BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G43240.1
Length=1671
Score E
Sequences producing significant alignments: (Bits) Value
Ahg331073 jgi|Araly1|331073|fgenesh1_pm.C_scaffold_8000416 1637 0.0
Ahg892101 jgi|Araly1|892101|Al_scaffold_0006_97 1247 0.0
> Ahg331073 jgi|Araly1|331073|fgenesh1_pm.C_scaffold_8000416
Length=1542
Score = 1637 bits (886), Expect = 0.0
Identities = 1349/1567 (86%), Gaps = 53/1567 (3%)
Strand=Plus/Plus
Query 42 ATGTCAGCTACTTTGAAGAATCCGGTGATTAAGTTGAAACTACTCATAGATGAAGAGAAA 101
||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGTCAGATGCTTTGAAGAATCCGGTGATTAAGTTGAAACTACTCATAGATGAAGAGAAA 60
Query 102 AACAAAGTTGTATTTGTTGAGGCGGGTAAAGATTTTGTCGATTTACTCTTTAGttttttt 161
||||| |||||||| | |||| |||||||||||||||||||| |||||||||||||| |
Sbjct 61 AACAAGGTTGTATTCGCTGAGACGGGTAAAGATTTTGTCGATATACTCTTTAGTTTTATG 120
Query 162 ACTTTGCCAATGGGAACGATTGTTAGATTGCTGGAGATGTATAAGAAGTCACAGAA-AAT 220
|| ||||||||||||| ||||||||||||| |||||||| || |||||||||| | |||
Sbjct 121 ACGTTGCCAATGGGAAAGATTGTTAGATTGATGGAGATGCATCAGAAGTCACA-ATCAAT 179
Query 221 AGCAATAGGCTGTTTCAGCAATATATATGCAAGTGTTGTGAGTATGGGCATTGA-GCATT 279
| ||||||||||||||| |||||| |||| ||||||| ||||||||||||| || |||||
Sbjct 180 ATCAATAGGCTGTTTCAACAATATCTATGGAAGTGTTTTGAGTATGGGCAT-GAAGCATT 238
Query 280 TCTTGACTGAAGCTTGTAAGCAAATGCTTTTGTATCCGGGCAGTTTGAATCATGAGAAAT 339
|| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 239 TCAGGACTGAAGCTTGTAAGCAAATGCTTTTGTATCCGGGCAGTTTGAATCAGGAGAAAT 298
Query 340 GTCGAAACCTTAAGCTGAGGGTAGATGATTCCGAG-GCTACCAAGTATTTCGTGTGTCCT 398
|||||||||| ||| | ||| |||||||||| ||| | ||| |||| |||| | || |||
Sbjct 299 GTCGAAACCTCAAGATAAGGATAGATGATTCTGAGCG-TACAAAGTGTTTCATATGCCCT 357
Query 399 AAGTTTGTG-GAA-CGTGAGCAATGTACTGAAA-GTTACAGCAATTTTAATACCTCGAGA 455
| ||||| | ||| || | ||||||| | ||| | || |||||||||||||| ||||||
Sbjct 358 ATGTTTGAGCGAAGCG-G-GCAATGTTGT-AAATGGTATAGCAATTTTAATACATCGAGA 414
Query 456 TGTAGCTGTGGTGT-TTTGATGAATGAAGTGACTCAGCTTGATGGAAGAGG-AGGCCTAG 513
||||||||||| | ||||||| ||||||||| |||| || | ||| |||| || ||
Sbjct 415 TGTAGCTGTGG-GAATTTGATGGATGAAGTGATTCAGTTTCAAGGA-GAGGGAGTTGGAG 472
Query 514 C--CAGTGCAGGAAATGGTGTTGAAGGTGGAGTATTTGTTAGGAGTGATCATACTTCATT 571
| |||| ||||||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct 473 CTACAGT--AGGAAATGGTGCTGAAGGTGGAGTATTTGTGAGGAGTGATCATACTTCATT 530
Query 572 CATGATCACTGATGATTTGAAAGTGGAAATTACCTCTGTT-AGGTTGACACTTAATGTTC 630
| | ||||| |||||||||||||||||| ||| ||||||| || || |||||||| ||||
Sbjct 531 CGTAATCACCGATGATTTGAAAGTGGAAGTTAGCTCTGTTGAG-TTAACACTTAACGTTC 589
Query 631 TTAAAGATCTTGGCTACG-TAGATTGTGAA-AAGTTGGATGAGAAGATTCATGACGTTAA 688
||||||||||||||||| | |||||| || ||||||| ||||| |||| | || ||||
Sbjct 590 TTAAAGATCTTGGCTACACT-GATTGT-AATAAGTTGGTTGAGATGATTTACAACTTTAA 647
Query 689 TCT-CGAAGAGGTACCGACTTTGCTGGAGTGTTTGT-CTACATCGGATAATCCATTGACC 746
|| |||||||||| | |||||| ||||||| || | | |||||||||| ||||||||||
Sbjct 648 -CTTCGAAGAGGTAGCAACTTTGTTGGAGTGCTTATTC-ACATCGGATACTCCATTGACC 705
Query 747 GATACATTTCTGAAAAAGAAAAGTTCATATAGTACAAAGAGGATTCAGAAATTGCCGAGT 806
||||||||||||||||||||||| |||||| | | ||||| ||||| ||| || ||||
Sbjct 706 GATACATTTCTGAAAAAGAAAAGCTCATATGGCATGAAGAGAATTCACAAACCGCTGAGT 765
Query 807 CCTGGCCTCTGTGAAGATAGAGAGGAATCAACACCTGACCAAACGATTACACTAAATG-- 864
|||| |||| ||||||| ||||||||||||| | |||| ||||||||||| |||||||
Sbjct 766 CCTGCCCTCCGTGAAGAAAGAGAGGAATCAAAAGCTGATCAAACGATTACGCTAAATGCC 825
Query 865 T-TGT-A--AAGAAGGAAGGAAACATTCTGTTTGTTGAATGTGGTGATGACTTTGTTGAT 920
| ||| | ||||||||||| ||||||||||||||||||||||| || || |||||||||
Sbjct 826 TATGTTAGGAAGAAGGAAGGGAACATTCTGTTTGTTGAATGTGGCGAAGATTTTGTTGAT 885
Query 921 CTTCTCTTCACTTTTCTTGCTATACCTCTAGAATCTGCATGGGGAATAGCTGGCGATGGA 980
|||||||| |||||||||||||| ||||||||||||| |||||||||||||||| |||||
Sbjct 886 CTTCTCTTTACTTTTCTTGCTATGCCTCTAGAATCTGTATGGGGAATAGCTGGCAATGGA 945
Query 981 ATCATCATTGGATGCATTGGAAACTTGAGCAAAAGCTTTAAGGACTTAAGTGTTGATCCC 1040
|||||| |||||||||||||||||||| ||| |||||||||||| |||||| ||| | |
Sbjct 946 ATCATCTTTGGATGCATTGGAAACTTGTGCAGAAGCTTTAAGGATTTAAGTATTGTTTCT 1005
Query 1041 GG-ACGAGAAGCTAAATGTGTTCTTCCTCATTACTACAAGTGTCAGAAGCAGCTACTTGA 1099
| | |||||||||||||||| |||||||| |||||||||||||| |||||||| |||||
Sbjct 1006 AGTA-GAGAAGCTAAATGTGTACTTCCTCACTACTACAAGTGTCATAAGCAGCTTCTTGA 1064
Query 1100 TGCTGTCACCACCC-ATAAGCCACCGACTTTCTACTTGT-ATGTGTCCTCCATGGCTTCG 1157
|| |||||| |||| || ||||||| |||| |||| || |||| |||| | | | | |
Sbjct 1065 TGTTGTCAC-ACCCCATGAGCCACCAACTTACTACA-GTTATGTTTCCTTC-TC-CGTGG 1120
Query 1158 AATCATATTAGAGAGTACCGTTTGTCAGAAGACTCC-AGTAAGCCACTTGTTTATTTTTG 1216
| |||| ||||||||||| |||||| ||| |||| | |||||||||||||||| ||
Sbjct 1121 A-TCATTTTAGAGAGTACAATTTGTCTGAAAACTCTGA-TAAGCCACTTGTTTATGAGTG 1178
Query 1217 GGATGAACTCATGCCCATGATTTCGATAGATCCAAAATCTAAAGGT-AGTACTAACACTA 1275
|||| |||| ||||| ||||||||||||||||||||||| ||||| | | ||||||||
Sbjct 1179 GGATAAACTTGTGCCCGTGATTTCGATAGATCCAAAATCTGAAGGTGA-TGGTAACACTA 1237
Query 1276 CTGATGAGTCAACAATACCCAGTGGTGGCTTTATGAAGAGAGGGACAAAGTTTATGATAA 1335
|||||||||||||| | | |||||||| ||||||||||||||||||||||||||| | |
Sbjct 1238 GTGATGAGTCAACAACATCTAGTGGTGGATTTATGAAGAGAGGGACAAAGTTTATGGTGA 1297
Query 1336 CAGATGATTTGATCATCACACCTTTGAATTCAACCTCAACCATTGGATTGGTAAAAGAAA 1395
|||||||||||||||| ||||||| ||||||||||||||||||||| || |||| ||||
Sbjct 1298 CAGATGATTTGATCATTACACCTTCAAATTCAACCTCAACCATTGGACTGCTAAAGGAAA 1357
Query 1396 AACAGATCCGATTAGATGATGTCGAGGTTCAAGAGATCATCATTAGAAAAGAAGAGGCCA 1455
||||| |||| ||||| ||||| ||| |||||| ||||| |||||| |||||||||||||
Sbjct 1358 AACAGGTCCGGTTAGACGATGTTGAGATTCAAGTGATCACCATTAGGAAAGAAGAGGCCA 1417
Query 1456 TTAGGTTATTACAAGCTTCATTGGTGACATGTTCTGCCTTAAGCACTGGTCTTCTAGCTA 1515
||||||||||| |||||||||||||||||| |||||||||||||||| ||||||||||||
Sbjct 1418 TTAGGTTATTAGAAGCTTCATTGGTGACATTTTCTGCCTTAAGCACTAGTCTTCTAGCTA 1477
Query 1516 TAGAA-TCAGCTTCAACAAGTGTTCCTCAAAGCGCAAATTTG-AAGAAGCCAAAGATTGA 1573
| ||| | |||||||||||||||||||||||| | | ||| |||||||||||||||||
Sbjct 1478 TGGAAATT-GCTTCAACAAGTGTTCCTCAAAGC-CGACTTTTTAAGAAGCCAAAGATTGA 1535
Query 1574 GACTTGA 1580
|||||||
Sbjct 1536 GACTTGA 1542
> Ahg892101 jgi|Araly1|892101|Al_scaffold_0006_97
Length=1551
Score = 1247 bits (675), Expect = 0.0
Identities = 1293/1581 (82%), Gaps = 83/1581 (5%)
Strand=Plus/Plus
Query 42 ATGTCAGCT-ACTTTGAAGAATCCGGTGATTAAGTTGAAACTACTCATAGATGAAGAGAA 100
||||||| | | |||| ||||| |||||||||| ||||| ||||||||||||||||||||
Sbjct 1 ATGTCAGATGA-TTTGGAGAATTCGGTGATTAACTTGAAGCTACTCATAGATGAAGAGAA 59
Query 101 AAACAAAGTTGTATTTGTTGAGGCGGGTAAAGATTTTGTCGATTTACTCTTTAGtttttt 160
||||||||||||||| | |||||| ||| ||||||| |||||| |||||||||| ||||
Sbjct 60 AAACAAAGTTGTATTCGCTGAGGCTGGTCAAGATTTCGTCGATATACTCTTTAGCTTTTC 119
Query 161 tACTTTGCCAATGGGAACGATTGTTAGATTGCTGGAGATGTATAAGAAGTCACAGAAAAT 220
||||||||||||||||| ||||||||||||||||||||| || | |||||| || |||
Sbjct 120 GACTTTGCCAATGGGAACAATTGTTAGATTGCTGGAGATGCATCACAAGTCAAAGGCAAT 179
Query 221 AGCAATAGGCTGTTTCAGCAATATATATGCAAGTGTTGTGAGTATGGGCATTGA-GCATT 279
||| |||| ||||||| || || |||| |||||||| |||||||| || || |||||
Sbjct 180 AGCCGTAGGTTGTTTCAATAACATCTATGGGAGTGTTGTTAGTATGGGAAT-GAAGCATT 238
Query 280 TCT-TGACTGAAGCTTGTAAGCAAATGCTTTTGTATCCGGGCAGTTTGAATCATGAGAAA 338
|| | ||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 239 TCAGT-ACTGAAGCTTGCAAGCAAATGCTTTTGTATCCGGGGAGTTTGAATCAGGAGAAA 297
Query 339 TGTCGAAACCTTAAGCTGAGGGTAGATGATTCCGAGGCTACCAAGTATTTCGTGTGTCCT 398
|||| ||| ||||||||| | | ||||||||||||||||| || | |||| |||| |||
Sbjct 298 TGTCAAAAGATTAAGCTGAAGATTGATGATTCCGAGGCTACTAAATGTTTCATGTGCCCT 357
Query 399 AAGTTTGTG-GAA-CGTGAGCAATGTACTGAAAGT-TACAGCAATTTTAATACCTCGAGA 455
| ||||||| ||| || || ||||||| | |||| || ||||||||||||||||||||
Sbjct 358 ATGTTTGTGCGAAGCG-GA-CAATGTAGT-AAAGGGTATAGCAATTTTAATACCTCGAGG 414
Query 456 TGTAGCTGTGGTGT-TTTGATGAATGAAGTGACTCAGCTTGATGGAAGA-GGAGGCCTAG 513
||||||||||| | ||||||| ||| ||||| |||| || | ||| || ||||||| ||
Sbjct 415 TGTAGCTGTGG-GAATTTGATGGATGCAGTGATTCAGTTTCAAGGA-GAAGGAGGCCGAG 472
Query 514 CCAGTGCAGGAAATGGTGTTGAAGGTGGAGTATTTGTTAGGAGTGATCATACTTCATTCA 573
|| | ||||| ||||||||||||||||||||||| |||| || ||||||||||||||
Sbjct 473 GAAGCGTGGGAAAAGGTGTTGAAGGTGGAGTATTTGTGAGGAATGGTCATACTTCATTCA 532
Query 574 TGATCACTGATGATTTGAAAGTGGAAATTACCTCTGTTAGGTTGACACTTAATGTTCTTA 633
| ||||||||||||||||||||| || ||| ||| ||| ||| |||||||| |||||||
Sbjct 533 TAATCACTGATGATTTGAAAGTGCAAGTTAACTCAGTTGGGTCAACACTTAAGGTTCTTA 592
Query 634 AAGATCTTGGCTACGTAGATTGTGAA-AAGTTGGATGAGAA-GATTCAT-GACGTTAATC 690
||||||||||||| | |||||| || ||||||| ||| || ||||| | || |||||||
Sbjct 593 AAGATCTTGGCTATGCAGATTGC-AATAAGTTGGTTGA-AATGATTC-TCGAGGTTAATC 649
Query 691 TCGAAGAGGTACCGACTTTGCTGGAGTGTTTGT-CTACATCGGATAATCCATTGACCGAT 749
|| |||||||| |||||||||||| |||||| | | |||||||||| |||||||| ||||
Sbjct 650 TCCAAGAGGTAGCGACTTTGCTGGTGTGTTTATTC-ACATCGGATACTCCATTGAGCGAT 708
Query 750 ACATTTCTGAAAAAGAAAAGTTCATATAGTACAAAGAGGATTCAGAAATTGCCGAGTCCT 809
|||||||||||||||||||| |||| | ||| |||| |||||| |||| ||||||||||
Sbjct 709 ACATTTCTGAAAAAGAAAAGCTCATGTGGTATGAAGAAGATTCATAAATGGCCGAGTCCT 768
Query 810 GGC-CTCTGTGAAGATAGAGAGGAATCAACACCTGACCAAACGATTACACTAAATG--T- 865
| ||| |||| |||||||||||| ||| | |||| |||||||| || || |||| |
Sbjct 769 T-CTCTCAGTGAGGATAGAGAGGAAACAAAAGCTGATCAAACGATAACGCTGAATGCATA 827
Query 866 TGTAAAGAAGGAAGGAA---A-CATTCTGTTTGTTGAATGTGGTGATGACTTTGTTGATC 921
||| | |||||||| || | |||||| | ||||||||||||||| |||||||||||||
Sbjct 828 TGTTAGGAAGGAAG-AAGGGAGCATTCTATATGTTGAATGTGGTGAAGACTTTGTTGATC 886
Query 922 TTCTCTTCACTTTTCTTGCTATACCTCTAGAATCTGCATGGGGAATAGCTGGC-GATGGA 980
|||| ||| ||||||||||||| ||||| ||||||| ||||| ||| | ||| || |||
Sbjct 887 TTCTTTTCTCTTTTCTTGCTATGCCTCTGGAATCTGTATGGGAAATCTCGGGCAGA-GGA 945
Query 981 ATCATCATTGGATGCATTGGAAACTTGAGCAAAAGCTTTAAGGACTTAAGTGTTGATCCC 1040
|||||| |||||||||||||||||||| |||||||||| ||||| || ||||||||| ||
Sbjct 946 ATCATCCTTGGATGCATTGGAAACTTGTGCAAAAGCTTCAAGGATTTGAGTGTTGATTCC 1005
Query 1041 GGACGAGAAGCT--A------AA-TGTGTTCTTCCTCATTACTACAAGTGTCAGAAGCAG 1091
||| |||||||| | || ||||||||||||||||||||||||||||||||||||
Sbjct 1006 GGAAGAGAAGCTTCAGCTTTTAAATGTGTTCTTCCTCATTACTACAAGTGTCAGAAGCAG 1065
Query 1092 CTACT---TGATGCTGTCACCACCCATAAGCCACCGACTT-TCTACTTGTATGTG-TCCT 1146
|| || ||| | |||||| ||||| ||||||| |||| | ||| || | | ||||
Sbjct 1066 CTGCTAAATGAGGTTGTCACTACCCAGCAGCCACCAACTTAT-TACC-GTTTTTTATCCT 1123
Query 1147 CCATGGCT-TCGAATCATATTAGAGAGTACCGTTTGTCAGAAGACTCCAGTAAGCCACTT 1205
| | || | || |||| ||||||||||| ||||||| ||| |||| |||||| ||||
Sbjct 1124 TC-T--CTGTGGA-TCATTTTAGAGAGTACTGTTTGTCTGAAAACTCTGGTAAGCGACTT 1179
Query 1206 GTTTATTTTTGGGATGAACTCATGCCCATGATTTCGATAGATCCAAAATCTAAAG--GTA 1263
|| ||| |||||| ||||| |||| ||| ||||||||| |||||| ||| | |
Sbjct 1180 GTGTATGACTGGGATAAACTCGTGCCTGTGACTTCGATAGACCCAAAA---AAACCCGAA 1236
Query 1264 GTACTAAC-ACTACTGATGAGTCAACAATACCCAGTGGTGGCTTTATGAAGAGAGGGACA 1322
| | ||| || |||| ||| |||| |||| ||| ||||||||||||||
Sbjct 1237 GG-C-AACGAC-ACTGCTGAATCAA---------GTGGA---TTTGTGAAGAGAGGGACA 1281
Query 1323 AAGTTTATGATAACAGATGATTTGATCATCACACCTTTGAATTCAACCTCAACCATTGGA 1382
||||| ||| | ||||||||| |||||||||| |||| ||| ||||||||||||||||||
Sbjct 1282 AAGTTCATGGTGACAGATGATCTGATCATCACTCCTTCGAACTCAACCTCAACCATTGGA 1341
Query 1383 TTGGTAAAAGAAAAACAGATCCGATTAGATGATGTCGAGGTTCAAGAGATCA-TCATTAG 1441
|| |||| || ||||||| |||| ||||||| || || | | || ||||| | || |
Sbjct 1342 TTCTTAAAGGAGAAACAGACCCGACTAGATGAAGTGGAAATACGAGTGATCAAT-ATGAC 1400
Query 1442 AAAAGAAGAGGCCATTAGGTTATTACAAGCTTCATTGGTGACATGTTCTGCCTTAAGCAC 1501
||||||||||||||| | ||||| ||||||| ||||||||| ||||||||||||||
Sbjct 1401 AAAAGAAGAGGCCATCATATTATTGGGAGCTTCAATGGTGACATCCTCTGCCTTAAGCAC 1460
Query 1502 TGGTCTTCTAGCTATAGAATCAGCTTCAACAAGTGTTCCTCAAAGC-GCAAATTTGAAGA 1560
|||||| |||||||||||||||||||||||||||| ||||||| || | ||| ||||
Sbjct 1461 TGGTCTGCTAGCTATAGAATCAGCTTCAACAAGTGATCCTCAATGCCGGTTCTTT-AAGA 1519
Query 1561 AGCCAAAGATTGAGACTTGAG 1581
|||| ||||||||| || |||
Sbjct 1520 AGCCGAAGATTGAGTCT-GAG 1539
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62658453025
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5