BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G43270.2
Length=1621
Score E
Sequences producing significant alignments: (Bits) Value
Ahg948853 jgi|Araly1|948853|scaffold_800740.1 1810 0.0
> Ahg948853 jgi|Araly1|948853|scaffold_800740.1
Length=1327
Score = 1810 bits (980), Expect = 0.0
Identities = 1225/1334 (92%), Gaps = 54/1334 (4%)
Strand=Plus/Plus
Query 122 TTTGGTGGTCA--GTGTCTGATGGAGTGTAATGCA-AAGCCACCGTTTCAATGGGAATTG 178
||||||||||| ||||| |||||||||||||| | |||||| |||||||||||||||||
Sbjct 1 TTTGGTGGTCAGTGTGTCGGATGGAGTGTAATG-AGAAGCCATCGTTTCAATGGGAATTG 59
Query 179 GAAAACTTGATATCTTTTGGCACTTCTA-CAGCTGAAGTTCCTAGAAAGCTAAAACCAAT 237
||||| |||||||||||||| ||||| | |||||||| ||||||||||||||||||||||
Sbjct 60 GAAAATTTGATATCTTTTGGTACTTC-ATCAGCTGAAATTCCTAGAAAGCTAAAACCAAT 118
Query 238 GGAGTGGGAAATTGATGGATTTGATTGCACCTCTCTGTATTCTTCAAGC-TT--TGC--- 291
|||||||||||||||||| |||||||||||||||||||||||||||||| || |||
Sbjct 119 GGAGTGGGAAATTGATGGGTTTGATTGCACCTCTCTGTATTCTTCAAGCTTTGCTGCAGT 178
Query 292 --C-TATGCTGGTAGTTCAGGTTCTGATATAGCTCATGCTTTCTCTAAAAGCTCAAAGTC 348
| |||| ||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 179 AGCTTATGGTGGTAGTTCAGGTTCTGATCTAGCTAATGCTTTCTCTAAAAGCTCAAAGTC 238
Query 349 AACTTCCATTAGCTCTTCATCAGCTGAAGTAAGAACACACAATTTTACATCCGAAACTGG 408
|| | ||| ||||||||||||||||| |||||||| ||||||||||| ||| ||||
Sbjct 239 AA----C--TAGTTCTTCATCAGCTGAAGTGAGAACACATAATTTTACATCAGAAGCTGG 292
Query 409 TGAAAGTCTTCC--------T--G--G-A--G-A-A-TTTGCAAAGGGGATTGATACTTC 450
|||||||||||| | | | | | | | ||||||||||| |||||||||||
Sbjct 293 TGAAAGTCTTCCTGGAGAATTAGGCAGCAGTGAAGAGTTTGCAAAGGGAATTGATACTTC 352
Query 451 TCCAAGTCTTGAACTTTCTTTTGGCTCTGGTGATCCGGTTCTCGGTTTAAAGCTTGGTAA 510
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 353 TCCAAGTCTTGAACTTTCTTTTGGCTCTGGTGATCCAGTTCTCGGTTTAAAGCTTGGTAA 412
Query 511 ACGAACGTACTTTGAAGACTTTTGGGAAGTGGAGAATGCTAAAGGTTTGGGACTTCCAGT 570
|||||| |||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 413 ACGAACTTACTTTGAAGACTTTTGGGAAGTGGAAAATGCGAAAGGTTTGGGACTTCCAGT 472
Query 571 GA-CTCTGGCTTCATCTTCTGTTTCTCCCGTGAAGAAATCGAAATCCATTCCTCAGAGGT 629
|| | || ||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 473 GAGC-CTTGCTTCGTCTTCTGTTTCTCCGGTGAAGAAATCGAAATCCATTCCTCAGAGGT 531
Query 630 TACAAACTCCTCACTGTCAAGTTGAAGGCTGTAATCTTGATCTTTCATCAGCTAAAGACT 689
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 532 TACAAACTCCTCACTGTCAAGTTGAAGGCTGTAATCTCGATCTCTCATCAGCTAAAGACT 591
Query 690 ATCATCGGAAACATAGGATTTGTGAAAATCATTCAAAGTTTCCTAAAGTCGTTGTGAGTG 749
||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 592 ATCATCGGAAACACAGGATTTGTGAAAACCATTCAAAGTTTCCTAAAGTCGTTGTGAGTG 651
Query 750 GCGTAGAGCGTCGGTTCTGCCAACAATGTAGCAGGTTCCACTGTCTCTCTGAGTTTGATG 809
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 652 GCGTAGAGCGTCGGTTCTGCCAACAATGTAGCAGGTTCCACTGTCTCTCTGAGTTTGATG 711
Query 810 AGAAGAAACGTAGCTGTCGCCGACGTCTCTCAGATCACAATGCAAGACGTCGCAAGCCAA 869
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 712 AGAAGAAACGTAGCTGTCGCCGACGTCTCTCAGATCACAATGCAAGACGTCGCAAGCCAA 771
Query 870 ATCCTGGAAGGACATATGATGGGAAACCACAGGTGGATTTTGTATGGAACAGATTTGCAC 929
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 772 ATCCTGGGAGGACATATGATGGGAAACCACAGGTGGATTTTGTATGGAACAGATTTGCAC 831
Query 930 TTATCCATCCAAGAAGTGAGGAAAAGTTTATATGGCCAAGTTCGAAGCACGTACCATCAA 989
||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||
Sbjct 832 TTATCCATCCAAGAAGTGAGGAAAAGTTTCTATGGCCAAGTTCGAAGCCCGTACCATCAA 891
Query 990 GAGTGTTAATGCCGCAACCTGCAAAGACTGAGATTTCCGATA--C----C---GAGCACA 1040
||| ||||||| |||||||||||||||| |||| |||| ||| | | |||||||
Sbjct 892 GAGGGTTAATGTCGCAACCTGCAAAGACCGAGACTTCCAATAAGCTGTTCACCGAGCACA 951
Query 1041 ATAGATTTGGATTGTTGGACCCCAAAACCAAAACCGCAAGAGCCGAGTTATTCAGTAAAG 1100
|||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct 952 GTAGATTTGGATTGTTGGACCCCAAAACCAAAACCGCAAGAACCGAGTTATTCAATAAAG 1011
Query 1101 AAAAGGTCACAATCTCTTCACACATGGGTGCTTCTCAAGATCTTGATGGTGCTCTCTCTC 1160
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1012 AAAAGGTCACAATCTCTTCACACATGGGTACTTCTCAAGATCTTGATGGTGCTCTCTCTC 1071
Query 1161 TTCTGTCAAATTCAACAACATGGGTTTCTTCCTCTGACCAACCAAGGCGTTTTACCCTTG 1220
||||||||||||||||| |||||||||| | |||||||||||||| |||||||||||||
Sbjct 1072 TTCTGTCAAATTCAACATCATGGGTTTC--C-TCTGACCAACCAAGACGTTTTACCCTTG 1128
Query 1221 ATCACCATCCCTCAAGCAACCTCCAACCCGTAGCTCACCGGTCTGCGGCTCAACTCAATT 1280
||||||||||| |||||||||||||||| || ||| |||| |||||| ||||||||||||
Sbjct 1129 ATCACCATCCCACAAGCAACCTCCAACCTGTGGCTAACCGTTCTGCGACTCAACTCAATT 1188
Query 1281 CAGTTTCCGGCTATTGGCAGCCGGACCCACCCGCAGTTGAAGGCCCGACCGCTCTGCATA 1340
| || |||||||||||||||||||| ||||| ||||||| |||||||||||||||||||
Sbjct 1189 CGGTGTCCGGCTATTGGCAGCCGGAACCACCAACAGTTGAGGGCCCGACCGCTCTGCATA 1248
Query 1341 GAAATGGGGTAGGCCAGTTTAATGAAAACTACTTCAGCTTGAACCAGTTTTATAACTGAA 1400
|||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1249 GAAACGGGGTAGGCCAGTTTAATGAAAACTGCTTCAGCTTGAACCAGTTTTATAACTGAA 1308
Query 1401 AATTGTATGCCTTT 1414
| | ||||||||||
Sbjct 1309 AGT-GTATGCCTTT 1321
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60753940775
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5