BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G43390.1
Length=2166
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494659 jgi|Araly1|494659|fgenesh2_kg.8__475__AT5G43390.1 2715 0.0
Ahg948830 jgi|Araly1|948830|scaffold_800717.1 2124 0.0
Ahg479996 jgi|Araly1|479996|fgenesh2_kg.3__2697__AT3G24780.1 100 4e-20
Ahg319184 jgi|Araly1|319184|fgenesh1_pm.C_scaffold_3002200 100 4e-20
> Ahg494659 jgi|Araly1|494659|fgenesh2_kg.8__475__AT5G43390.1
Length=2103
Score = 2715 bits (1470), Expect = 0.0
Identities = 1921/2131 (90%), Gaps = 61/2131 (3%)
Strand=Plus/Plus
Query 69 ACCATCACCAAATCTCTCTCT-TTCAATGGCTTCTTCTTCCACTGCGATCCTTCTCGGAC 127
||||||||||||||||| ||| |||||||| ||||||||||| |||||||||| ||||
Sbjct 1 ACCATCACCAAATCTCTATCTCTTCAATGG---CTTCTTCCACTACGATCCTTCTGGGAC 57
Query 128 CACCTTCCGTCGCCGCCATGGAGACACC----A-----GTTTCCGATGACAACAGTGTAA 178
||||||||||||||||| | |||||||| | |||||||||| ||||||| | |
Sbjct 58 CACCTTCCGTCGCCGCCTTCGAGACACCAGAAACCCCTGTTTCCGATGGCAACAGTTTGA 117
Query 179 TCTCCCAAATTGCCACACTAAACCTAGAAGAACCACAGATGGGTCTGACGGAAAACTTCT 238
||||||||| ||||||||||||||| |||||||||| ||||||||||||||||||||| |
Sbjct 118 TCTCCCAAACTGCCACACTAAACCTCGAAGAACCACCGATGGGTCTGACGGAAAACTTTT 177
Query 239 CGCCCACGTTTCTAACCTCCGGGAACCCATGTCTCGATTTCTTCTTCCATATCGTCCCAG 298
|||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 178 CGCCCACGTTTCTATCCTCCGGGAACCCATGTCTCGATTTCTTCTTCCACATCGTCCCGG 237
Query 299 ACACACCTTCCGATGATCTGATCCAAAGGCTGGCCATTTCTTGGTCTCACGATCCTTTGA 358
||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 238 ACACACCTTCCGAGGATCTGATCCAAAGGCTGGCGATTTCTTGGTCTCACGATCCTTTGA 297
Query 359 CTACGTTGAAGCTCCTCTGCAATCTCAGAGGTGTTAGAGGAACTGGAAAATCAGACAAGG 418
||||||| |||||| |||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 298 CTACGTTAAAGCTCATCTGCAATCTCAGAGGAGTTAGAGGAACTGGGAAATCAGACAAGG 357
Query 419 AAGGGTTTTACACAGCTGCCTTGTGGCTTTACAAGAACCACCCAAAAACTCTAGCTTTGA 478
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 358 AAGGGTTTTACACAGCTGCCTTGTGGCTTTACAAGAATCACCCAAAAACCCTAGCTTTGA 417
Query 479 ATATCCCTACTCTTGTCGATTTTGGGTATTTCAAAGATTTACCTGAGATTCTGCTT-CGG 537
|||||||| |||| |||||||||||||||||||||||||| ||||||||||| ||| |||
Sbjct 418 ATATCCCTGCTCTCGTCGATTTTGGGTATTTCAAAGATTTGCCTGAGATTCT-CTTTCGG 476
Query 538 ATCTTGGAAGGTCAGCAGACGGAGAGAGGTAAGACTCGGGTTTGGAGGAAGAGGATTCAG 597
||||||||||||||||||| ||||||||| |||| || |||||||||||||||||||||
Sbjct 477 ATCTTGGAAGGTCAGCAGATGGAGAGAGGGAAGAAGCGTGTTTGGAGGAAGAGGATTCAG 536
Query 598 AGGAAGTTCAAAGGGGATAGTGAGAAAAAGTCTACCATATCCGGTGACATGGAAGATCGG 657
||||| |||||||||||||||||||||| | || | ||||| ||||| |||||||||||
Sbjct 537 AGGAAATTCAAAGGGGATAGTGAGAAAAGGACTGCTATATCTGGTGAAATGGAAGATCGA 596
Query 658 ATTCTCGAAACCGCGGAGGAGACTGGTGGTCCTGTTGGTAAAGTCAAGGCTAGGGCTTTA 717
||||||||||| |||||||||| |||||| ||||||| |||| |||| |||||||||||
Sbjct 597 ATTCTCGAAACAGCGGAGGAGATTGGTGGCCCTGTTGATAAAATCAAAGCTAGGGCTTTG 656
Query 718 CGGAAACAGAGAGAGTTCGAAAAGGCGAAAAAGGCTCTAGATAGGTATAACTCTGATGCT 777
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 657 CGGAAACAGAGAGAGTTCGAAAAGGCGAAAAAGGCGCTAGAGAGGTATAACTCTGATGCT 716
Query 778 AATTACAGATTACTCTTTGATCA-AATTGCCGATTTGTTTGCGGAATTATTGAAATCAGA 836
|||||||||||||| |||||| | |||||| ||||||||||| || || |||||||| ||
Sbjct 717 AATTACAGATTACTGTTTGAT-AGAATTGCGGATTTGTTTGCCGATTTGTTGAAATCGGA 775
Query 837 TTTGGAGTATTTGAATACAGA-TAATTTGAACAAGATTAGTTTAGCTTCGAAATGGTGTC 895
|||| ||| ||||||| | || | | ||||| |||||| |||||||||||||||||||||
Sbjct 776 TTTGAAGTGTTTGAATTC-GAATGAGTTGAATAAGATTGGTTTAGCTTCGAAATGGTGTC 834
Query 896 CTTCTGTTGATTCTTCGTATGATAAGACTACTTTGATATGTGAGGCTATTGCTAGAAGAA 955
||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 835 CTTCTGTCGATTCTTCGTATGATAAGACTACTTTGATATGTGAGGCGATTGCTAGAAGGA 894
Query 956 TGTT-CCTTAGAGAGGAATACGAAGAAGGTATCGAAGAAGTGCATTATGCATATAGGATT 1014
|||| ||| ||||| || || |||| | ||||||||||| ||||||||| |||||||||
Sbjct 895 TGTTTCCT-AGAGATGAGTATGAAG--G-TATCGAAGAAGCGCATTATGCGTATAGGATT 950
Query 1015 AGAGATAGGTTGAGAAAAGAAGTTCTTGTCCCGTTACATAAAGCTCTTGAGTTGCCAGAG 1074
|||||||||||||| ||||||||||| || |||||||||||||| || || || ||||||
Sbjct 951 AGAGATAGGTTGAGGAAAGAAGTTCTCGTGCCGTTACATAAAGCGCTCGAATTACCAGAG 1010
Query 1075 GTGTCTATGAGTGCCAAGGAATGGAATCTGTTGAAGTACAATAGAGTTCCTTCTATAGCC 1134
||||||||||||||||||||||||||| |||||||||||||||||||||||||| | ||
Sbjct 1011 GTGTCTATGAGTGCCAAGGAATGGAATTTGTTGAAGTACAATAGAGTTCCTTCTGTGGCT 1070
Query 1135 ATGCAGAATTATAGTTCACGCTTTGCGGAACACGATAGCGAGAGGTTCACCGAGTTTTTG 1194
||||||||||| || ||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 1071 ATGCAGAATTACAGGACACGCTTTGTGGAACACGATAACGAGAGGTTCACCGAGTTTTTG 1130
Query 1195 GAGGATGTGAAATCCGGGAAGAAGAAGATGGCGGCTGGTGCGTTGCTTCCTCATCAGATT 1254
| |||||||| ||| ||||||||||| || ||||||||||| |||||||||||||||||
Sbjct 1131 GGGGATGTGAGATCTGGGAAGAAGAAAATCGCGGCTGGTGCATTGCTTCCTCATCAGATA 1190
Query 1255 ATCAGTC-AGCTTTTGAATGATAGTGAA---G--GT-GA---AGAAGTAGCAGAGCTTCA 1304
||||| | ||||| ||||||||||||| | || | ||||||||||||||||||
Sbjct 1191 ATCAG-CGAGCTTGAGAATGATAGTGAAAATGAAGTTGGTGCAGAAGTAGCAGAGCTTCA 1249
Query 1305 ATGGGCGAGAATGGTTGATGATCTTGCCAAGAAAGGGAAGTTGAAGAACTCATTGGCGAT 1364
|||||| |||||||| ||||||||||||||||||||||| |||| ||| |||||||||||
Sbjct 1250 ATGGGCAAGAATGGTGGATGATCTTGCCAAGAAAGGGAAATTGACGAATTCATTGGCGAT 1309
Query 1365 TTGTGATGTCTCGGGAAGCATGGCTGGTACACCTATGAATGTTTGTATTGCGTTAGGGTT 1424
|||||||||||||||||||||||||||||||||||||||||||||| | || | |||||
Sbjct 1310 TTGTGATGTCTCGGGAAGCATGGCTGGTACACCTATGAATGTTTGTGTAGCACTCGGGTT 1369
Query 1425 ATTGGTTTCGGAACTTAATGAAGAGCCGTGGAAAGGGAAAGTTATCACTTTTAGCGAAAA 1484
||||||||| |||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 1370 ATTGGTTTCAGAACTTAACGAAGAGCCGTGGAAAGGGAAAGTTATCACCTTTAGCGAAAA 1429
Query 1485 CCCGCAGCTTCATGTTGTCACGGGTTCGAGTCTGAGAGAGAAGACTAAGTTTGTTAGAGA 1544
||||||||||||||| ||||||||||||||||||||||| |||||| ||||||| ||||
Sbjct 1430 CCCGCAGCTTCATGTAGTCACGGGTTCGAGTCTGAGAGAAAAGACTCAGTTTGTCAGAGC 1489
Query 1545 AATGGATTTTGGAATCAACACAGATTTCCAGAAGGTGTTTGATCGGATTCTAGAGGTTGC 1604
|||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1490 AATGGATTGGGGAATGAACACAGATTTTCAGAAGGTGTTTGATCGGATTCTAGAGGTTGC 1549
Query 1605 TGTCGAGAATAACTTAACCGATGAACAGATGATCAAGCGGTTGTTTGTGTTCAGTGACAT 1664
|||||||||||||||||| |||| ||||||||||||||||||||||||||||| |||||
Sbjct 1550 AGTCGAGAATAACTTAACCAATGACCAGATGATCAAGCGGTTGTTTGTGTTCAGCGACAT 1609
Query 1665 GGAGTTTGATGATGCAAGAGTA---GACAGCCATTCGGAAATGAGTGACTACGCGAGTAA 1721
|||||||||||||||||||||| ||||||||||||||| |||||||||||| ||||||
Sbjct 1610 GGAGTTTGATGATGCAAGAGTAAAAGACAGCCATTCGGAAGTGAGTGACTACGAGAGTAA 1669
Query 1722 CTTGGAGAGTGACTACGAGAGTGTC-CCGGAGAGTTTTGAGAAATGGGAGACGGATTATG 1780
|| ||||||||||| ||||||||| ||| ||||||||||||||||||||||||| ||||
Sbjct 1670 CTCCGAGAGTGACTATGAGAGTGTCTCCG-AGAGTTTTGAGAAATGGGAGACGGACTATG 1728
Query 1781 AAGTTGTTCAGAGGAAGTATAAAGAGAAGGGTTTTCAGAATGTTCCTGAAATTGTATTTT 1840
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1729 AAGTTGTTCAGAGAAAGTATAAAGAGAAGGGTTTTCAGAATGTTCCTGAAATTGTATTTT 1788
Query 1841 GGAACTTAAGAGACTCGTCAGCTACACCCGTGGTGTCTAAGCAGAAAGGTGTAGCTATGG 1900
||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct 1789 GGAACTTAAGAGACTCGTCAGCTACACCCGTGGCGTCTAAGCAGAAAGGAGTAGCTATGG 1848
Query 1901 TTAGCGGGTTTTCGAAGAATCTACTGACTCTGTTTCTTGAGGAAGGTGGGATTGTGAATC 1960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1849 TTAGCGGGTTTTCGAAGAATCTACTGACTCTGTTTCTTGAGGAAGGTGGGATTGTGAATC 1908
Query 1961 CTGAAGATGTCATGTTGTTAGCCATTAAAGGTGAGGAGTATCAGAAGCTTGCTGTTTATG 2020
||||||||||||||| |||||||||||||||||| |||||| ||||||| ||||||||||
Sbjct 1909 CTGAAGATGTCATGTGGTTAGCCATTAAAGGTGATGAGTATAAGAAGCTAGCTGTTTATG 1968
Query 2021 ACTGAGAAGTTTTATTCA-TTTAAATATTGGATTTTG-TG--AGTACATGAATGAATCTT 2076
||||||| || | || ||| | || |||||| || || |||||||||||||||
Sbjct 1969 ACTGAGATCCTTAAG-CAGTTTTT-T-TTC-ATTTTGATGTGAGGACATGAATGAATCTT 2024
Query 2077 GTTTAAGttttttttttttttCTAAGTACCTATGTCTAATAAGATACAGCTAAGAAAATG 2136
||||| | |||||||| | ||| || ||||||| ||||| |||||||||||||
Sbjct 2025 GTTTATGATTTTTTTT-------A--TAC-TAAGTCTAATTAGATATAGCTAAGAAAATG 2074
Query 2137 AAA-TGATCTATAGAAGTCATAAGATGAGGC 2166
||| ||||||| |||||||||||| |||||
Sbjct 2075 AAAATGATCTA--GAAGTCATAAGAGGAGGC 2103
> Ahg948830 jgi|Araly1|948830|scaffold_800717.1
Length=2014
Score = 2124 bits (1150), Expect = 0.0
Identities = 1668/1913 (87%), Gaps = 55/1913 (3%)
Strand=Plus/Plus
Query 147 GGAGACACCAGTTTCCGATGACAACAGTGTAATCTCCCAAATTGCCACACTAAACCTAGA 206
||| || |||||||||||||| |||||| |||||||||||| |||||||||||||| ||
Sbjct 107 GGAAACCCCAGTTTCCGATGAAAACAGTTTAATCTCCCAAACCGCCACACTAAACCTTGA 166
Query 207 AGAACCA-CA--GATGGGTCTGACGGAAAACTTCTCGCCCACGTTTCTAACCTCCGGGAA 263
||||||| || |||||||| || |||||||||||||| |||||||| ||||||||||
Sbjct 167 AGAACCACCACCAATGGGTCTAACTGAAAACTTCTCGCCGACGTTTCTTTCCTCCGGGAA 226
Query 264 CCCATGTCTCGATTTCTTCTTCCATATCGTCCCAGACACACCTTCCGATGATCTGATCCA 323
|||||||||||||||||||||||| |||||||| || ||| || |||||||||||||| |
Sbjct 227 CCCATGTCTCGATTTCTTCTTCCACATCGTCCCCGATACATCTCCCGATGATCTGATCAA 286
Query 324 AAGGCTGGCCATTTCTTGGTCTCACGATCCTTTGACTACGTTGAAGCTCCTCTGCAATCT 383
|||| | || ||||||||||||||||||||||||||||||||||| || | ||||||||
Sbjct 287 AAGGTTAGCTATTTCTTGGTCTCACGATCCTTTGACTACGTTGAAACTTGTATGCAATCT 346
Query 384 CAGAGGTGTTAGAGGAACTGGAAAATCAGACAAGGAAGGGTTTTACACAGCTGCCTTGTG 443
|||||| |||||||||||||| ||||||||||| |||||||||||||||||||| || ||
Sbjct 347 CAGAGGAGTTAGAGGAACTGGGAAATCAGACAAAGAAGGGTTTTACACAGCTGCGTTTTG 406
Query 444 GCTTTACAAGAACCACCCAAAAACTCTAGCTTTGAATATCCCTACTCTTGTCGATTTTGG 503
||||| |||||| || ||||| || |||||||||||| ||||| ||||||| ||||||||
Sbjct 407 GCTTTTCAAGAATCATCCAAAGACCCTAGCTTTGAATGTCCCTGCTCTTGTTGATTTTGG 466
Query 504 GTATTTCAAAGATTTACCTGAGATTCTGCTTCGGATCTTGGAAGGTCAGCAGACGGAGAG 563
||||||||||||||| |||||||||||| |||||||||||||||||||||||| ||||||
Sbjct 467 GTATTTCAAAGATTTGCCTGAGATTCTGTTTCGGATCTTGGAAGGTCAGCAGATGGAGAG 526
Query 564 AGGTAAGACTCGGGTTTGGAGGAAGAGGATTCAGAGGAAGTTCAAAGGGGATAGTGAGAA 623
||| |||| ||||||||||||||||||| |||| ||||| ||||||||| | ||||||||
Sbjct 527 AGGGAAGAGTCGGGTTTGGAGGAAGAGGGTTCAAAGGAAATTCAAAGGGAAGAGTGAGAA 586
Query 624 AA-AGTCTACCATATCCGGTGACATGGAAGATCGGATTCTCGAAACCGCGGAGGAGACTG 682
|| | | | || |||||||||||||||||||||||||| |||| | ||||||| ||
Sbjct 587 AAGGGACGA-GATTTCCGGTGACATGGAAGATCGGATTCTGGAAAATGTAGAGGAGATTG 645
Query 683 GTGGTCCTGTTGGTAAAGTCAAGGCTAGGGCTTTACGGAAACAGAGAGAGTTCGAAAAGG 742
||||| |||||| ||| || |||||||||| |||||||||||||||||||||||||||||
Sbjct 646 GTGGTTCTGTTGATAAGGTAAAGGCTAGGGGTTTACGGAAACAGAGAGAGTTCGAAAAGG 705
Query 743 CGAAAAAGGCTCTAGATAGGTATAACTCTGATGCTAATTACAGATTACTCTTTGATCAAA 802
|||||||||| ||||| |||| |||||||||||||||||| |||||||| ||||||| ||
Sbjct 706 CGAAAAAGGCGCTAGAGAGGTTTAACTCTGATGCTAATTATAGATTACTGTTTGATCGAA 765
Query 803 TTGCCGATTTGTTTGCGGAATTA--TTGAAATCAGATTTGGAGTATTTGAATACAG-ATA 859
|||| ||||||||||||| ||| |||||||| |||||| ||| ||||||| | | ||
Sbjct 766 TTGCGGATTTGTTTGCGG--TTATGTTGAAATCGGATTTGAAGTGTTTGAATTC-GAATG 822
Query 860 ATTTGAACAAGATTAGTTTAGCTTCGAAATGGTGTCCTTCTGTTGATTCTTCGTATGATA 919
| ||||| |||||| ||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 823 AGTTGAATAAGATTGGTTTAGCTTCGAAGTGGTGTCCTTCTGTTGATTCTTCGTATGATA 882
Query 920 AGACTACTTTGATATGTGAGGCTATTGCTAGAAGAATGTTCCTTAGAGAGGAATACGAAG 979
|||||||||||||||||||||| ||||||||||| ||||||| ||||||||||||| |||
Sbjct 883 AGACTACTTTGATATGTGAGGCAATTGCTAGAAGGATGTTCCCTAGAGAGGAATACAAAG 942
Query 980 AAGGTATCGAAGAAGTGCATTATGCATATAGGATTAGAGATAGGTTGAGAAAAGAAGTTC 1039
| ||| ||||| | ||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 943 A---TATAGAAGAGGCGCATTATGCGTATAGGATTAGAGATAGGTTGAGGAAAGAAGTTC 999
Query 1040 TTGTCCCGTTACATAAAGCTCTTGAGTTGCCAGAGGTGT-CTATGAGTGCCAAGGAATGG 1098
|||| ||||| |||||||| |||||||| || ||| ||| | |||||||| |||||||||
Sbjct 1000 TTGTGCCGTTGCATAAAGCGCTTGAGTTTCCGGAGTTGTTC-ATGAGTGCAAAGGAATGG 1058
Query 1099 AATCTGTTGAAGTACAATAGAGTTCCTTCTATAGCCATGCAGAATTATA-GTTCACGCT- 1156
||| |||||||||| ||||||||||||||| | || ||| ||||||| | | | |||
Sbjct 1059 AATTTGTTGAAGTATAATAGAGTTCCTTCTGTGGCTATGAAGAATTACAAGA--A-GCTG 1115
Query 1157 TT-GCGGAACACGATAGCGAGAGGTT--CACCGAGTTTTTGGAGGATGTGAAATCCGGGA 1213
|| | |||||| |||||||||||||| ||| ||||||||||||||||||| || ||||
Sbjct 1116 TTTGAGGAACATGATAGCGAGAGGTTTTCAC--AGTTTTTGGAGGATGTGAAGTCTGGGA 1173
Query 1214 AGAAGAAGATGGCGGCTGGTGCGTTGCTTCCTCATCAGATTATCA-GTCAGCTTTTGAAT 1272
|||||||||| ||||||||||||||||||||||||||||| |||| | ||||| | ||
Sbjct 1174 AGAAGAAGATTGCGGCTGGTGCGTTGCTTCCTCATCAGATAATCAAG-CAGCTGGAGGAT 1232
Query 1273 GA---T---AGTGAAGGTGAAG---AAGTAGCAGAGCTTCAATGGGCGAGAATGGTTGAT 1323
|| | ||||||| || | |||| ||||||||||||||||||||||||||||||
Sbjct 1233 GAGAGTGGGAGTGAAGTTGGCGCGGAAGTTGCAGAGCTTCAATGGGCGAGAATGGTTGAT 1292
Query 1324 GATCTTGCCAAGAAAGGGAAGTTGAAGAACTCATTGGCGATTTGTGATGTCTCGGGAAGC 1383
|||||||| |||||||||||| ||||||| ||||||||| ||||||||||||| |||||
Sbjct 1293 GATCTTGCTAAGAAAGGGAAGCTGAAGAATTCATTGGCGGTTTGTGATGTCTCTGGAAGT 1352
Query 1384 ATGGCTGGTACACCTATGAATGTTTGTATTGCGTTAGGGTTATTGGTTTCGGAACTTAAT 1443
||| | ||||| |||||| | |||||| | ||| | ||||||||||||||||||||||||
Sbjct 1353 ATGTCGGGTACGCCTATGGAGGTTTGTGTAGCGCTCGGGTTATTGGTTTCGGAACTTAAT 1412
Query 1444 GAAGAGCCGTGGAAAGGGAAAGTTATCACTTTTAGCGAAAACCCGCAGCTT-CATGTTGT 1502
||||||||||||||||||||||||||||| |||||||||||||||||| || || ||||
Sbjct 1413 GAAGAGCCGTGGAAAGGGAAAGTTATCACCTTTAGCGAAAACCCGCAG-TTGCACATTGT 1471
Query 1503 CACGGGTTCGAGTCTGAGAGAGAAGACTAAGTTTGTTAGAGAAATGGATTTTGGAATCAA 1562
||||||| ||||||||||||| |||||| ||||||| || |||||||||| ||||| ||
Sbjct 1472 CACGGGTGCGAGTCTGAGAGAAAAGACTGAGTTTGTCAGGGAAATGGATTGGGGAATGAA 1531
Query 1563 CACAGATTTCCAGAAGGTGTTTGATCGGATTCTAGAGGTTGCTGTCGAGAATAACTTAAC 1622
||| ||||| |||||||| |||||||| |||||||| ||||| |||||||||||||||||
Sbjct 1532 CACGGATTTTCAGAAGGTATTTGATCGTATTCTAGAAGTTGCAGTCGAGAATAACTTAAC 1591
Query 1623 CGATGAACAGATGATCAAGCGGTTGTTTGTGTTCAGTGACATGGAGTTTGATGATGCAA- 1681
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1592 CGATGAGCAGATGATCAAGCGGTTGTTTGTGTTCAGTGACATGGAGTTTGATGATGCAAT 1651
Query 1682 GAGTAGACAGCCATTCGGAAATGAGTGACTACG-C-GAGTAACTTGGAG-AGTGACT-AC 1737
| | | |||||||||| || ||||| || || | |||| | |||| | | | |
Sbjct 1652 G-GCAAACAGCCATTCAGAGGTGAGTTAC--CGTCTGAGTG--T-GGAGGACCGGTTGAA 1705
Query 1738 GAGAGTGTCCCGGA-GAGTTTT-G-AGAAATGGGAGACGGATTATGAAGTTGTTCAGAGG 1794
|| | | | | || | | ||||||||||||| |||||||| || |||||||||
Sbjct 1706 GATAAAGAAGCA-ACGA-TCCAAGGAGAAATGGGAGACAGATTATGAGGTGGTTCAGAGG 1763
Query 1795 AAGTATAAAGAGAAGGGTTTTCAGAATGTTCCTGAAATTGTATTTTGGAACTTAAGAGAC 1854
|||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 1764 AAGTATAAGGAGAAGGGTTTTCAGAATGTTCCAGAAATGGTATTTTGGAACTTAAGAGAC 1823
Query 1855 TCGTCAGCTACACCCGTGGTGTCTAAGCAGAAAGGTGTAGCTATGGTTAGCGGGTTTTCG 1914
|| || ||||||||||||||| |||| |||||||| ||||||||||||||||||||||||
Sbjct 1824 TCATCGGCTACACCCGTGGTGGCTAACCAGAAAGGAGTAGCTATGGTTAGCGGGTTTTCG 1883
Query 1915 AAGAATCTACTGACTCTGTTTCTTGAGGAAGGTGGGATTGTGAATCCTGAAGATGTCATG 1974
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1884 AAGAATCTACTGACTCTGTTTCTTGAGGAAGGTGGGATTGTGCATCCTGAAGATGTCATG 1943
Query 1975 TTGTTAGCCATTAAAGGTGAGGAGTATCAGAAGCTTGCTGTTTATGACTGAGA 2027
| ||||||||| ||||||||||||||| ||||||||| |||||||||||||||
Sbjct 1944 TGGTTAGCCATCAAAGGTGAGGAGTATAAGAAGCTTGTTGTTTATGACTGAGA 1996
> Ahg479996 jgi|Araly1|479996|fgenesh2_kg.3__2697__AT3G24780.1
Length=2193
Score = 100 bits (54), Expect = 4e-20
Identities = 187/246 (76%), Gaps = 30/246 (12%)
Strand=Plus/Plus
Query 1444 GAAGAGCCGTGGAAAGGGAAAG-TTATCACTTTTAGCGAAAACCC-GCAGCTT-CATGTT 1500
|||||||| |||||| |||||| |||| || || ||| ||||||| | | || ||| ||
Sbjct 1639 GAAGAGCCATGGAAA-GGAAAGCTTATAACATTCAGCAAAAACCCTG-A-ATTGCAT-TT 1694
Query 1501 -GT-CACGG-GTTCGAGTCTGAGA-GAGAAGACTAAGTTT-GTTAGAGAA-ATGGATTTT 1554
|| | || | ||| | ||||| | || || |||||| | | ||||| ||||| |
Sbjct 1695 GGTGAAAGGAG-ACGA-TTTGAGATCA-AAAAC-AAGTTTCG-TGGAGAATATGGA-ATG 1748
Query 1555 GGA-ATCAACACAGATTTCCAGAAGGTGTTTGATCGGATTC-TAGAGGTTGCTGTCGAGA 1612
||| || ||||| ||||| ||||| ||||||||| ||||| || | || || || |||
Sbjct 1749 GGATATGAACACTGATTTTCAGAAAGTGTTTGATTTGATTCTTA-AAGTGGCCGT--AGA 1805
Query 1613 A--TAA-CTTAA-CCGATGAACAGATGATCAAGCGGTTGTTTGTGTTCAGTGACATGGAG 1668
| || || || || | ||| ||||||||||| || |||||||||||||||||||||||
Sbjct 1806 AGGGAAGCTGAAGCC-A-GAAGAGATGATCAAGAGGGTGTTTGTGTTCAGTGACATGGAG 1863
Query 1669 TTTGAT 1674
||||||
Sbjct 1864 TTTGAT 1869
> Ahg319184 jgi|Araly1|319184|fgenesh1_pm.C_scaffold_3002200
Length=1932
Score = 100 bits (54), Expect = 4e-20
Identities = 186/245 (76%), Gaps = 28/245 (11%)
Strand=Plus/Plus
Query 1444 GAAGAGCCGTGGAAAGGGAAAG-TTATCACTTTTAGCGAAAACCC-GCAGCTTCATGTT- 1500
|||||||| |||| | |||||| |||| || || ||||||||||| | | || ||| ||
Sbjct 1378 GAAGAGCCATGGAGA-GGAAAGCTTATAACATTCAGCGAAAACCCTG-AACTGCAT-TTG 1434
Query 1501 GTCAC-GG-GTTCGAGTCTGA-GAGAGAAGACTA-AGTTTGTTAGAGAA-ATGGATTTTG 1555
|| || || | ||| | ||| | | || || | ||||||| || ||| ||||| | |
Sbjct 1435 GTGACAGGAG-ACGA-TTTGAGGTCA-AAAAC-AGAGTTTGTGAG-GAATATGGA-ATGG 1488
Query 1556 GA-ATCAACACAGATTTCCAGAAGGTGTTTGATCGGATTCTAGAG-GTTGCTGTCGAGAA 1613
|| || ||||| ||||| ||||| ||||||||| |||||| ||| || || || ||||
Sbjct 1489 GATATGAACACTGATTTTCAGAAAGTGTTTGATTTGATTCT-GAGAGTCGCCGT--AGAA 1545
Query 1614 --TAA-CTTA-ACCGATGAACAGATGATCAAGCGGTTGTTTGTGTTCAGTGACATGGAGT 1669
|| |||| ||| || | ||||||||| || ||||||||||||||||||||||||
Sbjct 1546 GGGAAGCTTAGGCCG--CAAGATATGATCAAGAGGGTGTTTGTGTTCAGTGACATGGAGT 1603
Query 1670 TTGAT 1674
|||||
Sbjct 1604 TTGAT 1608
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81513124300
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5