BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G43250.1

Length=393
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg948856 jgi|Araly1|948856|scaffold_800743.1                        573    3e-163


> Ahg948856 jgi|Araly1|948856|scaffold_800743.1
Length=438

 Score =  573 bits (310),  Expect = 3e-163
 Identities = 370/398 (93%), Gaps = 7/398 (2%)
 Strand=Plus/Plus

Query  1    ATGGAGGAAGAAGAAGGATCAATC-CGACCAGAGTTTCCAATCGGAAGAGTAAAGAAGAT  59
            |||| ||||||||||  ||||| | ||||||||||||||  |||||||||||||||||||
Sbjct  21   ATGGCGGAAGAAGAAACATCAA-CTCGACCAGAGTTTCCTCTCGGAAGAGTAAAGAAGAT  79

Query  60   AATGAAACTGGACAAAGACATCAACAAAATCAACTCAGAAGCTCTTCACGTCATCACTTA  119
            ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  80   AATGAAACTCGACAAAGACATCAACAAAATCAACTCAGAAGCTCTTCACGTCATCACTTA  139

Query  120  CTCCACCGAACTCTTCCTCCACTTCCTCGCCGAGAAATCTGCTGTTGTTACGGCGGAGAA  179
            ||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct  140  CTCCACCGAACTCTTCCTCCACTTCCTCGCCGAGAAATCAGCTATTGTTACGGCGGAGAA  199

Query  180  GAAGCGTAAGACTGTTAATCTCGATCATTTAAGAATCGCCGTGAAAAGACACCAACCTAC  239
            ||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct  200  GAAGCGTAAAACTGTTAATCTCGATCATTTAAGAACCGCCGTGAAAAGACACCAACCCAC  259

Query  240  TAGTGATTTCCTCTTAGACTCGCTTCCGTTGCCGGCTCAGCCTGTCAAACATACCAAATC  299
             ||||||||||||||||||||||||||||| |||||||||||  ||||||||||||||||
Sbjct  260  GAGTGATTTCCTCTTAGACTCGCTTCCGTTACCGGCTCAGCCACTCAAACATACCAAATC  319

Query  300  GGTTTCCGACAAGAAGATTCCGGCGCCGCCAATTGGGACTCGTCGTATCGATGATTTCTT  359
             |||||||||||||||  |||  |||||||||||||||||||||||||||||||||||||
Sbjct  320  AGTTTCCGACAAGAAGGCTCCTCCGCCGCCAATTGGGACTCGTCGTATCGATGATTTCTT  379

Query  360  CAGTAAAGGGAAAGCA-AAGACTGAT--T-CAGCCTAA  393
             ||||||||||||| | |||||||||  | ||||||||
Sbjct  380  TAGTAAAGGGAAAG-AGAAGACTGATGATTCAGCCTAA  416



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14079412341


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5