BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G43340.1
Length=1551
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494667 jgi|Araly1|494667|fgenesh2_kg.8__483__AT5G43340.1 2324 0.0
Ahg489725 jgi|Araly1|489725|fgenesh2_kg.6__2859__AT4G08878.1 953 0.0
Ahg489724 jgi|Araly1|489724|fgenesh2_kg.6__2858__AT4G08895.1 305 5e-82
Ahg497304 jgi|Araly1|497304|fgenesh2_kg.178__1__AT5G43350.1 228 1e-58
Ahg494662 jgi|Araly1|494662|fgenesh2_kg.8__478__AT5G43370.1 228 1e-58
Ahg494664 jgi|Araly1|494664|fgenesh2_kg.8__480__AT5G43350.1 200 2e-50
> Ahg494667 jgi|Araly1|494667|fgenesh2_kg.8__483__AT5G43340.1
Length=1557
Score = 2324 bits (1258), Expect = 0.0
Identities = 1458/1555 (94%), Gaps = 11/1555 (1%)
Strand=Plus/Plus
Query 1 ATGGCTAACGAAGAACAAGGAAGCATCTTGAAAGCTCTTGACGTTGCAAAGACTCAATGG 60
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGTCTAACGAAGAACAAGGAAGCATCTTGAAAGCTCTTGACGTTGCAAAGACTCAATGG 60
Query 61 TACCACGTCACGGCGGTTGTAGTCTCCGGTATGGGTTTCTTCACAGACTCATACGATCTC 120
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TACCACGTCACGGCGGTGGTAGTCTCCGGTATGGGTTTCTTCACAGACTCATACGATCTC 120
Query 121 TTCGTGATATCTCTTATCACGAAGCTTCTTGGCCGGATCTACTATCAGGTTCCTGGCTCC 180
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 121 TTCGTGATATCTCTTATCACGAAGCTACTTGGCCGGATCTACTATCAGGTTCCTGGCTCC 180
Query 181 TCCTCTCCCGGAAGCCTCCCTGACGGCATCTCTGCGGCCGTGAGTGGTGTGGCCTTCGCT 240
|||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 181 TCCTCTCCCGGAAGCCTCCCTGACGGTATCTCTGCCGCCGTGAGTGGTGTGGCCTTCGCC 240
Query 241 GGAACGTTTA-TCGGACAGATTTTCTTTGGGTGTCTTGGTGACAAGCTTGGACGTAAGAG 299
|||||||| | |||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 241 GGAACGTT-ACTCGGACAGATTTTCTTCGGATGTCTTGGTGACAAGCTTGGACGTAAGAG 299
Query 300 AGTCTATGGTTTGACTCTCTTGATCATGACCATATGCTCCATTTGTTCTGGTCTTTCCCT 359
||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct 300 AGTCTATGGTTTGACACTCTTGATCATGACCATATGCTCCATTGGTTCTGGTCTTTCTCT 359
Query 360 TGGAAGAGACCCGAAAACCGTCATGGTAACTCTCTGCTTCTTCCGCTTCTGGCTCGGGTT 419
|||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 360 TGGAAGAGACCCAAAAACTGTCATGGTAACTCTCTGCTTCTTCCGCTTCTGGCTCGGGTT 419
Query 420 TGGCATCGGTGGTGACTATCCTCTCTCGGCTACGATCATGTCCGAGTATTCCAACAAACG 479
||| ||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||
Sbjct 420 TGGTATCGGTGGTGACTATCCTCTCTCCGCTACGATCATGTCCGAGTATGCCAACAAACG 479
Query 480 TACTCGCGGTGCTTTCATAGCAGCTGTTTTCGGTATGCAAGG-GATTGGGATCCTTGCCG 538
||||||||| || ||||||||||| ||||||||||||||||| | ||||||||||||| |
Sbjct 480 TACTCGCGGAGCGTTCATAGCAGCGGTTTTCGGTATGCAAGGAG-TTGGGATCCTTGCTG 538
Query 539 CAGGAGCTGTCTCGTTACTTGTCTCAGCTGTTTTCGAGAGTAAGTTTCCGTCCCGAGCCT 598
||||||| || |||||||||||||| ||||||||||||||||||||||| || || || |
Sbjct 539 CAGGAGCGGTTTCGTTACTTGTCTCGGCTGTTTTCGAGAGTAAGTTTCCATCTCGGGCTT 598
Query 599 ATATATTGGATGGTGCAGCCTCCACCGTCCCACAGGCGGATTACGTTTGGAGGATCATCC 658
|||||||||| |||||||||||||| |||||||| || |||||||| |||||||||||||
Sbjct 599 ATATATTGGACGGTGCAGCCTCCACTGTCCCACAAGCAGATTACGTGTGGAGGATCATCC 658
Query 659 TGATGGTCGGCGCCTTACCAGCTCTCTTGACCTACTACTGGCGGATGAAGATGCCCGAAA 718
| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 659 TCATGGTAGGCGCCTTACCAGCTCTCTTGACTTACTACTGGCGGATGAAGATGCCCGAAA 718
Query 719 CCGCTCGTTACACGGCTCTTGTCTCCAAGAACGCGGAGCAAGCGGCTTTAGATATGACTA 778
| ||||||||||| ||||| ||| ||||||||||||| ||||| |||| ||||||||||
Sbjct 719 CTGCTCGTTACACCGCTCTAGTCGCCAAGAACGCGGAACAAGCAGCTTCGGATATGACTA 778
Query 779 AGGTTCTCAACGTAGACATTGAAGCCTCTGCCGCAAAGAATGATCAAGCTAGGGTTTCCT 838
||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 779 AGGTTCTCAACGTAGACATTGAAGCCTCTTCCGCAAAGAATGACCAAGCTAGGGTTTCCT 838
Query 839 CGGACGAGTTTGGCTTGTTCTCCATGAAGTTCCTTCGCCGTCACGGACTCCACTTACTCG 898
| |||||||||||||||||||||||||| |||||||||||||||||||| |||||| |||
Sbjct 839 CAGACGAGTTTGGCTTGTTCTCCATGAAATTCCTTCGCCGTCACGGACTTCACTTATTCG 898
Query 899 GAACAGCCTCCACATGGTTCCTCCTCGACATCGCTTTCTACAGCCAAAACTTGTTCCAGA 958
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 899 GAACAGCCTCCACATGGTTCCTCCTCGACATTGCTTTCTACAGCCAAAACTTGTTCCAGA 958
Query 959 AGGATATCTTCACCACCATTGGGTGGTTACCTTCGGCTAAAACCATGAACGCAATCCAAG 1018
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 959 AGGATATCTTCACCACCATCGGTTGGTTACCTTCGGCTAAAACCATGAACGCAATCCAAG 1018
Query 1019 AGCTCTACATGATCGCTAAGGCTCAAACCATAATCGCTTGTTGCAGCACCGTTCCCGGTT 1078
|||||| ||||||||||| ||||||||||||||||||||||||||| |||||||||||||
Sbjct 1019 AGCTCTTCATGATCGCTAGGGCTCAAACCATAATCGCTTGTTGCAGTACCGTTCCCGGTT 1078
Query 1079 ACTTTTTCACTGTAGGGTTCATCGATTATATGGGACGGAAAAAGATCCAGATCATGGGTT 1138
|| |||||||| || || |||||||||||||||||||||||||| ||| ||||||| |
Sbjct 1079 ACATTTTCACTATATTCTTGATCGATTATATGGGACGGAAAAAGATTCAGGTCATGGGAT 1138
Query 1139 TCGCTATGATGACCATCTTCATGCTCAGTTTAGCCATACCGTACCATCATTGGACCTTAC 1198
|||||||||||||| | |||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1139 TCGCTATGATGACCGTTTTCATGTTCAGTTTAGCCATACCGTACCATCATTGGACCTTAC 1198
Query 1199 CGGCTAACCGGATTGGTTTCGTCGTTCTTTACTCTTTCACATTTTTCTTCTCCAATTTTG 1258
|||||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||
Sbjct 1199 CGGCTAACCGGATTGGTTTCGTGGTTCTCTACTCTTTCACCTTTTTCTTCTCCAATTTTG 1258
Query 1259 GACCTAACGCAACTACTTTCATTGTCCCGGCTGAGATTTTCCCGGCGAGGATAAGGTCGA 1318
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 1259 GACCTAACGCAACTACTTTCATTGTCCCGGCTGAGATTTTTCCGGCGAGGATAAGGTCAA 1318
Query 1319 CTTGTCACGGTATATCGGCGGCGTCTGGTAAAGCCGGTGCGATGGTCGGTTCTTTCGGGT 1378
||||||||||||| ||||| ||||| ||||||||||||| ||||||||||||||||||||
Sbjct 1319 CTTGTCACGGTATCTCGGCAGCGTCGGGTAAAGCCGGTGTGATGGTCGGTTCTTTCGGGT 1378
Query 1379 TTTCGGCTTTGGTTAAAGCTTTGGGTATGAGTAACACGTTATACATCATGGCAGGAATCA 1438
|||| |||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 1379 TTTCTGCTTTGGTTAAAGCTTTGGGTATGAGTACCACGTTATACATCATGGGAGGAATCA 1438
Query 1439 AT-TTGCTTGGCTTG-CTTCTCACGTT---TACAATTCCGGAGACTAATGGGAAATCACT 1493
|| ||||| |||||| | ||||||| ||||||||||||| ||||||||| ||| ||
Sbjct 1439 ATCTTGCT-GGCTTGGCAA-TCACGTTAGGTACAATTCCGGAGCCTAATGGGATATCGCT 1496
Query 1494 TGAGGAGCTTTCCGGCGAAACTGAGCCGGAGAAAATCAAGGAGAAGATTGTTGTT 1548
|||||||||||||||||||||||| |||||||||||| |||||||||||||||||
Sbjct 1497 TGAGGAGCTTTCCGGCGAAACTGAACCGGAGAAAATCCAGGAGAAGATTGTTGTT 1551
> Ahg489725 jgi|Araly1|489725|fgenesh2_kg.6__2859__AT4G08878.1
Length=705
Score = 953 bits (516), Expect = 0.0
Identities = 643/705 (91%), Gaps = 6/705 (1%)
Strand=Plus/Plus
Query 52 ACTCAATGGTACCACGTCACGGCGGTTGTAGTCTCCGGTATGGGTTTCTTCACAGACTCA 111
||||||||||||||| ||||||| ||||||||| ||||||||||||| |||||||||||
Sbjct 1 ACTCAATGGTACCACTTCACGGCTGTTGTAGTCGCCGGTATGGGTTTTTTCACAGACTCG 60
Query 112 TACGATCTCTTCGTGATATCTCTTATCACGAAGCTTCTTGGCCGGATCTACTATCAGGTT 171
|| |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 61 TATGATCTCTTCGTGATATCTCTCATCACGAAGCTACTTGGCCGGATCTACTATCAGGTT 120
Query 172 CCTGGCTCCTCCTCTCCCGGAAGCCTCCCTGACGGCATCTCTGCGGCCGTGAGTGGTGTG 231
||||||||||||||||| |||||||||||||||||||||||||| |||||||| |||||
Sbjct 121 CCTGGCTCCTCCTCTCCTGGAAGCCTCCCTGACGGCATCTCTGCCGCCGTGAGCGGTGTA 180
Query 232 GCCTTCGCTGGAACGTTTATCGGACAGATTTTCTTTGGGTGTCTTGGTGACAAGCTTGGA 291
|||||||| ||||||||| |||||||||||||||| || ||||||||||||||||| |||
Sbjct 181 GCCTTCGCCGGAACGTTTCTCGGACAGATTTTCTTCGGATGTCTTGGTGACAAGCTCGGA 240
Query 292 CGTAAGAGAGTCTATGGTTTGACTCTCTTGATCATGACCATATGCTCCATTTGTTCTGGT 351
||||||||||||||||||||||| ||||||||||||||||| ||||||||| ||||||||
Sbjct 241 CGTAAGAGAGTCTATGGTTTGACACTCTTGATCATGACCATTTGCTCCATTGGTTCTGGT 300
Query 352 CTTTCCCTTGGAAGA-GACCCGAAAACCGTCATGGTAACTCTCTGCTTCTTCCGCTTCTG 410
||||| ||||||| | || ||||||||||||||||||||||||||||||||||| |||||
Sbjct 301 CTTTCTCTTGGAA-ACGATCCGAAAACCGTCATGGTAACTCTCTGCTTCTTCCGTTTCTG 359
Query 411 GCTCGGGTTTGGCATCGGTGGTGACTATCCTCTCTCGGCTACGATCATGTCCGAGTATTC 470
|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |
Sbjct 360 GCTCGGGTTTGGCATCGGTGGTGATTATCCTCTCTCGGCTACAATCATGTCCGAGTACGC 419
Query 471 CAACAAACGTACTCGCGGTGCTTTCATAGCAGCTGTTTTCGGTATGCAAGG-GATTGGGA 529
|||||||||||||| || || ||||||||||||||||| ||||||||||| | ||||||
Sbjct 420 TAACAAACGTACTCGAGGCGCGTTCATAGCAGCTGTTTTTGGTATGCAAGGAG-TTGGGA 478
Query 530 TCCTTGCCGCAGGAGCTGTCTCGTTACTTGTCTCAGC-TGTTTTCGAGAGTAAGTTTCCG 588
| ||||||||||||| || || ||||||||||| | | |||| |||| ||||| ||||
Sbjct 479 TACTTGCCGCAGGAGGGGTTTCTTTACTTGTCTC-GTATATTTTTGAGATTAAGTATCCG 537
Query 589 TCCCGAGCCTATATATTGGATGGTGCAGCCTCCACCGTCCCACAGGCGGATTACGTTTGG 648
|| || |||||||||||||| || |||||||||||||||||||||||||||||||| |||
Sbjct 538 TCTCGGGCCTATATATTGGACGGCGCAGCCTCCACCGTCCCACAGGCGGATTACGTGTGG 597
Query 649 AGGATCATCCTGATGGTCGGCGCCTTACCAGCTCTCTTGACCTACTACTGGCGGATGAAG 708
|||||||||||||||||||| |||||||| ||||||||||| ||||||||||| ||||||
Sbjct 598 AGGATCATCCTGATGGTCGGAGCCTTACCGGCTCTCTTGACATACTACTGGCGTATGAAG 657
Query 709 ATGCCCGAAACCGCTCGTTACACGGCTCTTGTCTCCAAGAACGCG 753
||||| ||||| ||||||||||| ||||| ||| |||||||||||
Sbjct 658 ATGCCTGAAACTGCTCGTTACACCGCTCTAGTCGCCAAGAACGCG 702
> Ahg489724 jgi|Araly1|489724|fgenesh2_kg.6__2858__AT4G08895.1
Length=399
Score = 305 bits (165), Expect = 5e-82
Identities = 196/211 (93%), Gaps = 2/211 (1%)
Strand=Plus/Plus
Query 1171 GCCATACCGTACCATCATTGGACCTTACCGGCTAACCGGATTGGTTTCGTCGTTCTT-TA 1229
|||||||||||||| |||||||| ||||||||||||||||||||||| || ||| || ||
Sbjct 181 GCCATACCGTACCACCATTGGACTTTACCGGCTAACCGGATTGGTTTTGTGGTT-TTCTA 239
Query 1230 CTCTTTCACATTTTTCTTCTCCAATTTTGGACCTAACGCAACTACTTTCATTGTCCCGGC 1289
|||| |||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 240 CTCTCTCACCTTTTTCTTCTCCAATTTTGGACCTAACGCAACTACGTTCATTGTCCCGGC 299
Query 1290 TGAGATTTTCCCGGCGAGGATAAGGTCGACTTGTCACGGTATATCGGCGGCGTCTGGTAA 1349
||||||||| ||||||||||| ||||| |||||||||||||| ||||| ||||| |||||
Sbjct 300 TGAGATTTTTCCGGCGAGGATTAGGTCTACTTGTCACGGTATCTCGGCTGCGTCGGGTAA 359
Query 1350 AGCCGGTGCGATGGTCGGTTCTTTCGGGTTT 1380
|||||||||||||||||||||||||||||||
Sbjct 360 AGCCGGTGCGATGGTCGGTTCTTTCGGGTTT 390
Score = 187 bits (101), Expect = 2e-46
Identities = 109/113 (96%), Gaps = 0/113 (0%)
Strand=Plus/Plus
Query 960 GGATATCTTCACCACCATTGGGTGGTTACCTTCGGCTAAAACCATGAACGCAATCCAAGA 1019
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 66 GGATATCTTCACCACCATAGGATGGTTACCTTCGGCTAAAACCATGAACGCAATCCAAGA 125
Query 1020 GCTCTACATGATCGCTAAGGCTCAAACCATAATCGCTTGTTGCAGCACCGTTC 1072
||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 126 GCTCTACATGATCGCCAAGGCTCAAACCATAATCGCTTGTTGCAGTACCGTTC 178
> Ahg497304 jgi|Araly1|497304|fgenesh2_kg.178__1__AT5G43350.1
Length=1603
Score = 228 bits (123), Expect = 1e-58
Identities = 408/544 (75%), Gaps = 26/544 (5%)
Strand=Plus/Plus
Query 849 TGGCTTGTTCTCC-ATGAAGTTCCTTCGCCGTCACGGACTCCACT-TACTCGGAAC-AGC 905
||||||||||||| | ||| |||||||| || || || || || | | || ||||| | |
Sbjct 729 TGGCTTGTTCTCCAAGGAA-TTCCTTCGGCGCCATGGGCTTCA-TCTCCTTGGAACTA-C 785
Query 906 CTCCACATGGTTCCTCCTCGACATCGCTTTCTACAGCCAAAACTTGTTCCAGAAGGATAT 965
|||||| ||||| | || ||||| || ||||||||||||||||||||||||||||||||
Sbjct 786 CTCCACTTGGTTTTTGCTTGACATTGCCTTCTACAGCCAAAACTTGTTCCAGAAGGATAT 845
Query 966 CTTCACCACCATTGGGTGGTTACCTTCGGCTAAA-ACCATGAACGCAATCCAAGAGCTCT 1024
||| | |||| || ||| | || | | | ||||||||||| | ||| ||| | |
Sbjct 846 TTTCTCGGCCATCGGATGGATCCCAAAGCC-AGCCACCATGAACGCGACCCATGAGGTTT 904
Query 1025 ACATGATCGCTAAGGCTCAAAC-CATAATCGCT-TGTTGCAGCACCGTTCCC-GGTTACT 1081
|| ||| |||| |||||| || | || |||| | |||||| || || ||| || ||||
Sbjct 905 TCAGGATTGCTAGGGCTCAGACTCTTA-TCGCCCT-TTGCAGTACAGT-CCCAGGCTACT 961
Query 1082 TTTTCACTGTAGGGTTCATCGATTAT-ATGGGACGGAAAAAGATCCAGATCATGGG-TTT 1139
||||| || | || || ||| || || ||| || ||||||| | ||||| |||
Sbjct 962 GGTTCACAGTTGCTTTTATTGAT-ATCATTGGAAGGTTTGCGATCCAGCTAATGGGATTT 1020
Query 1140 CGCTATGATGACCATCTTCATGCT--CAGTTTAGCCATACCGTACCATCATTGGACCTTA 1197
| ||||||||| | || ||| | || || ||| | || ||| | || |||||| |
Sbjct 1021 TTC-ATGATGACCGTTTTTATGTTTGCAATT--GCCTTCCCTTACAACCACTGGACCAAA 1077
Query 1198 CCGGCTAACCGGATTGGTTTCGTCGTTCTTTACTCTTTCACATTT-TTCTTCTCCAATTT 1256
|| | ||||| || || ||||| ||| | ||| || |||| ||| |||||| |||||||
Sbjct 1078 CCAGAAAACCGTATCGGATTCGTGGTTATGTACGCTCTCAC-TTTCTTCTTCGCCAATTT 1136
Query 1257 TGGACCTAACGCAACTACTTTCATTGTCCCGGCTGAGATTTTCCCGGCGAGGA-TAAGGT 1315
||| || || ||||| ||||| ||||||||||||||||| |||||||| || | ||||||
Sbjct 1137 TGGTCCAAATGCAACCACTTTTATTGTCCCGGCTGAGATATTCCCGGCCAG-ACTAAGGT 1195
Query 1316 CGACTTGTCACGGTATATCGGCGGCGTCTGGTAAAGCCGGTGCGATGGTCGGTTCTTTCG 1375
| || ||||| || |||||||| ||| ||||||| || || || || || || | ||||
Sbjct 1196 CAACATGTCATGGAATATCGGCCGCGGCTGGTAAGGCTGGAGCCATCGTTGGAGCCTTCG 1255
Query 1376 GGTT 1379
||||
Sbjct 1256 GGTT 1259
> Ahg494662 jgi|Araly1|494662|fgenesh2_kg.8__478__AT5G43370.1
Length=1188
Score = 228 bits (123), Expect = 1e-58
Identities = 408/544 (75%), Gaps = 26/544 (5%)
Strand=Plus/Plus
Query 849 TGGCTTGTTCTCC-ATGAAGTTCCTTCGCCGTCACGGACTCCACT-TACTCGGAAC-AGC 905
||||||||||||| | ||| |||||||| || || || || || | | || ||||| | |
Sbjct 468 TGGCTTGTTCTCCAAGGAA-TTCCTTCGGCGCCATGGGCTTCA-TCTCCTTGGAACTA-C 524
Query 906 CTCCACATGGTTCCTCCTCGACATCGCTTTCTACAGCCAAAACTTGTTCCAGAAGGATAT 965
|||||| ||||| | || ||||| || ||||||||||||||||||||||||||||||||
Sbjct 525 CTCCACTTGGTTTTTGCTTGACATTGCCTTCTACAGCCAAAACTTGTTCCAGAAGGATAT 584
Query 966 CTTCACCACCATTGGGTGGTTACCTTCGGCTAAA-ACCATGAACGCAATCCAAGAGCTCT 1024
||| | |||| || ||| | || | | | ||||||||||| | ||| ||| | |
Sbjct 585 TTTCTCGGCCATCGGATGGATCCCAAAGCC-AGCCACCATGAACGCGAGCCATGAGGTTT 643
Query 1025 ACATGATCGCTAAGGCTCAAAC-CATAATCGCT-TGTTGCAGCACCGTTCCC-GGTTACT 1081
|| ||| |||| |||||| || | || |||| | |||||| || || ||| || ||||
Sbjct 644 TCAGGATTGCTAGGGCTCAGACTCTTA-TCGCCCT-TTGCAGTACAGT-CCCAGGCTACT 700
Query 1082 TTTTCACTGTAGGGTTCATCGATTAT-ATGGGACGGAAAAAGATCCAGATCATGGG-TTT 1139
||||| || | || || ||| || || ||| || ||||||| | ||||| |||
Sbjct 701 GGTTCACAGTTGCTTTTATTGAT-ATCATTGGAAGGTTTGCGATCCAGCTAATGGGATTT 759
Query 1140 CGCTATGATGACCATCTTCATGCT--CAGTTTAGCCATACCGTACCATCATTGGACCTTA 1197
| ||||||||| | || ||| | || || ||| | || ||| | || |||||| |
Sbjct 760 TTC-ATGATGACCGTTTTTATGTTTGCAATT--GCCTTCCCTTACAACCACTGGACCAAA 816
Query 1198 CCGGCTAACCGGATTGGTTTCGTCGTTCTTTACTCTTTCACATTT-TTCTTCTCCAATTT 1256
|| | ||||| || || ||||| ||| | ||| || |||| ||| |||||| |||||||
Sbjct 817 CCAGAAAACCGTATCGGATTCGTGGTTATGTACGCTCTCAC-TTTCTTCTTCGCCAATTT 875
Query 1257 TGGACCTAACGCAACTACTTTCATTGTCCCGGCTGAGATTTTCCCGGCGAGGA-TAAGGT 1315
||| || || ||||| ||||| ||||||||||||||||| |||||||| || | ||||||
Sbjct 876 TGGTCCAAATGCAACCACTTTTATTGTCCCGGCTGAGATATTCCCGGCCAG-ACTAAGGT 934
Query 1316 CGACTTGTCACGGTATATCGGCGGCGTCTGGTAAAGCCGGTGCGATGGTCGGTTCTTTCG 1375
| || ||||| || |||||||| ||| ||||||| || || || || || || | ||||
Sbjct 935 CAACATGTCATGGAATATCGGCCGCGGCTGGTAAGGCTGGAGCCATCGTTGGAGCCTTCG 994
Query 1376 GGTT 1379
||||
Sbjct 995 GGTT 998
> Ahg494664 jgi|Araly1|494664|fgenesh2_kg.8__480__AT5G43350.1
Length=1800
Score = 200 bits (108), Expect = 2e-50
Identities = 384/515 (75%), Gaps = 28/515 (5%)
Strand=Plus/Plus
Query 849 TGGCTTGTTCTCC-ATGAAGTTCCTTCGCCGTCACGGACTCCACT-TACTCGGAAC-AGC 905
||||||||||||| | ||| |||||||| || || || || || | | || || || | |
Sbjct 926 TGGCTTGTTCTCCAAGGAA-TTCCTTCGGCGCCATGGGCTTCA-TCTCCTTGGGACTA-C 982
Query 906 CTCCACATGGTTCCTCCTCGACATCGCTTTCTACAGCCAAAACTTGTTCCAGAAGGATAT 965
|||||| ||||| | || ||||| || ||||||||||||||||||||||||||||||||
Sbjct 983 CTCCACTTGGTTTTTGCTTGACATTGCCTTCTACAGCCAAAACTTGTTCCAGAAGGATAT 1042
Query 966 CTTCACCACCATTGGGTGGTTACCTTCGGCTAAA-ACCATGAACGCAATCCAAGAGCTCT 1024
||| | |||| || ||| | || | | | ||||||||||| | ||| ||| | |
Sbjct 1043 TTTCTCGGCCATCGGATGGATCCCAAAGCC-AGCCACCATGAACGCGACCCATGAGGTTT 1101
Query 1025 ACATGATCGCTAAGGCTCAAAC-CATAATCGCT-TGTTGCAGCACCGTTCCC-GGTTACT 1081
|| ||| |||| |||||| || | || |||| | |||||| || || ||| || ||||
Sbjct 1102 TCAGGATTGCTAGGGCTCAGACTCTTA-TCGCCCT-TTGCAGTACAGT-CCCAGGCTACT 1158
Query 1082 TTTTCACTGTAGGGTTCATCGATTAT-ATGGGACGGAAAAAGATCCAGATCA-TGGG-TT 1138
||||| || | || || ||| || || ||| || ||||||| || |||| ||
Sbjct 1159 GGTTCACAGTTGCTTTTATTGAT-ATCATTGGAAGGTTTGCGATCCAGC-CAATGGGATT 1216
Query 1139 TCGCTATGATGACCATCTTCATGCT--CAGTTTAGCCATACCGTACCATCATTGGACCTT 1196
| | ||||||||| | || ||| | || || ||| | || ||| | || ||||||
Sbjct 1217 TTTC-ATGATGACCGTTTTTATGTTTGCAATT--GCCTTCCCTTACAACCACTGGACCAA 1273
Query 1197 ACCGGCTAACCGGATTGG-TTTCGTCGTTCTTTACTCTTTCACATTT-TTCTTCTCCAAT 1254
||| | ||||| || || ||| || ||| | ||| || |||| ||| |||||| |||||
Sbjct 1274 ACCAGAAAACCGTATCGGATTT-GTGGTTATGTACGCTCTCAC-TTTCTTCTTCGCCAAT 1331
Query 1255 TTTGGACCTAACGCAACTACTTTCATTGTCCCGGCTGAGATTTTCCCGGCGAGGATAAGG 1314
||||| || || ||||| ||||| |||||||||||||||||||| || || ||| |||||
Sbjct 1332 TTTGGTCCAAATGCAACCACTTTTATTGTCCCGGCTGAGATTTTTCCAGCCAGGCTAAGG 1391
Query 1315 TCGACTTGTCACGGTATATCGGCGGCGTCTGGTAA 1349
|| || ||||| || ||||| || ||| |||||||
Sbjct 1392 TCTACATGTCATGGAATATCAGCCGCGGCTGGTAA 1426
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58087623625
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5