BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G43320.1
Length=2205
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494671 jgi|Araly1|494671|fgenesh2_kg.8__487__AT5G43320.1 2643 0.0
Ahg919122 jgi|Araly1|919122|scaffold_100403.1 1291 0.0
> Ahg494671 jgi|Araly1|494671|fgenesh2_kg.8__487__AT5G43320.1
Length=2060
Score = 2643 bits (1431), Expect = 0.0
Identities = 1590/1664 (96%), Gaps = 21/1664 (1%)
Strand=Plus/Plus
Query 542 TTTTAAGAGATCGAAGAAAGGAGGAAGCTTTTTGATTTGGTAACGATGGATCGTGTGGTT 601
||||||||||| |||||||||||||| ||||||||||||| |||||||||||||||||||
Sbjct 418 TTTTAAGAGATTGAAGAAAGGAGGAAACTTTTTGATTTGGAAACGATGGATCGTGTGGTT 477
Query 602 GGTGGTAAGTATAAGCTTGGACGTAAACTTGGAAGTGGATCATTTGGTGAACTTTTTCTA 661
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 478 GGTGGCAAGTATAAGCTTGGACGTAAACTTGGAAGTGGTTCATTTGGTGAACTTTTTCTA 537
Query 662 GGGGTTAATGTACAAACTGGAGAAGAAGTTGCTGTGAAGCTTGAACCTGCGAGAGCTAGA 721
|||||||||||||||||||| |||||||| ||||||||||||||||||||||| |||||
Sbjct 538 GGGGTTAATGTACAAACTGGTGAAGAAGTAGCTGTGAAGCTTGAACCTGCGAGGGCTAGG 597
Query 722 CATCCTCAACTTCATTATGAATCAAAGCTTTATATGCTTCTTCAAGGAGGAACTGGTATT 781
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 598 CATCCTCAACTTCATTATGAATCAAAGCTCTATATGCTTCTTCAAGGAGGAACTGGAATT 657
Query 782 CCACATCTAAAATGGTATGGGGTTGAGGGTGAATACAACTGTATGGTGATTGACCTTTTG 841
|| |||||||||||||||||||| |||||||||| |||||||||||||||||| ||||||
Sbjct 658 CCTCATCTAAAATGGTATGGGGTAGAGGGTGAATTCAACTGTATGGTGATTGATCTTTTG 717
Query 842 GGTCCGAGTATGGAGGATTTATTTAATTATTGTAGTCGGAGGTTCAATCTAAAGACGGTT 901
|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 718 GGTCCGAGCATGGAGGATTTATTTAATTATTGTAGTCGGAGGTTTAATCTAAAGACGGTT 777
Query 902 CTAATGCTCGCAGATCAAATGATCAATAGAGTTGAGTATATGCATGTCCGGGGATTTCTT 961
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 778 CTAATGCTCGCAGATCAGATGATAAATAGAGTTGAGTATATGCATGTCCGGGGATTTCTT 837
Query 962 CATCGTGACATAAAGCCTGATAACTTTTTGATGGGTCTTGGACGCAAAGCGAACCAGGTG 1021
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 CATCGTGACATAAAGCCAGATAACTTTTTGATGGGTCTTGGACGCAAAGCGAACCAGGTG 897
Query 1022 TACATCATTGACTACGGACTTGCAAAAAAGTATAGAGATCTCCAAACTCATAGACACATT 1081
||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 898 TACATCATTGACTACGGACTTGCAAAAAAGTATAGAGATCTTCAAACTCATAGGCACATT 957
Query 1082 CCCTACAGGGAAAACAAGAATCTTACTGGAACAGCTCGATATGCAAGTGTTAACACTCAT 1141
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 958 CCCTACAGGGAAAACAAGAATCTTACTGGAACAGCCCGATATGCAAGTGTTAACACTCAT 1017
Query 1142 CTTGGAATTGAGCAAAGTAGGAGGGACGATCTGGAATCTCTTGGCTACGTGCTTATGTAT 1201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1018 CTTGGAATTGAGCAAAGTAGGAGGGACGATCTGGAATCTCTTGGCTACGTGCTTATGTAT 1077
Query 1202 TTTCTTCGAGGAAGTCTTCCTTGGCAAGGCCTTCGTGCGGGTACCAAAAAACAGAAGTAT 1261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1078 TTTCTTCGAGGAAGTCTTCCTTGGCAAGGCCTTCGTGCGGGTACCAAAAAACAGAAGTAT 1137
Query 1262 GACAAGATCAGCGAAAAGAAAAGGCTTACACCTGTAGAGGTTCTCTGTAAATCCTTTCCA 1321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1138 GACAAGATCAGCGAAAAGAAAAGGCTTACACCTGTAGAGGTTCTCTGTAAATCCTTTCCA 1197
Query 1322 CCTGAGTTCACATCATACTTCCTCTATGTACGATCATTGCGGTTTGAAGACAAACCAGAT 1381
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1198 CCTGAGTTCACATCATACTTCCTCTATGTACGATCATTGCGGTTCGAAGACAAACCAGAT 1257
Query 1382 TATCCATACCTAAAGAGGCTTTTCAGGGATCTCTTTATTCGAGAAGGTTATCAGTTTGAC 1441
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1258 TATCCATACCTAAAGAGGCTTTTCAGGGATCTCTTCATTCGAGAAGGTTATCAGTTTGAC 1317
Query 1442 TATGTATTTGATTGGACAATCTTGAAGTATCCACAGTTTAGTTCGGGCTCCAGCTCTAGC 1501
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1318 TATGTATTTGATTGGACAATCTTGAAGTATCCACAGTTTAGTTCCGGCTCCAGCTCTAGC 1377
Query 1502 TCCAAGCCAAGATCAAGCCTGAGACCAGCTATGAATCCTCCAGTACCAATTGCCGAAAGA 1561
||||| ||||||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 1378 TCCAAACCAAGATCAAGCCTGAGACCAGCTATGAATCCTCCAGTACCAACTGCGGAAAGA 1437
Query 1562 CCAGATAAACCTTCAGCTGGAGCTGGGCAAGACAGTCGAGATAGATTCTCAGGTGCTTTA 1621
|||||||||| ||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 1438 CCAGATAAACATTCAGCTGGCGCTGGGCAAGACAGTCGTGATAGATTCTCAGGTGCTTTA 1497
Query 1622 GAGGCATATGCTAGAAGAAATGGCTCAGGAAGCGGTGTGGTACAAGCTGATCGATCTAGA 1681
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1498 GAGGCATATGCTAGAAGAAATGGCTCAGGAAGCGGTGTGGTTCAAGCTGATCGATCTAGA 1557
Query 1682 CCAAGAACCTCAGAGAATGTATTAGCATCGTCAAAGGATACAACACCACAAAACTATGAG 1741
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 1558 CCAAGAACCTCAGAGAATGTATTAGCATCATCAAAGGATACAACTCCACAAAACTATGAG 1617
Query 1742 AGAGTCGAAAGACCAATCTCTTCAACAAGACACGCAAGTTCTTCAAGAAAAGCTGTTGTA 1801
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1618 AGAGTCGAAAGACCAATCTCTTCAACAAGACACGCAAGTTCGTCAAGAAAAGCTGTTGTC 1677
Query 1802 TCGAGCGTACGAGCCACTTCTTCAGCTGATTTCACAGAGAACCGCTCTAGCAGAGTTGTC 1861
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1678 TCGAGCGTACGAGCCACTTCTTCAGCTGATTTCACAGAGAACCGCTCGAGCAGAGTTGTC 1737
Query 1862 CCAAGCAATGGCCGTTCCTCAACCGCTCAGAGGACTCAGCTCGTCCCTGACCCAACCACT 1921
|||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1738 CCAAACAATGGCCGTTCCTCAACCGCTCAGAGGACTCAGCTTATCCCTGACCCAACCACT 1797
Query 1922 AGACCGTCATCTTCTTCTTTTACCCGAGCTGCGCCGTCGAGGACTGCTCGTGACATCACG 1981
||||| || |||||||||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct 1798 AGACCATCGTCTTCTTCTTTTGCCCGAGCTGCGCCGTCGAGGACTGCGCGTGACATCACG 1857
Query 1982 CTCCAGAGCTTTGAGCTACTCACCATAGGGAATGGAAAGAGGAAGTGAGAGGCTTGGCTT 2041
||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1858 CTCCAGAGCCTTGAGCTACTCACCATAGGGAATGGAAAGAGGAAGTGAGAAGCTTGG--- 1914
Query 2042 TATCGTGAGCGTGTTGGAGGACACTGCGACATTTTAATGGATGGAGACTTTGTTTTTATT 2101
| | || | || | ||||||||| ||||||||| ||||||||||||||
Sbjct 1915 -A--G-GA---------A--AC--TACGACATTTTTATGGATGGATACTTTGTTTTTATT 1957
Query 2102 TCACGAAATTATCGGTTTCCTAATTTAAGGAATAAATCGAACATCATTTGATTACAAATT 2161
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 1958 TCACGAAATTATCGGTTTCCTAATTTAAGGAATAAATCGAACTTCATTTGATTACAATTT 2017
Query 2162 ATATGTGATAAAGTATATGGTTTTAACTTGTTAAGCTCATCACT 2205
||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 2018 ATATGTGATAA-GTATATGGTTTTAACTTGTTAAGCTCTTCACT 2060
> Ahg919122 jgi|Araly1|919122|scaffold_100403.1
Length=1447
Score = 1291 bits (699), Expect = 0.0
Identities = 1140/1345 (85%), Gaps = 62/1345 (5%)
Strand=Plus/Plus
Query 577 TTTGGT-AACGATGGATCGTGTGGTTGGTGGTAAGTAT-AAGCTTGGACGTAAACTTGGA 634
|||||| || ||||||||||||||||||||||||| | ||||| |||||||| ||||||
Sbjct 10 TTTGGTGAAAAATGGATCGTGTGGTTGGTGGTAAGT-TCAAGCTCGGACGTAAGCTTGGA 68
Query 635 AGTGGATCATTTGGTGAACTTTTTCTAGGGGTTAATGTACAAACTGGAGAAGAAGTTGCT 694
||||| || ||||||||| |||| ||||| || ||||||||||||||||||||||| |||
Sbjct 69 AGTGGTTCCTTTGGTGAAATTTTCCTAGGAGTCAATGTACAAACTGGAGAAGAAGTGGCT 128
Query 695 GTGAAGCTTGAA-C-CTGCGAGAGCTAGACATCCTCAACTTCATTATGAATCAAAGCTTT 752
|| || |||||| | || || | ||||| |||||||| |||||||| || ||||||||||
Sbjct 129 GTTAAACTTGAACCTCTCCG-G-GCTAGGCATCCTCAGCTTCATTACGAGTCAAAGCTTT 186
Query 753 ATATGCTTCTTCAAGGAGGAACTGGTATTCCACATCTAAAATGGTATGGGGTTGAGGGTG 812
|||||||||| |||||||||||||||||||| || || ||||||| ||| ||||||||||
Sbjct 187 ATATGCTTCTCCAAGGAGGAACTGGTATTCCTCACCTCAAATGGTTTGGTGTTGAGGGTG 246
Query 813 AATACAACTGTATGGTGATTGACCTTTTGGGTCCGAGTATGGAGG-ATTTATTTAATTAT 871
||| |||||||||||| || |||||| | ||||| |||||||||| |||| || || |||
Sbjct 247 AATTCAACTGTATGGTTATCGACCTTCTCGGTCCTAGTATGGAGGAATTT-TTCAACTAT 305
Query 872 TGTAGTCGGA-GGTTCAATCTAAAGACGGTTCTAATGCTCGCAGATCAAATGATCAATAG 930
|| |||| || |||| ||| ||||| |||||||||||||| ||||| ||||| |||||
Sbjct 306 TGCAGTC-GATCCTTCACTCTTAAGACTGTTCTAATGCTCGCTGATCAGATGATAAATAG 364
Query 931 AGTTGAGTATATGCATGTCCG-GGGATTTCTTCATCGTGACATAAAGCCTGATAACTTTT 989
||| |||||||||||||| || ||| |||||||||||||| || ||||| ||||||||||
Sbjct 365 AGTCGAGTATATGCATGTACGAGGG-TTTCTTCATCGTGATATCAAGCCAGATAACTTTT 423
Query 990 TGATGGGTCTTGGACGCAAAGCGAACCAGGTGTACATCATTGACTACGGACTTGCAAAAA 1049
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||| || |
Sbjct 424 TGATGGGTCTTGGACGCAAAGCAAACCAGGTGTACATCATTGACTACGGGCTTGCCAAGA 483
Query 1050 AGTATAGAGATCTCCAAACTCA-TAGACACATTCCCTACAGGGAAAACAAGAATCTTACT 1108
||||||||||||| ||||| || || || ||||| |||||||||||||||||||||||
Sbjct 484 AGTATAGAGATCTTCAAACACACAAG-CATATTCCATACAGGGAAAACAAGAATCTTACA 542
Query 1109 GGAACAGCTCGATATGCAAGTGTTAACACTCATCTTGGAATTGAGCAAAGTAGGAGGGAC 1168
||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 543 GGAACAGCTCGATATGCAAGTGTTAACACCCATCTTGGAATTGAGCAAAGTAGAAGGGAT 602
Query 1169 GATCTGGAATCTCTTGGCTACGTGCTTATGTATTTTCTTCGAGGAAGTCTTCCTTGGCAA 1228
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 603 GATCTGGAATCTCTTGGCTATGTGCTTATGTATTTTCTTCGAGGAAGCCTTCCTTGGCAA 662
Query 1229 GGCCTTCGTGCGGGTACCAAAAAACAGAAGTATGACAAGATCAGCGAAAAGAAAAGGCTT 1288
||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||| ||
Sbjct 663 GGCCTTCGTGCAGGTACCAAAAAGCAGAAGTATGACAAGATCAGTGAAAAGAAAAGACTA 722
Query 1289 ACACCTGTAGAGGTTCTCTGTAAATCCTTTCCACCTGAGTTCACATCATACTTCCTCTAT 1348
||||| || ||||| ||||||||| ||||||||||||||||||||| || || ||||||
Sbjct 723 ACACCAGTGGAGGTCCTCTGTAAAAACTTTCCACCTGAGTTCACATCGTATTTTCTCTAT 782
Query 1349 GTACGATCATTGCGGTTTGAAGACAAACCAGATTATCCATACCTAAAGAGGCTTTTCAGG 1408
|| || ||||| |||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 783 GTGCGTTCATTACGGTTTGAAGACAAACCAGATTATTCATACCTAAAGAGGCTTTTCAGA 842
Query 1409 GATCTCTTTATTCGAGAAGGTTATCAGTTTGACTATGTATTTGATTGGACAATCTTGAAG 1468
|| || ||||| ||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct 843 GAACTATTTATCCGAGAAGGTTATCAGTTTGACTATGTATTTGATTGGACAATATTGAGG 902
Query 1469 TATCCACAGTTTAGTTCGGGCTCCAGCTCTAGCTCCAAGCCAAGATCAAGCCTGAGACCA 1528
||||||||||| | || | |||||||| | ||||| |||||| |||| | ||||||
Sbjct 903 TATCCACAGTTCGGCTCCAGTTCCAGCTCCAATTCCAAACCAAGACCAAGTTTAAGACCA 962
Query 1529 GCTATGAATCCTCCAGTACCAAT-TGCCGA-AAGACCAGATAAA-CCTTCAGCTGGAGCT 1585
||||||||| |||||||||| | |||||| || | |||| ||| |||||| ||| ||
Sbjct 963 GCTATGAATATTCCAGTACCA-TCTGCCGACAA-AGCAGA-AAAGCCTTCAATTGG-GCA 1018
Query 1586 GGGCAAGACAGTCGAGATAGATTCTCAGGTGCTTTAGAGGCATAT-GCTAGAAGAAATGG 1644
|| || | | | ||||| | |||||||||| ||| |||||||| || |||||||||||
Sbjct 1019 GGACA-GCC-G-CGAGAG-G-TTCTCAGGTGTTTTCGAGGCATACAGC-AGAAGAAATGG 1072
Query 1645 CTCAGGAAGCGGTGTGGTACAAGCTGATCGATCT---AGACCAAGAACCTCAGAGAATGT 1701
|||||||| ||| || | |||||||||| |||| |||||||||||||||||||||||
Sbjct 1073 CTCAGGAACCGGCGT--T-CAAGCTGATCAATCTGGTAGACCAAGAACCTCAGAGAATGT 1129
Query 1702 A-TTAGCATCGTCAAAGGATACAACACCACAAAACTATGAGAGAGTCGAAAGACCAATCT 1760
|| ||||| ||| ||| || | | | ||| | | | ||||| | ||||| |
Sbjct 1130 TCTT-GCATC--CAA-GGA--CA-CGC-A-AAACC-A-G-GAGAG---A----CCAATAT 1170
Query 1761 CTTCAACAAG-ACACGCA-AGTTCTTCAAGAAAAGCTGTTG-TA--TCGAGCGTACGAGC 1815
||| | | || | || | ||||| ||||||||||| ||| | || || || |||||
Sbjct 1171 CTTTATCTAGGA-AC-CTGAGTTCGTCAAGAAAAGCAATTGCTGGGTCAAGTGTTCGAGC 1228
Query 1816 CACTTCTTCAGCTGATTTCACAGAGAACCGCTCTAGCAGAGTTGTCCCAAGCAATGGCCG 1875
|||||| |||||||||||||||||||| || || |||||| | |||||| ||| || ||
Sbjct 1229 CACTTCCTCAGCTGATTTCACAGAGAATCGATCAAGCAGACTCATCCCAAACAACGGTCG 1288
Query 1876 TTCCTCAACCGCTCAGAGGACTCAG 1900
||||| || |||||||||| |||
Sbjct 1289 GTCCTCTACAACTCAGAGGACCCAG 1313
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82998643855
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5