BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G43240.1 Length=1671 Score E Sequences producing significant alignments: (Bits) Value Ahg331073 jgi|Araly1|331073|fgenesh1_pm.C_scaffold_8000416 1637 0.0 Ahg892101 jgi|Araly1|892101|Al_scaffold_0006_97 1247 0.0 > Ahg331073 jgi|Araly1|331073|fgenesh1_pm.C_scaffold_8000416 Length=1542 Score = 1637 bits (886), Expect = 0.0 Identities = 1349/1567 (86%), Gaps = 53/1567 (3%) Strand=Plus/Plus Query 42 ATGTCAGCTACTTTGAAGAATCCGGTGATTAAGTTGAAACTACTCATAGATGAAGAGAAA 101 ||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGTCAGATGCTTTGAAGAATCCGGTGATTAAGTTGAAACTACTCATAGATGAAGAGAAA 60 Query 102 AACAAAGTTGTATTTGTTGAGGCGGGTAAAGATTTTGTCGATTTACTCTTTAGttttttt 161 ||||| |||||||| | |||| |||||||||||||||||||| |||||||||||||| | Sbjct 61 AACAAGGTTGTATTCGCTGAGACGGGTAAAGATTTTGTCGATATACTCTTTAGTTTTATG 120 Query 162 ACTTTGCCAATGGGAACGATTGTTAGATTGCTGGAGATGTATAAGAAGTCACAGAA-AAT 220 || ||||||||||||| ||||||||||||| |||||||| || |||||||||| | ||| Sbjct 121 ACGTTGCCAATGGGAAAGATTGTTAGATTGATGGAGATGCATCAGAAGTCACA-ATCAAT 179 Query 221 AGCAATAGGCTGTTTCAGCAATATATATGCAAGTGTTGTGAGTATGGGCATTGA-GCATT 279 | ||||||||||||||| |||||| |||| ||||||| ||||||||||||| || ||||| Sbjct 180 ATCAATAGGCTGTTTCAACAATATCTATGGAAGTGTTTTGAGTATGGGCAT-GAAGCATT 238 Query 280 TCTTGACTGAAGCTTGTAAGCAAATGCTTTTGTATCCGGGCAGTTTGAATCATGAGAAAT 339 || |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 239 TCAGGACTGAAGCTTGTAAGCAAATGCTTTTGTATCCGGGCAGTTTGAATCAGGAGAAAT 298 Query 340 GTCGAAACCTTAAGCTGAGGGTAGATGATTCCGAG-GCTACCAAGTATTTCGTGTGTCCT 398 |||||||||| ||| | ||| |||||||||| ||| | ||| |||| |||| | || ||| Sbjct 299 GTCGAAACCTCAAGATAAGGATAGATGATTCTGAGCG-TACAAAGTGTTTCATATGCCCT 357 Query 399 AAGTTTGTG-GAA-CGTGAGCAATGTACTGAAA-GTTACAGCAATTTTAATACCTCGAGA 455 | ||||| | ||| || | ||||||| | ||| | || |||||||||||||| |||||| Sbjct 358 ATGTTTGAGCGAAGCG-G-GCAATGTTGT-AAATGGTATAGCAATTTTAATACATCGAGA 414 Query 456 TGTAGCTGTGGTGT-TTTGATGAATGAAGTGACTCAGCTTGATGGAAGAGG-AGGCCTAG 513 ||||||||||| | ||||||| ||||||||| |||| || | ||| |||| || || Sbjct 415 TGTAGCTGTGG-GAATTTGATGGATGAAGTGATTCAGTTTCAAGGA-GAGGGAGTTGGAG 472 Query 514 C--CAGTGCAGGAAATGGTGTTGAAGGTGGAGTATTTGTTAGGAGTGATCATACTTCATT 571 | |||| ||||||||||| |||||||||||||||||| |||||||||||||||||||| Sbjct 473 CTACAGT--AGGAAATGGTGCTGAAGGTGGAGTATTTGTGAGGAGTGATCATACTTCATT 530 Query 572 CATGATCACTGATGATTTGAAAGTGGAAATTACCTCTGTT-AGGTTGACACTTAATGTTC 630 | | ||||| |||||||||||||||||| ||| ||||||| || || |||||||| |||| Sbjct 531 CGTAATCACCGATGATTTGAAAGTGGAAGTTAGCTCTGTTGAG-TTAACACTTAACGTTC 589 Query 631 TTAAAGATCTTGGCTACG-TAGATTGTGAA-AAGTTGGATGAGAAGATTCATGACGTTAA 688 ||||||||||||||||| | |||||| || ||||||| ||||| |||| | || |||| Sbjct 590 TTAAAGATCTTGGCTACACT-GATTGT-AATAAGTTGGTTGAGATGATTTACAACTTTAA 647 Query 689 TCT-CGAAGAGGTACCGACTTTGCTGGAGTGTTTGT-CTACATCGGATAATCCATTGACC 746 || |||||||||| | |||||| ||||||| || | | |||||||||| |||||||||| Sbjct 648 -CTTCGAAGAGGTAGCAACTTTGTTGGAGTGCTTATTC-ACATCGGATACTCCATTGACC 705 Query 747 GATACATTTCTGAAAAAGAAAAGTTCATATAGTACAAAGAGGATTCAGAAATTGCCGAGT 806 ||||||||||||||||||||||| |||||| | | ||||| ||||| ||| || |||| Sbjct 706 GATACATTTCTGAAAAAGAAAAGCTCATATGGCATGAAGAGAATTCACAAACCGCTGAGT 765 Query 807 CCTGGCCTCTGTGAAGATAGAGAGGAATCAACACCTGACCAAACGATTACACTAAATG-- 864 |||| |||| ||||||| ||||||||||||| | |||| ||||||||||| ||||||| Sbjct 766 CCTGCCCTCCGTGAAGAAAGAGAGGAATCAAAAGCTGATCAAACGATTACGCTAAATGCC 825 Query 865 T-TGT-A--AAGAAGGAAGGAAACATTCTGTTTGTTGAATGTGGTGATGACTTTGTTGAT 920 | ||| | ||||||||||| ||||||||||||||||||||||| || || ||||||||| Sbjct 826 TATGTTAGGAAGAAGGAAGGGAACATTCTGTTTGTTGAATGTGGCGAAGATTTTGTTGAT 885 Query 921 CTTCTCTTCACTTTTCTTGCTATACCTCTAGAATCTGCATGGGGAATAGCTGGCGATGGA 980 |||||||| |||||||||||||| ||||||||||||| |||||||||||||||| ||||| Sbjct 886 CTTCTCTTTACTTTTCTTGCTATGCCTCTAGAATCTGTATGGGGAATAGCTGGCAATGGA 945 Query 981 ATCATCATTGGATGCATTGGAAACTTGAGCAAAAGCTTTAAGGACTTAAGTGTTGATCCC 1040 |||||| |||||||||||||||||||| ||| |||||||||||| |||||| ||| | | Sbjct 946 ATCATCTTTGGATGCATTGGAAACTTGTGCAGAAGCTTTAAGGATTTAAGTATTGTTTCT 1005 Query 1041 GG-ACGAGAAGCTAAATGTGTTCTTCCTCATTACTACAAGTGTCAGAAGCAGCTACTTGA 1099 | | |||||||||||||||| |||||||| |||||||||||||| |||||||| ||||| Sbjct 1006 AGTA-GAGAAGCTAAATGTGTACTTCCTCACTACTACAAGTGTCATAAGCAGCTTCTTGA 1064 Query 1100 TGCTGTCACCACCC-ATAAGCCACCGACTTTCTACTTGT-ATGTGTCCTCCATGGCTTCG 1157 || |||||| |||| || ||||||| |||| |||| || |||| |||| | | | | | Sbjct 1065 TGTTGTCAC-ACCCCATGAGCCACCAACTTACTACA-GTTATGTTTCCTTC-TC-CGTGG 1120 Query 1158 AATCATATTAGAGAGTACCGTTTGTCAGAAGACTCC-AGTAAGCCACTTGTTTATTTTTG 1216 | |||| ||||||||||| |||||| ||| |||| | |||||||||||||||| || Sbjct 1121 A-TCATTTTAGAGAGTACAATTTGTCTGAAAACTCTGA-TAAGCCACTTGTTTATGAGTG 1178 Query 1217 GGATGAACTCATGCCCATGATTTCGATAGATCCAAAATCTAAAGGT-AGTACTAACACTA 1275 |||| |||| ||||| ||||||||||||||||||||||| ||||| | | |||||||| Sbjct 1179 GGATAAACTTGTGCCCGTGATTTCGATAGATCCAAAATCTGAAGGTGA-TGGTAACACTA 1237 Query 1276 CTGATGAGTCAACAATACCCAGTGGTGGCTTTATGAAGAGAGGGACAAAGTTTATGATAA 1335 |||||||||||||| | | |||||||| ||||||||||||||||||||||||||| | | Sbjct 1238 GTGATGAGTCAACAACATCTAGTGGTGGATTTATGAAGAGAGGGACAAAGTTTATGGTGA 1297 Query 1336 CAGATGATTTGATCATCACACCTTTGAATTCAACCTCAACCATTGGATTGGTAAAAGAAA 1395 |||||||||||||||| ||||||| ||||||||||||||||||||| || |||| |||| Sbjct 1298 CAGATGATTTGATCATTACACCTTCAAATTCAACCTCAACCATTGGACTGCTAAAGGAAA 1357 Query 1396 AACAGATCCGATTAGATGATGTCGAGGTTCAAGAGATCATCATTAGAAAAGAAGAGGCCA 1455 ||||| |||| ||||| ||||| ||| |||||| ||||| |||||| ||||||||||||| Sbjct 1358 AACAGGTCCGGTTAGACGATGTTGAGATTCAAGTGATCACCATTAGGAAAGAAGAGGCCA 1417 Query 1456 TTAGGTTATTACAAGCTTCATTGGTGACATGTTCTGCCTTAAGCACTGGTCTTCTAGCTA 1515 ||||||||||| |||||||||||||||||| |||||||||||||||| |||||||||||| Sbjct 1418 TTAGGTTATTAGAAGCTTCATTGGTGACATTTTCTGCCTTAAGCACTAGTCTTCTAGCTA 1477 Query 1516 TAGAA-TCAGCTTCAACAAGTGTTCCTCAAAGCGCAAATTTG-AAGAAGCCAAAGATTGA 1573 | ||| | |||||||||||||||||||||||| | | ||| ||||||||||||||||| Sbjct 1478 TGGAAATT-GCTTCAACAAGTGTTCCTCAAAGC-CGACTTTTTAAGAAGCCAAAGATTGA 1535 Query 1574 GACTTGA 1580 ||||||| Sbjct 1536 GACTTGA 1542 > Ahg892101 jgi|Araly1|892101|Al_scaffold_0006_97 Length=1551 Score = 1247 bits (675), Expect = 0.0 Identities = 1293/1581 (82%), Gaps = 83/1581 (5%) Strand=Plus/Plus Query 42 ATGTCAGCT-ACTTTGAAGAATCCGGTGATTAAGTTGAAACTACTCATAGATGAAGAGAA 100 ||||||| | | |||| ||||| |||||||||| ||||| |||||||||||||||||||| Sbjct 1 ATGTCAGATGA-TTTGGAGAATTCGGTGATTAACTTGAAGCTACTCATAGATGAAGAGAA 59 Query 101 AAACAAAGTTGTATTTGTTGAGGCGGGTAAAGATTTTGTCGATTTACTCTTTAGtttttt 160 ||||||||||||||| | |||||| ||| ||||||| |||||| |||||||||| |||| Sbjct 60 AAACAAAGTTGTATTCGCTGAGGCTGGTCAAGATTTCGTCGATATACTCTTTAGCTTTTC 119 Query 161 tACTTTGCCAATGGGAACGATTGTTAGATTGCTGGAGATGTATAAGAAGTCACAGAAAAT 220 ||||||||||||||||| ||||||||||||||||||||| || | |||||| || ||| Sbjct 120 GACTTTGCCAATGGGAACAATTGTTAGATTGCTGGAGATGCATCACAAGTCAAAGGCAAT 179 Query 221 AGCAATAGGCTGTTTCAGCAATATATATGCAAGTGTTGTGAGTATGGGCATTGA-GCATT 279 ||| |||| ||||||| || || |||| |||||||| |||||||| || || ||||| Sbjct 180 AGCCGTAGGTTGTTTCAATAACATCTATGGGAGTGTTGTTAGTATGGGAAT-GAAGCATT 238 Query 280 TCT-TGACTGAAGCTTGTAAGCAAATGCTTTTGTATCCGGGCAGTTTGAATCATGAGAAA 338 || | ||||||||||| ||||||||||||||||||||||| ||||||||||| |||||| Sbjct 239 TCAGT-ACTGAAGCTTGCAAGCAAATGCTTTTGTATCCGGGGAGTTTGAATCAGGAGAAA 297 Query 339 TGTCGAAACCTTAAGCTGAGGGTAGATGATTCCGAGGCTACCAAGTATTTCGTGTGTCCT 398 |||| ||| ||||||||| | | ||||||||||||||||| || | |||| |||| ||| Sbjct 298 TGTCAAAAGATTAAGCTGAAGATTGATGATTCCGAGGCTACTAAATGTTTCATGTGCCCT 357 Query 399 AAGTTTGTG-GAA-CGTGAGCAATGTACTGAAAGT-TACAGCAATTTTAATACCTCGAGA 455 | ||||||| ||| || || ||||||| | |||| || |||||||||||||||||||| Sbjct 358 ATGTTTGTGCGAAGCG-GA-CAATGTAGT-AAAGGGTATAGCAATTTTAATACCTCGAGG 414 Query 456 TGTAGCTGTGGTGT-TTTGATGAATGAAGTGACTCAGCTTGATGGAAGA-GGAGGCCTAG 513 ||||||||||| | ||||||| ||| ||||| |||| || | ||| || ||||||| || Sbjct 415 TGTAGCTGTGG-GAATTTGATGGATGCAGTGATTCAGTTTCAAGGA-GAAGGAGGCCGAG 472 Query 514 CCAGTGCAGGAAATGGTGTTGAAGGTGGAGTATTTGTTAGGAGTGATCATACTTCATTCA 573 || | ||||| ||||||||||||||||||||||| |||| || |||||||||||||| Sbjct 473 GAAGCGTGGGAAAAGGTGTTGAAGGTGGAGTATTTGTGAGGAATGGTCATACTTCATTCA 532 Query 574 TGATCACTGATGATTTGAAAGTGGAAATTACCTCTGTTAGGTTGACACTTAATGTTCTTA 633 | ||||||||||||||||||||| || ||| ||| ||| ||| |||||||| ||||||| Sbjct 533 TAATCACTGATGATTTGAAAGTGCAAGTTAACTCAGTTGGGTCAACACTTAAGGTTCTTA 592 Query 634 AAGATCTTGGCTACGTAGATTGTGAA-AAGTTGGATGAGAA-GATTCAT-GACGTTAATC 690 ||||||||||||| | |||||| || ||||||| ||| || ||||| | || ||||||| Sbjct 593 AAGATCTTGGCTATGCAGATTGC-AATAAGTTGGTTGA-AATGATTC-TCGAGGTTAATC 649 Query 691 TCGAAGAGGTACCGACTTTGCTGGAGTGTTTGT-CTACATCGGATAATCCATTGACCGAT 749 || |||||||| |||||||||||| |||||| | | |||||||||| |||||||| |||| Sbjct 650 TCCAAGAGGTAGCGACTTTGCTGGTGTGTTTATTC-ACATCGGATACTCCATTGAGCGAT 708 Query 750 ACATTTCTGAAAAAGAAAAGTTCATATAGTACAAAGAGGATTCAGAAATTGCCGAGTCCT 809 |||||||||||||||||||| |||| | ||| |||| |||||| |||| |||||||||| Sbjct 709 ACATTTCTGAAAAAGAAAAGCTCATGTGGTATGAAGAAGATTCATAAATGGCCGAGTCCT 768 Query 810 GGC-CTCTGTGAAGATAGAGAGGAATCAACACCTGACCAAACGATTACACTAAATG--T- 865 | ||| |||| |||||||||||| ||| | |||| |||||||| || || |||| | Sbjct 769 T-CTCTCAGTGAGGATAGAGAGGAAACAAAAGCTGATCAAACGATAACGCTGAATGCATA 827 Query 866 TGTAAAGAAGGAAGGAA---A-CATTCTGTTTGTTGAATGTGGTGATGACTTTGTTGATC 921 ||| | |||||||| || | |||||| | ||||||||||||||| ||||||||||||| Sbjct 828 TGTTAGGAAGGAAG-AAGGGAGCATTCTATATGTTGAATGTGGTGAAGACTTTGTTGATC 886 Query 922 TTCTCTTCACTTTTCTTGCTATACCTCTAGAATCTGCATGGGGAATAGCTGGC-GATGGA 980 |||| ||| ||||||||||||| ||||| ||||||| ||||| ||| | ||| || ||| Sbjct 887 TTCTTTTCTCTTTTCTTGCTATGCCTCTGGAATCTGTATGGGAAATCTCGGGCAGA-GGA 945 Query 981 ATCATCATTGGATGCATTGGAAACTTGAGCAAAAGCTTTAAGGACTTAAGTGTTGATCCC 1040 |||||| |||||||||||||||||||| |||||||||| ||||| || ||||||||| || Sbjct 946 ATCATCCTTGGATGCATTGGAAACTTGTGCAAAAGCTTCAAGGATTTGAGTGTTGATTCC 1005 Query 1041 GGACGAGAAGCT--A------AA-TGTGTTCTTCCTCATTACTACAAGTGTCAGAAGCAG 1091 ||| |||||||| | || |||||||||||||||||||||||||||||||||||| Sbjct 1006 GGAAGAGAAGCTTCAGCTTTTAAATGTGTTCTTCCTCATTACTACAAGTGTCAGAAGCAG 1065 Query 1092 CTACT---TGATGCTGTCACCACCCATAAGCCACCGACTT-TCTACTTGTATGTG-TCCT 1146 || || ||| | |||||| ||||| ||||||| |||| | ||| || | | |||| Sbjct 1066 CTGCTAAATGAGGTTGTCACTACCCAGCAGCCACCAACTTAT-TACC-GTTTTTTATCCT 1123 Query 1147 CCATGGCT-TCGAATCATATTAGAGAGTACCGTTTGTCAGAAGACTCCAGTAAGCCACTT 1205 | | || | || |||| ||||||||||| ||||||| ||| |||| |||||| |||| Sbjct 1124 TC-T--CTGTGGA-TCATTTTAGAGAGTACTGTTTGTCTGAAAACTCTGGTAAGCGACTT 1179 Query 1206 GTTTATTTTTGGGATGAACTCATGCCCATGATTTCGATAGATCCAAAATCTAAAG--GTA 1263 || ||| |||||| ||||| |||| ||| ||||||||| |||||| ||| | | Sbjct 1180 GTGTATGACTGGGATAAACTCGTGCCTGTGACTTCGATAGACCCAAAA---AAACCCGAA 1236 Query 1264 GTACTAAC-ACTACTGATGAGTCAACAATACCCAGTGGTGGCTTTATGAAGAGAGGGACA 1322 | | ||| || |||| ||| |||| |||| ||| |||||||||||||| Sbjct 1237 GG-C-AACGAC-ACTGCTGAATCAA---------GTGGA---TTTGTGAAGAGAGGGACA 1281 Query 1323 AAGTTTATGATAACAGATGATTTGATCATCACACCTTTGAATTCAACCTCAACCATTGGA 1382 ||||| ||| | ||||||||| |||||||||| |||| ||| |||||||||||||||||| Sbjct 1282 AAGTTCATGGTGACAGATGATCTGATCATCACTCCTTCGAACTCAACCTCAACCATTGGA 1341 Query 1383 TTGGTAAAAGAAAAACAGATCCGATTAGATGATGTCGAGGTTCAAGAGATCA-TCATTAG 1441 || |||| || ||||||| |||| ||||||| || || | | || ||||| | || | Sbjct 1342 TTCTTAAAGGAGAAACAGACCCGACTAGATGAAGTGGAAATACGAGTGATCAAT-ATGAC 1400 Query 1442 AAAAGAAGAGGCCATTAGGTTATTACAAGCTTCATTGGTGACATGTTCTGCCTTAAGCAC 1501 ||||||||||||||| | ||||| ||||||| ||||||||| |||||||||||||| Sbjct 1401 AAAAGAAGAGGCCATCATATTATTGGGAGCTTCAATGGTGACATCCTCTGCCTTAAGCAC 1460 Query 1502 TGGTCTTCTAGCTATAGAATCAGCTTCAACAAGTGTTCCTCAAAGC-GCAAATTTGAAGA 1560 |||||| |||||||||||||||||||||||||||| ||||||| || | ||| |||| Sbjct 1461 TGGTCTGCTAGCTATAGAATCAGCTTCAACAAGTGATCCTCAATGCCGGTTCTTT-AAGA 1519 Query 1561 AGCCAAAGATTGAGACTTGAG 1581 |||| ||||||||| || ||| Sbjct 1520 AGCCGAAGATTGAGTCT-GAG 1539 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 62658453025 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5