BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G43290.1
Length=1092
Score E
Sequences producing significant alignments: (Bits) Value
Ahg497253 jgi|Araly1|497253|fgenesh2_kg.97__1__AT5G43290.1 1227 0.0
Ahg952633 jgi|Araly1|952633|scaffold_9700001.1 1223 0.0
Ahg948846 jgi|Araly1|948846|scaffold_800733.1 1223 0.0
Ahg915921 jgi|Araly1|915921|Al_scaffold_0008_672 1146 0.0
Ahg948847 jgi|Araly1|948847|scaffold_800734.1 737 0.0
> Ahg497253 jgi|Araly1|497253|fgenesh2_kg.97__1__AT5G43290.1
Length=920
Score = 1227 bits (664), Expect = 0.0
Identities = 813/886 (92%), Gaps = 6/886 (1%)
Strand=Plus/Plus
Query 57 ctccctctccccctctccccctcACCACCAGCTCGCATAAGTTTTCTTGTCCCCATACTC 116
||| ||||| ||||||||||||| ||||| ||||| ||||||||||||| |||||||||
Sbjct 41 CTCTCTCTCTCCCTCTCCCCCTCTCCACCTGCTCGTGTAAGTTTTCTTGTTCCCATACTC 100
Query 117 ATATGGAAGAAGAAGGTTATCAGTGGGCAAGAAGGTGTGGAAACAACGCCGTTGAAGATC 176
|||||| |||| |||||| ||||||| ||||||||||||||||| ||||||||||||||
Sbjct 101 ATATGGCAGAAAAAGGTTCTCAGTGGACAAGAAGGTGTGGAAACGACGCCGTTGAAGATA 160
Query 177 CTTTTGTTTATGAGCCACCTCTTTTCTTTCTGCCTCAAGACCAACATCATATGCATGGGC 236
||||||| ||||||| ||||| |||||||| ||||||| ||||||| || | |||
Sbjct 161 TTTTTGTTAATGAGCCTCCTCTATTCTTTCTTTCTCAAGAACAACATC--AT--A--GGC 214
Query 237 TCATGCCAAATGAAGATTTCATTGCCAACAAGTTCGTCACATCAACACTTTACTCCGGTC 296
|||||||| ||||||||| |||| |||||||||| |||||||||||||||||||||||||
Sbjct 215 TCATGCCATATGAAGATTCCATTACCAACAAGTTTGTCACATCAACACTTTACTCCGGTC 274
Query 297 CACGAATCCAAGATATTGCAAACGCTCTGGCCTTGGTCGAACCCCTGACCCACCCAGTCC 356
| |||||||||||||| ||||||||||||| |||||| ||||||||| ||||||||||||
Sbjct 275 CGCGAATCCAAGATATCGCAAACGCTCTGGTCTTGGTTGAACCCCTGTCCCACCCAGTCC 334
Query 357 GAGAAATCTCTAAATCAACAGTTCCTCTTTTGGAAAGAAGTACTTTGAGCAAGGTGGATA 416
| |||||||| |||||||| ||||| | ||||||||||||||||||| |||||||||||
Sbjct 335 GGGAAATCTCCAAATCAACGGTTCCACGGTTGGAAAGAAGTACTTTGAACAAGGTGGATA 394
Query 417 GGTACACTTTAAAGGTGAAGAACAATAGTAATGGAATGTGTGATGATGGATACAAATGGA 476
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 395 AGTACACTTTAAAGGTGAAGAATAATAGTAATGGAATGTGTGATGATGGATACAAATGGA 454
Query 477 GAAAATATGGCCAAAAATCAATCAAAAATAGCCCTAACCCAAGGAGTTATTACAAGTGCA 536
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 455 GAAAATATGGCCAAAAATCAATCAAAAATAGCCCTAACCCGAGGAGTTATTACAAGTGCA 514
Query 537 CAAACCCAATATGCAATGCAAAGAAGCAAGTGGAGAGATCAATTGATGAGTCTAACACAT 596
||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||
Sbjct 515 CAAACCCAATATGCAATGCTAAGAAGCAAGTGGAGAGATCAATTGATGAGCCTAACACAT 574
Query 597 ATATCATTACCTACGAAGGTTTCCACTTCCACTATACTTACCCTTTCTTCCTACCCGATA 656
||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 575 ATATCATCACCTACGAAGGTTTCCACTTTCACTATACTTACCCTTTCTTCCTACCCGATA 634
Query 657 AGACACGTCAATGGCCCAATaaaaaaaCGAAAATACATAAACATAATGCTCAAGATATGA 716
|||||| |||||||||||||||||||||||||||||||||| || |||||||||| ||||
Sbjct 635 AGACACATCAATGGCCCAATAAAAAAACGAAAATACATAAATATTATGCTCAAGAGATGA 694
Query 717 ACAAAAAATCTCAAACCCAAGAAGAGAGCAAAGAAGCACAATTAGGTGAGCTCACCAACC 776
||||| |||||||||||||||||| ||||||||||| ||||||||||||| | ||||||
Sbjct 695 ACAAAGGATCTCAAACCCAAGAAGAAAGCAAAGAAGCCCAATTAGGTGAGCCCGCCAACC 754
Query 777 AAAATCATCCAGTCAATAAAGCCCAAGAAAACACACCGGCAAATCTCGAAGAGGGATTGT 836
||||||| |||||| |||| ||||||||||||||||||| |||||||||||| |||||||
Sbjct 755 AAAATCAGCCAGTCCATAAGGCCCAAGAAAACACACCGGTAAATCTCGAAGATGGATTGT 814
Query 837 TTTTTCCGGTTGATCAGTGTCGGCCGCAACAAGGGCTTCTAGAAGATGTGGTAGCTCCGG 896
|||| ||||||||||||||||| | ||||||||||||| ||||||||||||| ||||| |
Sbjct 815 TTTTCCCGGTTGATCAGTGTCGACGGCAACAAGGGCTTTTAGAAGATGTGGTGGCTCCAG 874
Query 897 CAATGAAAAATATTCCTACCAGGGACAGTGTTTTGACAGCTTCTTG 942
|||||||||||||||| |||| |||||||||||||||||| |||||
Sbjct 875 CAATGAAAAATATTCCGACCAAGGACAGTGTTTTGACAGCCTCTTG 920
> Ahg952633 jgi|Araly1|952633|scaffold_9700001.1
Length=980
Score = 1223 bits (662), Expect = 0.0
Identities = 785/845 (93%), Gaps = 6/845 (1%)
Strand=Plus/Plus
Query 98 TTTTCTTGTCCCCATACTCATATGGAAGAAGAAGGTTATCAGTGGGCAAGAAGGTGTGGA 157
||||||||| ||||||||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct 1 TTTTCTTGTTCCCATACTCATATGGCAGAAGAAGGTTATCAGTGGACAAGAAGGTGTGGA 60
Query 158 AACAACGCCGTTGAAGATCCTTTTGTTTATGAGCCACCTCTTTTCTTTCTGCCTCAAGAC 217
||| |||||||||||||| ||||||| ||||||||||||| |||||||| ||||||||
Sbjct 61 AACGACGCCGTTGAAGATATTTTTGTTAATGAGCCACCTCTATTCTTTCTTCCTCAAGAA 120
Query 218 CAACATCATATGCATGGGCTCATGCCAAATGAAGATTTCATTGCCAACAAGTTCGTCACA 277
||||||| || | ||||||||||||||||||||| |||| |||||||||||||||||
Sbjct 121 CAACATC--AT--A--GGCTCATGCCAAATGAAGATTCCATTACCAACAAGTTCGTCACA 174
Query 278 TCAACACTTTACTCCGGTCCACGAATCCAAGATATTGCAAACGCTCTGGCCTTGGTCGAA 337
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 175 TCAACACTTTACTCCGGTCCACGAATCCAAGATATCGCAAACGCTCTGGCCTTGGTTGAA 234
Query 338 CCCCTGACCCACCCAGTCCGAGAAATCTCTAAATCAACAGTTCCTCTTTTGGAAAGAAGT 397
|||||| |||||||||||| ||||||||| |||||||| ||||| | ||||||||||||
Sbjct 235 CCCCTGTCCCACCCAGTCCCAGAAATCTCCAAATCAACGGTTCCACGGTTGGAAAGAAGT 294
Query 398 ACTTTGAGCAAGGTGGATAGGTACACTTTAAAGGTGAAGAACAATAGTAATGGAATGTGT 457
||||||| ||||||||||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct 295 ACTTTGAACAAGGTGGATAAGTACACTTTAAAGGTGAAGAATAATAGTAATGGAATGTGT 354
Query 458 GATGATGGATACAAATGGAGAAAATATGGCCAAAAATCAATCAAAAATAGCCCTAACCCA 517
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 355 GATGATGGATACAAATGGAGAAAATATGGCCAAAAATCAATCAAAAATAGCCCTAACCCG 414
Query 518 AGGAGTTATTACAAGTGCACAAACCCAATATGCAATGCAAAGAAGCAAGTGGAGAGATCA 577
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 415 AGGAGTTATTACAAGTGCACAAACCCAATATGCAATGCTAAGAAGCAAGTGGAGAGATCA 474
Query 578 ATTGATGAGTCTAACACATATATCATTACCTACGAAGGTTTCCACTTCCACTATACTTAC 637
||||||||| |||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 475 ATTGATGAGCCTAACACATATATCATCACCTACGAAGGTTTCCACTTTCACTATACTTAC 534
Query 638 CCTTTCTTCCTACCCGATAAGACACGTCAATGGCCCAATaaaaaaaCGAAAATACATAAA 697
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 535 CCTTTCTTCCTACCCGATAAGACACATCAATGGCCCAATAAAAAAACGAAAATACATAAA 594
Query 698 CATAATGCTCAAGATATGAACAAAAAATCTCAAACCCAAGAAGAGAGCAAAGAAGCACAA 757
|| |||||||||| ||||||||| |||||||||||||||||| ||||||||||| |||
Sbjct 595 TATTATGCTCAAGAGATGAACAAAGGATCTCAAACCCAAGAAGAAAGCAAAGAAGCCCAA 654
Query 758 TTAGGTGAGCTCACCAACCAAAATCATCCAGTCAATAAAGCCCAAGAAAACACACCGGCA 817
|||||||||| | ||||||||||||| |||||| |||| ||||||||||||||||||| |
Sbjct 655 TTAGGTGAGCCCGCCAACCAAAATCAGCCAGTCCATAAGGCCCAAGAAAACACACCGGTA 714
Query 818 AATCTCGAAGAGGGATTGTTTTTTCCGGTTGATCAGTGTCGGCCGCAACAAGGGCTTCTA 877
||||||||||| | ||||||||| ||||||||||||||||| | ||||||||||||| ||
Sbjct 715 AATCTCGAAGATGAATTGTTTTTCCCGGTTGATCAGTGTCGACGGCAACAAGGGCTTTTA 774
Query 878 GAAGATGTGGTAGCTCCGGCAATGAAAAATATTCCTACCAGGGACAGTGTTTTGACAGCT 937
||||||||||| ||||| ||||||||||||||||| |||| ||||||||||||||||||
Sbjct 775 GAAGATGTGGTGGCTCCAGCAATGAAAAATATTCCGACCAAGGACAGTGTTTTGACAGCC 834
Query 938 TCTTG 942
|||||
Sbjct 835 TCTTG 839
> Ahg948846 jgi|Araly1|948846|scaffold_800733.1
Length=980
Score = 1223 bits (662), Expect = 0.0
Identities = 785/845 (93%), Gaps = 6/845 (1%)
Strand=Plus/Plus
Query 98 TTTTCTTGTCCCCATACTCATATGGAAGAAGAAGGTTATCAGTGGGCAAGAAGGTGTGGA 157
||||||||| ||||||||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct 1 TTTTCTTGTTCCCATACTCATATGGCAGAAGAAGGTTATCAGTGGACAAGAAGGTGTGGA 60
Query 158 AACAACGCCGTTGAAGATCCTTTTGTTTATGAGCCACCTCTTTTCTTTCTGCCTCAAGAC 217
||| |||||||||||||| ||||||| ||||||||||||| |||||||| ||||||||
Sbjct 61 AACGACGCCGTTGAAGATATTTTTGTTAATGAGCCACCTCTATTCTTTCTTCCTCAAGAA 120
Query 218 CAACATCATATGCATGGGCTCATGCCAAATGAAGATTTCATTGCCAACAAGTTCGTCACA 277
||||||| || | ||||||||||||||||||||| |||| |||||||||||||||||
Sbjct 121 CAACATC--AT--A--GGCTCATGCCAAATGAAGATTCCATTACCAACAAGTTCGTCACA 174
Query 278 TCAACACTTTACTCCGGTCCACGAATCCAAGATATTGCAAACGCTCTGGCCTTGGTCGAA 337
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 175 TCAACACTTTACTCCGGTCCACGAATCCAAGATATCGCAAACGCTCTGGCCTTGGTTGAA 234
Query 338 CCCCTGACCCACCCAGTCCGAGAAATCTCTAAATCAACAGTTCCTCTTTTGGAAAGAAGT 397
|||||| |||||||||||| ||||||||| |||||||| ||||| | ||||||||||||
Sbjct 235 CCCCTGTCCCACCCAGTCCCAGAAATCTCCAAATCAACGGTTCCACGGTTGGAAAGAAGT 294
Query 398 ACTTTGAGCAAGGTGGATAGGTACACTTTAAAGGTGAAGAACAATAGTAATGGAATGTGT 457
||||||| ||||||||||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct 295 ACTTTGAACAAGGTGGATAAGTACACTTTAAAGGTGAAGAATAATAGTAATGGAATGTGT 354
Query 458 GATGATGGATACAAATGGAGAAAATATGGCCAAAAATCAATCAAAAATAGCCCTAACCCA 517
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 355 GATGATGGATACAAATGGAGAAAATATGGCCAAAAATCAATCAAAAATAGCCCTAACCCG 414
Query 518 AGGAGTTATTACAAGTGCACAAACCCAATATGCAATGCAAAGAAGCAAGTGGAGAGATCA 577
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 415 AGGAGTTATTACAAGTGCACAAACCCAATATGCAATGCTAAGAAGCAAGTGGAGAGATCA 474
Query 578 ATTGATGAGTCTAACACATATATCATTACCTACGAAGGTTTCCACTTCCACTATACTTAC 637
||||||||| |||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 475 ATTGATGAGCCTAACACATATATCATCACCTACGAAGGTTTCCACTTTCACTATACTTAC 534
Query 638 CCTTTCTTCCTACCCGATAAGACACGTCAATGGCCCAATaaaaaaaCGAAAATACATAAA 697
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 535 CCTTTCTTCCTACCCGATAAGACACATCAATGGCCCAATAAAAAAACGAAAATACATAAA 594
Query 698 CATAATGCTCAAGATATGAACAAAAAATCTCAAACCCAAGAAGAGAGCAAAGAAGCACAA 757
|| |||||||||| ||||||||| |||||||||||||||||| ||||||||||| |||
Sbjct 595 TATTATGCTCAAGAGATGAACAAAGGATCTCAAACCCAAGAAGAAAGCAAAGAAGCCCAA 654
Query 758 TTAGGTGAGCTCACCAACCAAAATCATCCAGTCAATAAAGCCCAAGAAAACACACCGGCA 817
|||||||||| | ||||||||||||| |||||| |||| ||||||||||||||||||| |
Sbjct 655 TTAGGTGAGCCCGCCAACCAAAATCAGCCAGTCCATAAGGCCCAAGAAAACACACCGGTA 714
Query 818 AATCTCGAAGAGGGATTGTTTTTTCCGGTTGATCAGTGTCGGCCGCAACAAGGGCTTCTA 877
||||||||||| | ||||||||| ||||||||||||||||| | ||||||||||||| ||
Sbjct 715 AATCTCGAAGATGAATTGTTTTTCCCGGTTGATCAGTGTCGACGGCAACAAGGGCTTTTA 774
Query 878 GAAGATGTGGTAGCTCCGGCAATGAAAAATATTCCTACCAGGGACAGTGTTTTGACAGCT 937
||||||||||| ||||| ||||||||||||||||| |||| ||||||||||||||||||
Sbjct 775 GAAGATGTGGTGGCTCCAGCAATGAAAAATATTCCGACCAAGGACAGTGTTTTGACAGCC 834
Query 938 TCTTG 942
|||||
Sbjct 835 TCTTG 839
> Ahg915921 jgi|Araly1|915921|Al_scaffold_0008_672
Length=939
Score = 1146 bits (620), Expect = 0.0
Identities = 757/824 (92%), Gaps = 6/824 (1%)
Strand=Plus/Plus
Query 119 ATGGAAGAAGAAGGTTATCAGTGGGCAAGAAGGTGTGGAAACAACGCCGTTGAAGATCCT 178
|||| |||| |||||| ||||||| ||||||||||||||||| |||||||||||||| |
Sbjct 1 ATGGCAGAAAAAGGTTCTCAGTGGACAAGAAGGTGTGGAAACGACGCCGTTGAAGATATT 60
Query 179 TTTGTTTATGAGCCACCTCTTTTCTTTCTGCCTCAAGACCAACATCATATGCATGGGCTC 238
|||||| ||||||||||||| |||||||| ||||||| ||||||| || | |||||
Sbjct 61 TTTGTTAATGAGCCACCTCTATTCTTTCTTTCTCAAGAACAACATC--AT--A--GGCTC 114
Query 239 ATGCCAAATGAAGATTTCATTGCCAACAAGTTCGTCACATCAACACTTTACTCCGGTCCA 298
|||||| ||||||||| |||| |||||||||| ||||||||||||||||||||||||||
Sbjct 115 ATGCCATATGAAGATTCCATTACCAACAAGTTTGTCACATCAACACTTTACTCCGGTCCG 174
Query 299 CGAATCCAAGATATTGCAAACGCTCTGGCCTTGGTCGAACCCCTGACCCACCCAGTCCGA 358
|||||||||||||| ||||||||||||| |||||| ||||||||| |||||||||||||
Sbjct 175 CGAATCCAAGATATCGCAAACGCTCTGGTCTTGGTTGAACCCCTGTCCCACCCAGTCCGG 234
Query 359 GAAATCTCTAAATCAACAGTTCCTCTTTTGGAAAGAAGTACTTTGAGCAAGGTGGATAGG 418
|||||||| |||||||| ||||| | ||||||||||||||||||| ||||||||||| |
Sbjct 235 GAAATCTCCAAATCAACGGTTCCACGGTTGGAAAGAAGTACTTTGAACAAGGTGGATAAG 294
Query 419 TACACTTTAAAGGTGAAGAACAATAGTAATGGAATGTGTGATGATGGATACAAATGGAGA 478
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 295 TACACTTTAAAGGTGAAGAATAATAGTAATGGAATGTGTGATGATGGATACAAATGGAGA 354
Query 479 AAATATGGCCAAAAATCAATCAAAAATAGCCCTAACCCAAGGAGTTATTACAAGTGCACA 538
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 355 AAATATGGCCAAAAATCAATCAAAAATAGCCCTAACCCGAGGAGTTATTACAAGTGCACA 414
Query 539 AACCCAATATGCAATGCAAAGAAGCAAGTGGAGAGATCAATTGATGAGTCTAACACATAT 598
||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct 415 AACCCAATATGCAATGCTAAGAAGCAAGTGGAGAGATCAATTGATGAGCCTAACACATAT 474
Query 599 ATCATTACCTACGAAGGTTTCCACTTCCACTATACTTACCCTTTCTTCCTACCCGATAAG 658
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 475 ATCATCACCTACGAAGGTTTCCACTTTCACTATACTTACCCTTTCTTCCTACCCGATAAG 534
Query 659 ACACGTCAATGGCCCAATaaaaaaaCGAAAATACATAAACATAATGCTCAAGATATGAAC 718
|||| |||||||||||||||||||||||||||||||||| || |||||||||| ||||||
Sbjct 535 ACACATCAATGGCCCAATAAAAAAACGAAAATACATAAATATTATGCTCAAGAGATGAAC 594
Query 719 AAAAAATCTCAAACCCAAGAAGAGAGCAAAGAAGCACAATTAGGTGAGCTCACCAACCAA 778
|| |||||||||||||||||| ||||||||||| ||||||||||||| | ||||||||
Sbjct 595 AACGGATCTCAAACCCAAGAAGAAAGCAAAGAAGCCCAATTAGGTGAGCCCGCCAACCAA 654
Query 779 AATCATCCAGTCAATAAAGCCCAAGAAAACACACCGGCAAATCTCGAAGAGGGATTGTTT 838
||||| |||||| |||| ||||||||||||||||||| |||||||||||| | |||||||
Sbjct 655 AATCAGCCAGTCCATAAGGCCCAAGAAAACACACCGGTAAATCTCGAAGATGAATTGTTT 714
Query 839 TTTCCGGTTGATCAGTGTCGGCCGCAACAAGGGCTTCTAGAAGATGTGGTAGCTCCGGCA 898
|| ||||||||||||||||| | ||||||||||||| ||||||||||||| ||||| |||
Sbjct 715 TTCCCGGTTGATCAGTGTCGACGGCAACAAGGGCTTTTAGAAGATGTGGTGGCTCCAGCA 774
Query 899 ATGAAAAATATTCCTACCAGGGACAGTGTTTTGACAGCTTCTTG 942
|||||||||||||| || | ||||||||||||||||||||||||
Sbjct 775 ATGAAAAATATTCCGACTAAGGACAGTGTTTTGACAGCTTCTTG 818
> Ahg948847 jgi|Araly1|948847|scaffold_800734.1
Length=902
Score = 737 bits (399), Expect = 0.0
Identities = 483/522 (93%), Gaps = 11/522 (2%)
Strand=Plus/Plus
Query 98 TTTTCTTGTCCCCATACTCATATGGAAGAAGAAGGTTATCAGTGGGCAAGAAGGTGTGGA 157
||||||||| ||||||||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct 1 TTTTCTTGTTCCCATACTCATATGGCAGAAGAAGGTTATCAGTGGACAAGAAGGTGTGGA 60
Query 158 AACAACGCCGTTGAAGATCCTTTTGTTTATGAGCCACCTCTTTTCTTTCTGCCTCAAGAC 217
||| |||||||| ||||| ||||||| ||||||||||||| |||||||| ||||||||
Sbjct 61 AACGACGCCGTTAAAGATATTTTTGTTAATGAGCCACCTCTATTCTTTCTTCCTCAAGAA 120
Query 218 CAACATCATATGCATGGGCTCATGCCAAATGAAGATTTCATTGCCAACAAGTTCGTCACA 277
||||||| || | ||||||||||||||||||||| |||| |||||||||||||||||
Sbjct 121 CAACATC--AT--A--GGCTCATGCCAAATGAAGATTCCATTACCAACAAGTTCGTCACA 174
Query 278 TCAACACTTTACTCCGGTCCACGAATCCAAGATATTGCAAACGCTCTGGCCTTGGTCGAA 337
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 175 TCAACACTTTACTCCGGTCCACGAATCCAAGATATCGCAAACGCTCTGGCCTTGGTTGAA 234
Query 338 CCCCTGACCCACCCAGTCCGAGAAATCTCTAAATCAACAGTTCCTCTTTTGGAAAGAAGT 397
|||||| |||||||||||| ||||||||| |||||||| ||||| | ||||||||||||
Sbjct 235 CCCCTGTCCCACCCAGTCCCAGAAATCTCCAAATCAACGGTTCCACGGTTGGAAAGAAGT 294
Query 398 ACTTTGAGCAAGGTGGATAGGTACACTTTAAAGGTGAAGAACAATAGTAATGGAATGTGT 457
||||||| ||||||||||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct 295 ACTTTGAACAAGGTGGATAAGTACACTTTAAAGGTGAAGAATAATAGTAATGGAATGTGT 354
Query 458 GATGATGGATACAAATGGAGAAAATATGGCCAAAAATCAATCAAAAATAGCCCTAACCCA 517
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 355 GATGATGGATACAAATGGAGAAAATATGGCCAAAAATCAATCAAAAATAGCCCTAACCCG 414
Query 518 AGGAGTTATTACAAGTGCACAAACCCAATATGCAATGCAAAGAAGCAAGTGGAGAGATCA 577
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 415 AGGAGTTATTACAAGTGCACAAACCCAATATGCAATGCTAAGAAGCAAGTGGAGAGATCA 474
Query 578 ATTGATGAG--T--C-TAACACATATATCATTACCTACGAAG 614
||||||||| | | ||||||||||||||| ||||||||||
Sbjct 475 ATTGATGAGCCTAACGTAACACATATATCATCACCTACGAAG 516
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40677152439
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5