BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G43380.1
Length=1401
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494661 jgi|Araly1|494661|fgenesh2_kg.8__477__AT5G43380.1 1940 0.0
> Ahg494661 jgi|Araly1|494661|fgenesh2_kg.8__477__AT5G43380.1
Length=1387
Score = 1940 bits (1050), Expect = 0.0
Identities = 1237/1327 (93%), Gaps = 13/1327 (1%)
Strand=Plus/Plus
Query 1 ACCATTCTTTTTCTCAAAGAGCAAGCATAAAAGAACATAAAAGCTCCATACTTTTTAAAT 60
||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |||
Sbjct 1 ACCATTCTTTTTCTCAAAGAGCAAGCATAAAAGAACATAAAAGAACCAAACTTTTTTAAT 60
Query 61 TTATTCCATATTGTCAATAGCTTTTGTATATTATAAAGCTTCTAGG---CGT-T-GTTGT 115
||||| ||||||||||||||||| ||| || |||||| |||||||| | | | |||||
Sbjct 61 TTATTTCATATTGTCAATAGCTTCTGTTTAGTATAAATCTTCTAGGTCTCTTCTCGTTGT 120
Query 116 TGTTTTGTCTCATTGTTGCTCTGTTTCTTGAGGTTTTATAAATGGATCCTGGTACTTTAA 175
||||| ||||||||||||||||||||||||||||||||| ||||||| || |||||||||
Sbjct 121 TGTTTCGTCTCATTGTTGCTCTGTTTCTTGAGGTTTTATTAATGGATGCTAGTACTTTAA 180
Query 176 ACTCGGTGATCAATAGGTTGCTTGAAGCTAGAGAAAAACCAGGAAAGATTGTTCAGTTGT 235
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 181 ACTCGGTGATCAATAGGTTGCTTGAAGCTAGAGAGAAACCAGGAAAGATTGTTCAATTGT 240
Query 236 CTGAAACAGAGATCAAACAGCTCTGTTTCGTCTCTAGAGATATCTTCTTGAGACAACCAA 295
||||||||||||| ||||||||||||||||||||||||| ||||||||| ||||| ||||
Sbjct 241 CTGAAACAGAGATTAAACAGCTCTGTTTCGTCTCTAGAGGTATCTTCTTAAGACAGCCAA 300
Query 296 ATCTCTTGGAACTTGAAGCTCCTGTTAAAATATGTGGGGACATTCATGGACAATATCCGG 355
||||||||||||| |||||||| || ||||| ||||||||||||||||||||||||||||
Sbjct 301 ATCTCTTGGAACTCGAAGCTCCAGTCAAAATCTGTGGGGACATTCATGGACAATATCCGG 360
Query 356 ATCTCTTGAGACTATTCGAACATGGCGGATACCCTCCTAATTCAAACTACTTGTTTCTTG 415
|||||||||||||||||||| | ||||||||||||||| ||||||||||||||||||||
Sbjct 361 ATCTCTTGAGACTATTCGAATACGGCGGATACCCTCCTCGTTCAAACTACTTGTTTCTTG 420
Query 416 GAGATTATGTCGATCGCGGCAAGCAAAGCCTCGAAACGATTTGTCTTTTACTTGCTTACA 475
|||||||||| |||||||||||||||||| | |||||||||||||||||||| |||||||
Sbjct 421 GAGATTATGTTGATCGCGGCAAGCAAAGCATTGAAACGATTTGTCTTTTACTCGCTTACA 480
Query 476 AGATTAAGTTCCCTGAAAACTTCTTCCTTCTCAGAGGAAACCATGAAAGTGCATCAATCA 535
|||| || |||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 481 AGATCAAATTCCCTGAAAACTTCTTCCTTCTCAGAGGAAACCATGAAAGTGCCTCAATAA 540
Query 536 ATCGTATTTACGGCTTCTATGACGAGTGTAAACGTAGATTCAGTGTCAAGATTTGGCGAA 595
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 541 ATCGCATTTACGGCTTCTATGACGAGTGTAAACGCAGATTCAGTGTCAAGATTTGGCGAA 600
Query 596 TCTTCACTGATTGCTTCAACTGTCTCCCCGTCGCTGCACTCATCGATGAGCGGATTTTTT 655
||||||| ||||||||||| ||||||||||| ||||||||||||||||| |||||| |||
Sbjct 601 TCTTCACCGATTGCTTCAATTGTCTCCCCGTGGCTGCACTCATCGATGATCGGATTCTTT 660
Query 656 GTATGCATGGTGGGCTCTCCCCGGAGCTGCTAAGCTTGAGGCAGATTAGGGATATTCGTC 715
|||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||
Sbjct 661 GTATGCATGGTGGGCTCTCCCCAGAGCTTCTTAGCTTGAGGCAGATTAGGGATATTCGTC 720
Query 716 GTCCAACGGATATTCCTGATCGTGGTTTACTCTGTGATCTCTTGTGGTCTGATCCTGATA 775
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 GTCCAACAGATATTCCTGATCGTGGTTTACTCTGTGATCTCTTGTGGTCTGATCCTGATA 780
Query 776 AAGATGTTAGAGGTTGGGGGCCTAACGATCGCGGAGTTTCTTACACTTTTGGATCAGATA 835
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 781 AAGATGTTAGAGGTTGGGGGCCTAACGATCGCGGAGTTTCTTACACTTTCGGATCGGATA 840
Query 836 TAGTTTCTGGATTTCTTAAAAGACTCGATCTTGACCTCATTTGTAGGGCTCACCAGGTTG 895
||||||||| ||||| |||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 841 CAGTTTCTGGGTTTCTCAAAAGACTTGATCTTGACCTAATTTGTAGGGCTCACCAGGTTG 900
Query 896 TTGAAGATGGATTCGAGTTCTTTGCGAATAAGCAGCTCGTAACGATATTCTCTGCGCCGA 955
||||||||||||||||||||||||||||||||||||| || |||||||| |||||||| |
Sbjct 901 TTGAAGATGGATTCGAGTTCTTTGCGAATAAGCAGCTTGTGACGATATTTTCTGCGCCAA 960
Query 956 ATTACTGTGGGGAATTTGACAATGCAGGTGCGATGATGAGTGTGT-CTGAGGATTTGACC 1014
|||||||||| ||||| ||||||||||||||||||||||||||| | || |||||||||
Sbjct 961 ATTACTGTGGAGAATTCGACAATGCAGGTGCGATGATGAGTGTGGAC-GATGATTTGACC 1019
Query 1015 TGCTCTTTTCAGATCTTAAAATCTAATGACAAGAAATCAAAGTTCAGTTTCGGAAGCAGA 1074
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1020 TGCTCTTTTCAGATCTTAAAACCTAATGACAAGAAATCAAAGTTCAGTTTCGGAAGCAGA 1079
Query 1075 GGTGGTGCTAAAACTAGCTTCCCTTATCCTAAAGTGAAGTCGATTCTGAGTTCGCAAAAT 1134
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 1080 GGTGGTGCTAAAACTAGCTTCCCTTATCCTAAAGTCAAGTCGATTCTGAGCTCGCAAAAT 1139
Query 1135 TCGAAAGAATACAACTGATGAAGATTTAAAACTCCGCATAATAACTATT-AGAAACCATG 1193
||||||||||||||||||||||| ||||||||| |||||||||||| || ||||||||||
Sbjct 1140 TCGAAAGAATACAACTGATGAAGTTTTAAAACTTCGCATAATAACTGTTTAGAAACCATG 1199
Query 1194 CCAACGTAACTCGACTACTATATGATGAGAAATTAAAGAGGATTTTGAATTTCGGAATTT 1253
||||||||||||||||| ||| ||||||||| || || ||||||||||||||||||||
Sbjct 1200 CCAACGTAACTCGACTA-TAT--GATGAGAAAGCAA-GATGATTTTGAATTTCGGAATTT 1255
Query 1254 TGGGAAGCTTCtgtttttgttatgtttt-gtgttgtctgctgctatcacttgtgtgtatg 1312
||||||||||||||||||||| |||||| ||||||||| |||| | |||||||||||||
Sbjct 1256 TGGGAAGCTTCTGTTTTTGTTTTGTTTTTGTGTTGTCTTTTGCTTTTACTTGTGTGTATG 1315
Query 1313 tgttttt 1319
| |||||
Sbjct 1316 TTTTTTT 1322
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52374086875
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5