BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G43285.1
Length=285
Score E
Sequences producing significant alignments: (Bits) Value
Ahg915922 jgi|Araly1|915922|Al_scaffold_0008_673 246 5e-65
Ahg887975 jgi|Araly1|887975|Al_scaffold_1021_1 244 2e-64
Ahg331067 jgi|Araly1|331067|fgenesh1_pm.C_scaffold_8000410 244 2e-64
Ahg333429 jgi|Araly1|333429|fgenesh1_pm.C_scaffold_1021000001 239 9e-63
> Ahg915922 jgi|Araly1|915922|Al_scaffold_0008_673
Length=276
Score = 246 bits (133), Expect = 5e-65
Identities = 222/263 (84%), Gaps = 13/263 (5%)
Strand=Plus/Plus
Query 1 ATGAAGTTGA-TTTTTATATTTTTAACTCTATTAATTTTTGTTTCTTCATGTACATCAAT 59
|||||||||| ||||| ||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 1 ATGAAGTTGACTTTTT-TATTTTTCACTCTTTTAATTTTTGTTTCTTCATGTACATCAAT 59
Query 60 ACTTATAAAGGAATCTAGTGAAGAAGAGAGAA-TATATCCTTTCAATCCAGTAGCAAGTC 118
|||||||||||||||||||| |||||||| || | ||| ||||||||||| ||||||||
Sbjct 60 ACTTATAAAGGAATCTAGTGGAGAAGAGACAACT-TATTATTTCAATCCAGCAGCAAGTC 118
Query 119 CTTTCGATCCACGTTCACTGAACCAA-A--TACTTAAA-ATAGGCAAA-ATTGGTTATTG 173
||||||||||| | | |||||||| | | ||| || | ||| | |||||||||||
Sbjct 119 CTTTCGATCCATATGCTTTGAACCAAGAACTTCTTCAACA-AGG-ATGGATTGGTTATTG 176
Query 174 TTTTGATTGCGCAAGAGCTTGTATGAGAAG-AGATAGGTATATTCGCACATGTAGTTTTG 232
|||||||||||||||||||||||||||||| | | | ||||| | ||||||||| |
Sbjct 177 TTTTGATTGCGCAAGAGCTTGTATGAGAAGGAAAAAA-TATATAAAAAGATGTAGTTTGG 235
Query 233 AAAGAAAACTTTGTCGTTGCAGT 255
|||| | |||||||||||||||
Sbjct 236 AAAGGCATCTTTGTCGTTGCAGT 258
> Ahg887975 jgi|Araly1|887975|Al_scaffold_1021_1
Length=273
Score = 244 bits (132), Expect = 2e-64
Identities = 232/278 (83%), Gaps = 16/278 (6%)
Strand=Plus/Plus
Query 1 ATGAAGTTGATTTTTATATTTTTAACTCTATTAATTTTTGTTTCTTCATGTACATCAATA 60
|||||||||| |||| ||||||| ||||| ||||||||||||||||||||| ||||||||
Sbjct 1 ATGAAGTTGACTTTTCTATTTTTCACTCTTTTAATTTTTGTTTCTTCATGTGCATCAATA 60
Query 61 CTTATAAAGGAATCTAGTGAAGAAGAGAGA-ATATATCCTTTCAATCCA-GTAGCAAGTC 118
||||||||||||||||||| |||||||| | | ||| ||||||| || | ||||||||
Sbjct 61 CTTATAAAGGAATCTAGTGGAGAAGAGACAGCT-TATTATTTCAAT-CAGGCAGCAAGTC 118
Query 119 CTTTCGATCCACGTTCACTGAACCA-AATACTT-AA-AATAGGCAAAATTGGTTATTGTT 175
||||||||||| |||| ||||||| || |||| || |||| |||||||||||||
Sbjct 119 CTTTCGATCCATATTCATTGAACCAGAA-ACTTAAACAATA--TTGGATTGGTTATTGTT 175
Query 176 TTGATTGCGCAAGAGCTTGTATGAGAA-GAGATAGGTATATTC-GCACATGTAGTTTTGA 233
||||||||||||||||||||||||||| | || | |||||| | | ||||| ||| ||
Sbjct 176 TTGATTGCGCAAGAGCTTGTATGAGAAAGGGAAAA-TATATTAAG-AGATGTAATTTGGA 233
Query 234 AAGAAAACTTTGTCGTTGCAGTTAT-AGTCATATTCAT 270
|||| ||||||||||||||| || ||| | ||||||
Sbjct 234 AAGACGTCTTTGTCGTTGCAGT-ATTAGTAAGATTCAT 270
> Ahg331067 jgi|Araly1|331067|fgenesh1_pm.C_scaffold_8000410
Length=273
Score = 244 bits (132), Expect = 2e-64
Identities = 232/278 (83%), Gaps = 16/278 (6%)
Strand=Plus/Plus
Query 1 ATGAAGTTGA-TTTTTATATTTTTAACTCTATTAATTTTTGTTTCTTCATGTACATCAAT 59
|||||||||| ||||| |||||| ||||| ||||||||||||||||||||| |||||||
Sbjct 1 ATGAAGTTGACTTTTT-TATTTTCCACTCTTTTAATTTTTGTTTCTTCATGTGCATCAAT 59
Query 60 ACTTATAAAGGAATCTAGTGAAGAAGAGAGA-ATATATCCTTTCAATCCAGTAGCAAGTC 118
|||||||||||||||||||| |||||||| | | ||| ||||||||| | ||||||||
Sbjct 60 ACTTATAAAGGAATCTAGTGGAGAAGAGACAGCT-TATTATTTCAATCCGGCAGCAAGTC 118
Query 119 CTTTCGATCCACGTTCACTGAACCA-AATACTT-AA-AATAGGCAAAATTGGTTATTGTT 175
||||||||||| |||| ||||||| || |||| || |||| |||||||||||||
Sbjct 119 CTTTCGATCCATATTCATTGAACCAGAA-ACTTAAACAATA--TTGGATTGGTTATTGTT 175
Query 176 TTGATTGCGCAAGAGCTTGTATGAGAA-GAGATAGGTATATTC-GCACATGTAGTTTTGA 233
||||||||||||||||||||||||||| | || | |||||| | | ||||| ||| ||
Sbjct 176 TTGATTGCGCAAGAGCTTGTATGAGAAAGGGAAAA-TATATTAAG-AGATGTAATTTGGA 233
Query 234 AAGAAAACTTTGTCGTTGCAGTTAT-AGTCATATTCAT 270
|||| ||||||||||||||| || ||| | ||||||
Sbjct 234 AAGACGTCTTTGTCGTTGCAGT-ATTAGTAAGATTCAT 270
> Ahg333429 jgi|Araly1|333429|fgenesh1_pm.C_scaffold_1021000001
Length=273
Score = 239 bits (129), Expect = 9e-63
Identities = 230/277 (83%), Gaps = 14/277 (5%)
Strand=Plus/Plus
Query 1 ATGAAGTTGA-TTTTTATATTTTTAACTCTATTAATTTTTGTTTCTTCATGTACATCAAT 59
|||||||||| ||||| ||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 1 ATGAAGTTGACTTTTT-TATTTTTCACTCTTTTAATTTTTGTTTCTTCATGTACATCAAT 59
Query 60 ACTTATAAAGGAATCTAGTGAAGAAGAGAGAATATA-TCCTTTCAATCCAGTAGCAAGTC 118
|||||||||||||||||||| |||||||| | || | ||||||||| | || |||||
Sbjct 60 ACTTATAAAGGAATCTAGTGGAGAAGAGA-CAGCTAGTTATTTCAATCCGGCAGAAAGTC 118
Query 119 CTTTCGATCCACGTTCACTGAACCA-AATACTTAAA-ATAGGCAAAATTGGTTATTGTTT 176
||||||||||| |||| ||||||| | ||||||| | || ||||||||||||||
Sbjct 119 CTTTCGATCCATATTCATTGAACCATGA-ACTTAAACA-AGATTGGATTGGTTATTGTTT 176
Query 177 TGATTGCGCAAGAGCTTGTATGAGAAGAG-ATAGGTATATTC-GCACATGTAGTTTTGAA 234
||||||||||||||||||||||||| | | | | |||||| | | ||||| ||| |||
Sbjct 177 TGATTGCGCAAGAGCTTGTATGAGACGGGGA-ACATATATTATG-AGATGTAATTTGGAA 234
Query 235 AGAAAACTTTGTCGTTGCAGTTAT-AGTCATATTCAT 270
||| ||||||||||||||| || ||| | ||||||
Sbjct 235 AGACGTCTTTGTCGTTGCAGT-ATTAGTAAGATTCAT 270
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 9958608729
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5