BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G43300.1
Length=1532
Score E
Sequences producing significant alignments: (Bits) Value
Ahg948842 jgi|Araly1|948842|scaffold_800729.1 1738 0.0
> Ahg948842 jgi|Araly1|948842|scaffold_800729.1
Length=1165
Score = 1738 bits (941), Expect = 0.0
Identities = 1094/1168 (94%), Gaps = 9/1168 (1%)
Strand=Plus/Plus
Query 184 TCTTTGTTC-GCAAGAAACTAAACCATGGCTCTTGAAACTATGACATTGTCTTTATCTAG 242
||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct 1 TCTTTGTTCTGCAAGAAACTAAACCATGGCTCTTGAAGCTATGACATTGTCTTTATCCAA 60
Query 243 TTCTGCCATGTTATCATCAGGTGTTGTTGAAGATGATAAGAAGCAAGAGGCTA-TTGTTT 301
|||||||||||| ||||||||||||||||||||||||||||||||||| || | ||||||
Sbjct 61 TTCTGCCATGTTTTCATCAGGTGTTGTTGAAGATGATAAGAAGCAAGAAGC-ATTTGTTT 119
Query 302 TCCCTAAATTTGTTTTGATGGGTCATAGAGGATTTGGGATGAACATGCTTCAATCTCCGG 361
|||| ||||||||| |||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 120 TCCCCAAATTTGTTGTGATGGGTCATAGAGGTTTTGGGATGAACATGCTTCAATCTCCGG 179
Query 362 ACGAGAAAATGAAATTTATCAAAGAAAATTCTCTTCTTTCTTTTAATGTTGCTGCAGATT 421
|||||||||||||||||||||||||||||||| |||||||||| | ||||||||||||||
Sbjct 180 ACGAGAAAATGAAATTTATCAAAGAAAATTCTATTCTTTCTTTCAGTGTTGCTGCAGATT 239
Query 422 TTCCTATTGACTTCATTGAGTTTGATGTCCAGGTAACTAGAGATGGTTGCCCTGTAATTT 481
| |||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||
Sbjct 240 TCCCTATTGACTTCATTGAGTTCGATGTCCAGGTAACAAGAGATGGTTGCCCTGTTATTT 299
Query 482 TCCATGATATCTTCATGTTCACGCAAGAACAGGGAGTGATTATTGAGAAAAGAGTAACGG 541
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 300 TCCATGATATCTTCATGTTCACGCAAGAACAGGGAGTGATTATTGAGAAAAGAGTAACAG 359
Query 542 AAATGGATTTACATGAATTTCTCTCATATGGACCACAAAGGGATGGTACAAATGTGAAGC 601
|||||| |||||||||||||||||||||||||||||||| |||||| |||||||| ||||
Sbjct 360 AAATGGCTTTACATGAATTTCTCTCATATGGACCACAAAAGGATGGAACAAATGTAAAGC 419
Query 602 CTATGTGGAGGAAGACAAAAGATGGTAGAATTTTCGAGTGGAAAGTCGAAAAGGATGATC 661
|||||| ||| |||||||||||||||||| ||||||| |||| |||||||||||||| ||
Sbjct 420 CTATGTTGAGAAAGACAAAAGATGGTAGAGTTTTCGAATGGACAGTCGAAAAGGATGCTC 479
Query 662 CTTTGTGTACCCTTGAAGATGCTTTCCTAAATGTTAAACACTCACTCGGATTCAATATCG 721
||||||||||||||||||| |||||| |||| ||||||||||||||||||||||||||||
Sbjct 480 CTTTGTGTACCCTTGAAGAAGCTTTCGTAAAAGTTAAACACTCACTCGGATTCAATATCG 539
Query 722 AGCTCAAATTCGATGATAATACCGTATATGGAGAAGGAGAGTTACGTCAAACTCTTGACA 781
||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||
Sbjct 540 AGCTCAAATTCGATGATAATACCGTTTATGGAGAAGAAGAGTTACGTCAAACTCTTGACA 599
Query 782 ACATCTTGACGGTTGTAAATGAACATTCCAAGAACCGGCCTATTATATTCTCGAGCTTTC 841
||||||||| ||||||| |||| ||| ||||||||||||| ||||| |||||||||||||
Sbjct 600 ACATCTTGAAGGTTGTAGATGAGCATGCCAAGAACCGGCCCATTATCTTCTCGAGCTTTC 659
Query 842 ATCCTGACGCGGCTCGACTCATCAGGAATATGCAAAGGTGTTATCCTGTATTCTTCTTAA 901
||||| | |||| ||||||||| || |||||||||||| ||||||||||||||||||||
Sbjct 660 ATCCTCATGCGGTTCGACTCATTAGAAATATGCAAAGGAATTATCCTGTATTCTTCTTAA 719
Query 902 CAAATGGAGGATGTGAAATCTATAAGGATGTGAGAAGGAACTCATTAGACGAGGCCATCA 961
||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||| |
Sbjct 720 CAAATGGTGGATGTGAAATTTATAAGGATGTCAGAAGGAACTCATTAGACGAGGCCATAA 779
Query 962 AGCTTTGCAAAGAAAGCGGTTTGCAAGGGCTTGTCTCTGAGGTTAAGGCCATATTAAGAA 1021
||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct 780 AGCTTTGCAAAGAAAGCGGTTTGCAAGGGATTGTATCTGAGGTTAAGGCCATATTAAGAA 839
Query 1022 CCCCAAACGCAATCACACGAGTCAAAGATTCAAAACTTTCACTTCTATCTTATGGCCAGC 1081
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 CACCAAACGCAATCACACGAGTCAAAGATTCAAAACTTTCACTTCTATCTTATGGCCAGC 899
Query 1082 TTAACAATGTGGTAGAGGTGATTTACTTGCAATATCTGATGGGTGTGGAGGGAGTGATTG 1141
||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 900 TTAACAATGTGGTGGAGGTGATTTACTTACAATATCTGATGGGTGTGGAGGGAGTGATTG 959
Query 1142 TTGATATGGTCAAGGACATCTCCGAAGCCATTGCGAATATCGAAGTTACAAACGAGGATG 1201
|||||||||||||||||||||| |||||||| ||||||||||||||||||||| |||| |
Sbjct 960 TTGATATGGTCAAGGACATCTCTGAAGCCATCGCGAATATCGAAGTTACAAACAAGGACG 1019
Query 1202 ATTGTGAAGGTGAGGATG-AAAGAAAGTGTCTGATTAGGTTTGGAGAGGAGAGGAAAAAA 1260
|||| |||| ||| |||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct 1020 ATTGCGAAGATGACGATGGAAA-AAAGTGTCTGATTAGGTTTGGAGAGGAGAGGAAAAA- 1077
Query 1261 G-TGGAAATTACTAAGGAT-ATGATCACTTTGTTAAATAAGTTCGTACCAAAACTGCTTT 1318
| |||||||| |||||||| | |||||||||||||| ||||||||||||||||||||||
Sbjct 1078 GCTGGAAATTTCTAAGGATGA-GATCACTTTGTTAACTAAGTTCGTACCAAAACTGCTTC 1136
Query 1319 AACAATGAAGATTTCGCTTCATTTACAC 1346
|||||||||||||| |||||||| ||||
Sbjct 1137 AACAATGAAGATTTTGCTTCATTAACAC 1164
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57363908970
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5