BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G43280.1
Length=1097
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494675 jgi|Araly1|494675|fgenesh2_kg.8__491__AT5G43280.1 1476 0.0
> Ahg494675 jgi|Araly1|494675|fgenesh2_kg.8__491__AT5G43280.1
Length=1052
Score = 1476 bits (799), Expect = 0.0
Identities = 976/1059 (92%), Gaps = 22/1059 (2%)
Strand=Plus/Plus
Query 33 ATCATCATCATCACTGTATTTCAAACTATGACAATGGAGTCATACAAAACCCTAGAAATC 92
|||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2 ATCATCATCACCACTGTATTTCAAATTATGACAATGGAGTCATACAAAACCCTAGAAATC 61
Query 93 ATTCGCAAGAACACTGATTCCTCCGTATTTCATCTCATCATCAACAGACCATCACATCTC 152
||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 62 GTTCGCAAGAACTCTGATTCCTCCGTATTTCACCTCATCATCAACAGACCATCACATCTC 121
Query 153 AACGCCTTATCTCTCGATTTCTTCATCGAATTCCCCAAAGCTCTCTCATCTCTCGACCAA 212
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 122 AACGCCTTATCTCTCGATTTCTTCATCGAATTCCCCAAAGCTCTCTCATCTCTCGACCAA 181
Query 213 AATCC-AGATGTCTCCGTCATCATCCTCTCCGGCGCCGGAAAACACTTCTGCTCCGGTAT 271
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 182 AA-CCAAGATGTCTCCGTCATCATCCTCTCCGGCGCCGGAAAACACTTCTGCTCCGGCAT 240
Query 272 CGATCTCAATTCCCTCTCTTCAATCTCGACACAATCCTCCTCCGGTAACGACAGAGGACG 331
|||||||| |||||||||||||||||| ||||||||||| ||||||||||| ||||||||
Sbjct 241 CGATCTCACTTCCCTCTCTTCAATCTCAACACAATCCTCGTCCGGTAACGATAGAGGACG 300
Query 332 ATCTAGCGAGCAGCTACGCCGTAAGATCAAGTCGATGCAAGCGGCGATTACAGCGATTGA 391
|| ||||||||||| |||||||||||||||||||||||||| |||||||| || || ||
Sbjct 301 CTCAAGCGAGCAGCTCCGCCGTAAGATCAAGTCGATGCAAGCTGCGATTACGGCAATCGA 360
Query 392 ACAATGCCGGAAACCTGTAATCGCCGCTATTCACGGCGCGTGTATCGGTGGCGGTGTTGA 451
||| ||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 361 ACAGTGCCGGAAACCTGTAATCGCCGCTATTCACGGCGCGTGTATCGGTGGAGGCGTTGA 420
Query 452 TC-TGATTACCGCTTGTGATATTAGGTATTGCTCTGAGGATGCGTTTTTCTCGATTAAAG 510
|| || | |||||||||||| |||||||||||||||||||||| ||||||||||| ||||
Sbjct 421 TCTTG-TCACCGCTTGTGATGTTAGGTATTGCTCTGAGGATGCTTTTTTCTCGATCAAAG 479
Query 511 AGGTTGATCTAGCGATTGTTGCGGATCTTGGTACACTTCAGCGATTACCGAGTATCGTTG 570
|||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct 480 AGGTTGATCTAGCGATTGTTGCGGATCTTGGTACGCTTCAGAGATTACCGAGTATCGTTG 539
Query 571 GGTATGCTAACGCCATGGAATTGGCTTTAACTGCTCGGAGATTCTCTGGAAGTGAAGC-A 629
||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct 540 GGTATGCAAACGCCATGGAATTGGCTTTAACTGCTCGGAGATTCTCTGGTGGTGAAGCTA 599
Query 630 AAGGATCTTGGT-TTGGTTTCTAAAGTTTTCGGATCTAAATCGGAGCTTGATAATGGCGT 688
|| || |||||| || |||||| |||||||||||||||||||| |||||||| |||||
Sbjct 600 AA-GAACTTGGTCTT-GTTTCTCGGGTTTTCGGATCTAAATCGGATCTTGATAACGGCGT 657
Query 689 CACTACAATCGCCGAAGGAATAGGAGGCAAGTCTCCTTTAGCTGTGACAGGGACAAAGGC 748
|| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 CATTACGATCGCCGAAGGAATAGGAGGCAAGTCTCCTTTAGCTGTGACAGGGACAAAGGC 717
Query 749 AGTGTTATTAAGAAGCAGAGAGGTGAGTGTAGAACAAGGACTTGACTATGTAGCAACTTG 808
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 718 AGTGTTATTAAGAAGCAGAGAGGTGAGTGTAGAACAAGGTCTTGACTATGTAGCGACTTG 777
Query 809 GAACTCGGCTATGCTTATATCAGATGATCTCAACGAAGCTGTTTCTGCTCAGATGATGAA 868
|||||||||||||||||| ||| | |||||||| |||||||| ||||||||| || ||||
Sbjct 778 GAACTCGGCTATGCTTATTTCAAACGATCTCAATGAAGCTGTCTCTGCTCAGTTGGTGAA 837
Query 869 AAGAAAACCTCGGTTTGCTAAACTTTGATACAGTCTCTCTGTTGCTTCTT-TA-T-CTTT 925
|||||||||||||||||||||||| |||||| |||||| |||||||||| | | | ||
Sbjct 838 AAGAAAACCTCGGTTTGCTAAACTGTGATACTGTCTCT--GTTGCTTCTTGTTGTTCATT 895
Query 926 --C-A-A--A-GCTCTTCTGGTAACTAAAGTAATAAGATATTACTTCAAATAAGTTTAGT 978
| | | | |||||| ||||||| ||||||||||||||||||||||| ||||||||
Sbjct 896 GACGATATTAAGCTCTTTTGGTAAC-AAAGTAATAAGATATTACTTCAAG-AAGTTTAGC 953
Query 979 TATTGATAGTTCCCTAATTACGGATTAGGGCTATAGATAAAATGGTCTTCTACACATGAG 1038
||||||||||| |||||||| ||||||||||||||||||||||||| |||| ||||||||
Sbjct 954 TATTGATAGTTTCCTAATTATGGATTAGGGCTATAGATAAAATGGTTTTCTTCACATGAG 1013
Query 1039 AATATGATTAATACTCTGCACAATGCATATTGGTAAATG 1077
|||||||||||||||||||| | ||| | ||||||||||
Sbjct 1014 AATATGATTAATACTCTGCATAGTGCGTGTTGGTAAATG 1052
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40867767024
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5