Query 1695 GGAAGATCCTCGAGCATTCCTCGCGGCTTTGGAGAAGTTCGAGTCCTGGATATTCTCCCG 1754
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 783 GGAAGATCCTCGAGCATTCCTTGCGGCTTTGGAGAAGTTCGAGTCCTGGATATTCTCTCG 842
Query 1755 AGTTGTTAAGTCAGTTTGGTGGCAGAGTATGACGCCGCATATGCAATCTCCAGCGGTTAA 1814
||||||||| || |||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 843 AGTTGTTAAATCTGTTTGGTGGCAGAGTATGACACCGCATATGCAATCAGCAGCGGTTAA 902
Query 1815 AGGATCTATCGCGAGGAAAGTTTCGGGAAAAAGGCGGTTAGGTCACCGGAACCAGGGACT 1874
|||||| ||| |||||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct 903 AGGATCAATCTCGAGGAAAGTTTCGGGAAAAAGGCGGTTAGGTCATAGGACCCAGGGACT 962
Query 1875 CTATGCTATAGAGCTATGGAAAAATGCCTTTAGAGCTGCCTGTGAAAGACTTTGTCCACT 1934
||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 963 CTATGCTATAGAGCTATGGAAGAATGCCTTTAGAGCTGCCTGCGAAAGACTTTGTCCACT 1022
Query 1935 AAGAGGTTCAAGACAAGAATGTGGTTGTCTACCTATGCTTGCAAAACTGGTAATGGAACA 1994
|||||||| ||||||||| ||||||||||||||||||||||| |||||||| ||||||||
Sbjct 1023 AAGAGGTTTAAGACAAGAGTGTGGTTGTCTACCTATGCTTGCTAAACTGGTGATGGAACA 1082
Query 1995 GTTAATCAGTAGACTTGATGTAGCAATGTTCAACGCGATACTCCGTGAGTCAGCGGGTGA 2054
|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1083 GTTAATTAGTAGACTTGATGTAGCAATGTTCAATGCGATACTCCGTGAGTCAGCGGGTGA 1142
Query 2055 AATGCCGACAGATCCTGTCTCTGATCCGATCAGTGACATAAATGTTCTTCCCATTCCAGC 2114
|||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct 1143 AATGCCGACAGATCCTGTATCTGATCCGGTCAGTGACATAAATGTTCTTCCCATTCCAGC 1202
Query 2115 AGGAAAAGCAAGTTTTGGGGCCGGCGCACAACTAAAAAATGCGATTGGAACTTGGTCAAG 2174
||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 1203 AGGAAAAGCAAGTTTTGGGGCAGGCGCACAACTAAAAAACGCGATTGGAACTTGGTCAAG 1262
Query 2175 ATGGCTTGAGGATCAATTTGAACAAAAGGAGGACAAATCTGGTAGAAACAAAGATGAAGA 2234
||||||||||||||||||||| |||| ||||||||||||| |||||||||||||||||||
Sbjct 1263 ATGGCTTGAGGATCAATTTGAGCAAAGGGAGGACAAATCTCGTAGAAACAAAGATGAAGA 1322
Query 2235 TAACAATGACAAGGAGAAGCCAGAGTGTGAACATTTCAGATTGTTCCATTTACTCAACTC 2294
||||||| |||||||||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct 1323 TAACAATAACAAGGAGAAGCCAGAGTGTGAACATTTCAGACTGTTCCATTTACTTAACTC 1382
Query 2295 GTTAGGTGATCTTATGATGCTTCCATTCAAAATGCTTGCAGACAAATCCACAAGAAAAGA 2354
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1383 GTTAGGTGATCTAATGATGCTTCCATTCAAAATGCTTGCAGACAAATCCACAAGAAAAGA 1442
Query 2355 GGTTTGTCCAACCCTTGGTCCACCAATAATAAAGAGAGTTCTTCGAAACTTTGTCCCAGA 2414
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1443 GGTTTGTCCAACTCTTGGTCCACCAATAATAAAGAGAGTTCTTCGGAACTTTGTCCCAGA 1502
Query 2415 TGAGTTTAACCCACACAGAATCCCAAGAAGGCTATTCGATGTTCTGAACTCCGAGGGATT 2474
|||||||||||| ||||||||||| |||||||| |||||||||||||||||||||| ||
Sbjct 1503 TGAGTTTAACCCCCACAGAATCCCTAGAAGGCTTTTCGATGTTCTGAACTCCGAGGTCTT 1562
Query 2475 AACGGAGGAAGACAATGGATGCATCACAGTCTTCCCTTCCGCTGCATCGCCTACGGTCTA 2534
||| |||||||||| ||| |||||||||||||||||||| ||||||||||||||| ||||
Sbjct 1563 AACAGAGGAAGACACTGGTTGCATCACAGTCTTCCCTTCTGCTGCATCGCCTACGATCTA 1622
Query 2535 CCTAATGCCGTCTACAGATTCCATAAAACGCTTCATAGGAGAGTTGAACAATCCGTCCAT 2594
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
Sbjct 1623 CCTAATGCCGTCTACAGATTCCATAAAACGCTTCATTGGAGAGTTGAACAATCCGTCCTT 1682
Query 2595 ATCTGAAACCGGATCATCGGTATTTAAGAAACAATATACCAGCGACGATGAGCTTGATGA 2654
|||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||
Sbjct 1683 ATCTGAAACCGGATCATCGGTATTTAAGAAACAATACACCAGTGACGATGAACTTGATGA 1742
Query 2655 CTTAGATACGTCCATTAACTCTATATTCTCTGCTCCTGGAACAACCAATTCATCAGAGTG 2714
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1743 CTTAGATACATCCATTAACTCTATATTCTCTGCTCCTGGAACAACCAATTCATCAGAGTG 1802
Query 2715 GATGCCGAAAGGATATGGACGCAGAAAGACTGTAAGATATCAACTCCTTAGAGAAATATG 2774
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1803 GATGCCGAAAGGATATGGACGCAGAAAGACTGTAAGATATCAGCTCCTTAGAGAAATATG 1862
Query 2775 GAAAGAAGATGGAATACAATGA 2796
|||||||||||| ||||||||
Sbjct 1863 GAAAGAAGATGGGTTACAATGA 1884
> Ahg915936 jgi|Araly1|915936|Al_scaffold_0008_687
Length=675
Score = 970 bits (525), Expect = 0.0
Identities = 607/648 (94%), Gaps = 0/648 (0%)
Strand=Plus/Plus
Query 250 ATGGTATTGGGTCTTCGGACAAAGAGCCGTAGAGACAATGGAGTATTCGTTGAGTATCTA 309
||||| ||||||||||| |||||||| ||||||||||||||||| |||||||||||||||
Sbjct 1 ATGGTGTTGGGTCTTCGAACAAAGAGTCGTAGAGACAATGGAGTGTTCGTTGAGTATCTA 60
Query 310 ATCTCAATCAAAGAGCTAAAACCATGGCCAACAAGCCAAGTCCCTGCACAATGCGTCCTT 369
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 ATCTCAATCAAGGAGCTAAAACCATGGCCAACAAGCCAAGTCCCTGCACAATGCGTCCTT 120
Query 370 CTCAAATGGGAAAACGGCGAAAACAATTCAGGCTCCTTCATCGCGGTCGTGGGCAAAGAC 429
|||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||
Sbjct 121 CTCAAATGGGAAAACGGCGAAAACAACTCAGGCTCTTTCATTGCGGTCGTGGGCAAAGAC 180
Query 430 ACTATCATGTTCAACGAGTCTTTTAGGCTAACATTAACGTTAGAACCCAAAGTTGGGTCC 489
|| ||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||
Sbjct 181 ACGATCATGTTCAACGAGTCCTTTAGGCTAACCTTAACGTTAGAACCCAAAGTTGGTTCC 240
Query 490 GACAATAAGTTCCACAAGAATCTTCTTGAACTTCATGTCTACGACGCGAAAAAGAAAGAC 549
|||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 241 GACAATAAGTTCCACAAGAATCTTCTTGAACTTCATGTATACGACGCCAAAAAGAAAGAT 300
Query 550 AAGGGCGTCAAGAACAAGCTTCTTGGTACAGCATCGGTCAATCTTGCGGATTTTGGCTTG 609
|| ||||||||||||||||||||||||||||| |||||||| || || ||||| ||| ||
Sbjct 301 AAAGGCGTCAAGAACAAGCTTCTTGGTACAGCCTCGGTCAACCTCGCTGATTTCGGCGTG 360
Query 610 TTGACCAACTCGGTCCCCGTTGGAGCTCCGTTCACTTTCAAGAAAAGCTCAAGGAACGAC 669
||||| || || |||||||| ||||||||||| ||||||||||||||||| ||||| |||
Sbjct 361 TTGACTAATTCTGTCCCCGTAGGAGCTCCGTTTACTTTCAAGAAAAGCTCGAGGAATGAC 420
Query 670 GCTAGCTCTGAGATTTACCTAACTGTTGAACCGGCCGGAGAGGAGGATTACGATGAAGGA 729
||||||||||||||||||||||||||||| || ||||||||||| |||||||||||||||
Sbjct 421 GCTAGCTCTGAGATTTACCTAACTGTTGAGCCAGCCGGAGAGGAAGATTACGATGAAGGA 480
Query 730 AATAGGAGTAGCGGTTCGTCGCAGCCGAAGATGAGCTTCTCGAGAAGATCGGTAGATGGC 789
||| |||||||||||||||||||||||||||||||||| || |||||||| || || ||
Sbjct 481 AATCGGAGTAGCGGTTCGTCGCAGCCGAAGATGAGCTTTTCAAGAAGATCTGTTGAAGGT 540
Query 790 AGTGAGTTTAGTTTGGCGTCATTGACGGATGACGATGATGATGCTTCGTCAGTGTCTTCT 849
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 541 AGTGAGTTTAGTTTGGCGTCGTTGACGGATGACGATGATGATGCTTCGTCAGTGTCTTCT 600
Query 850 TCGACACGGAGAGTTTCTTTCTCAGCTATGTGTGATGCTAATTCCACG 897
|| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 TCTACACGGAGAGTTTCTTTCTCAGCTATGTGTGATGCTAATTCCACG 648
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 105509978650
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5