BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G43400.1
Length=2280
Score E
Sequences producing significant alignments: (Bits) Value
Ahg948830 jgi|Araly1|948830|scaffold_800717.1 3016 0.0
Ahg494659 jgi|Araly1|494659|fgenesh2_kg.8__475__AT5G43390.1 2320 0.0
> Ahg948830 jgi|Araly1|948830|scaffold_800717.1
Length=2014
Score = 3016 bits (1633), Expect = 0.0
Identities = 1895/2021 (94%), Gaps = 19/2021 (1%)
Strand=Plus/Plus
Query 54 ATCGCATTTTCCTCTGTTTCAATGGCTTCTTCCACTACGATCCTTCTTGGTCCACCTTCC 113
||||| | ||||||||||||||||||||||||||| |||| ||||||||| |||||||||
Sbjct 1 ATCGC-TCTTCCTCTGTTTCAATGGCTTCTTCCACGACGACCCTTCTTGGCCCACCTTCC 59
Query 114 GTCGCCGGAAATTCACCGATCATCAAA-C---CA--ATCCATTCACCGGAAA-CCCATAT 166
||| |||| |||||| |||| | ||| | || |||||||||||||||| |||| |
Sbjct 60 GTCACCGGCGATTCACAGATCTTGAAACCAGTCACCATCCATTCACCGGAAACCCCA-GT 118
Query 167 TTCCGATGAAAACACTCTAATCTCCCAAACCGCTACACTAAACCTCGAAGAACCACCACC 226
|||||||||||||| | |||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 119 TTCCGATGAAAACAGTTTAATCTCCCAAACCGCCACACTAAACCTTGAAGAACCACCACC 178
Query 227 AATGGGTCTAACGGAGAATTTCTCGCCGACATTTCTCTCCTCCGGGAACCCATGTCTCGA 286
|||||||||||| || || ||||||||||| ||||| |||||||||||||||||||||||
Sbjct 179 AATGGGTCTAACTGAAAACTTCTCGCCGACGTTTCTTTCCTCCGGGAACCCATGTCTCGA 238
Query 287 TTTCTTCTTCCACATCGTCCCCGACACATCTCCCGATGATCTGATCCAAAGGCTAGCAAT 346
|||||||||||||||||||||||| ||||||||||||||||||||| ||||| |||| ||
Sbjct 239 TTTCTTCTTCCACATCGTCCCCGATACATCTCCCGATGATCTGATCAAAAGGTTAGCTAT 298
Query 347 TTCTTGGTCTCACGATCCGTTGACTACGTTGAAGCTTATCTGCAATCTCAGAGGTGTTAG 406
|||||||||||||||||| |||||||||||||| ||| | |||||||||||||| |||||
Sbjct 299 TTCTTGGTCTCACGATCCTTTGACTACGTTGAAACTTGTATGCAATCTCAGAGGAGTTAG 358
Query 407 AGGAACTGGGAAATCAGACAAAGAAGGGTTTTACACAGCTGCTTTTTGGCTTTACAAGAA 466
|||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct 359 AGGAACTGGGAAATCAGACAAAGAAGGGTTTTACACAGCTGCGTTTTGGCTTTTCAAGAA 418
Query 467 TCATCCAAAAACCCTAGCTTTGAATGTCCCTGCTCTCGTTGATTTTGGGTATTTCAAAGA 526
||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 419 TCATCCAAAGACCCTAGCTTTGAATGTCCCTGCTCTTGTTGATTTTGGGTATTTCAAAGA 478
Query 527 TCTGCCTGAGATTCTGTTTCGGATCTTGGAAGGTCAGAATATGGAGAGAGGGAAGAATCG 586
| ||||||||||||||||||||||||||||||||||| | |||||||||||||||| |||
Sbjct 479 TTTGCCTGAGATTCTGTTTCGGATCTTGGAAGGTCAGCAGATGGAGAGAGGGAAGAGTCG 538
Query 587 GGTTTGGAGGAAGAGGGTTCAAAGGAAATTCAAAGGGAAGAGAGAGAAAA-AGTCTGAGA 645
|||||||||||||||||||||||||||||||||||||||||| ||||||| | | ||||
Sbjct 539 GGTTTGGAGGAAGAGGGTTCAAAGGAAATTCAAAGGGAAGAGTGAGAAAAGGGAC-GAGA 597
Query 646 TTTCCGGTGAAATGGAAGATCGGATTCTGGAAAATGCGGAGGAGATTGGTGGTTCTGTTG 705
|||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 598 TTTCCGGTGACATGGAAGATCGGATTCTGGAAAATGTAGAGGAGATTGGTGGTTCTGTTG 657
Query 706 ATAAGGTAAAGGCTAGAGCTTTAAGGAAACAGAGAGAGTTCGAAAAGGCGAAAAAGGCGG 765
|||||||||||||||| | |||| |||||||||||||||||||||||||||||||||||
Sbjct 658 ATAAGGTAAAGGCTAGGGGTTTACGGAAACAGAGAGAGTTCGAAAAGGCGAAAAAGGCGC 717
Query 766 TA-ACGAGGTATAACTCTGATGCTAATTACAGATTACTGTTTGATAGAATTGCGGATTTG 824
|| | ||||| |||||||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct 718 TAGA-GAGGTTTAACTCTGATGCTAATTATAGATTACTGTTTGATCGAATTGCGGATTTG 776
Query 825 TTTGCGGTTTTGTTGAAATCGGATTTGAAGTATTTGAATTCGAATGGGTTGACTAAGATT 884
||||||||| ||||||||||||||||||||| |||||||||||||| ||||| |||||||
Sbjct 777 TTTGCGGTTATGTTGAAATCGGATTTGAAGTGTTTGAATTCGAATGAGTTGAATAAGATT 836
Query 885 AGTTTAGCTTCGAAATGGTGTCCTTCGGTTGATTCTTCGTATGATAAGGCTACTTTGATA 944
||||||||||||| ||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct 837 GGTTTAGCTTCGAAGTGGTGTCCTTCTGTTGATTCTTCGTATGATAAGACTACTTTGATA 896
Query 945 TGTGAGGCAATTGCTAGAAGGATGTTTCCTAGAGAGGAGTATGAAGGTATCGAAGAAGCG 1004
|||||||||||||||||||||||||| ||||||||||| || ||| ||| ||||| |||
Sbjct 897 TGTGAGGCAATTGCTAGAAGGATGTTCCCTAGAGAGGAATACAAAGATATAGAAGAGGCG 956
Query 1005 CATTATGCGTATAGGATTAGAGATAGGTTGAGGAAAGAAGTTCTTGTGCCGTTGCATAAA 1064
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 957 CATTATGCGTATAGGATTAGAGATAGGTTGAGGAAAGAAGTTCTTGTGCCGTTGCATAAA 1016
Query 1065 GCGCTTGAGTTTCCGGAGTTGTTCATGAGTGCTAAGGAATGGAATTTGTTGAAGTATAAT 1124
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1017 GCGCTTGAGTTTCCGGAGTTGTTCATGAGTGCAAAGGAATGGAATTTGTTGAAGTATAAT 1076
Query 1125 AGAGTTCCTTCTGTTGCTATGAAGAATTACAAGAAGCTGTTTGAGGAACATGATAGCGAG 1184
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1077 AGAGTTCCTTCTGTGGCTATGAAGAATTACAAGAAGCTGTTTGAGGAACATGATAGCGAG 1136
Query 1185 AGGTTTAC-CGAGTTTTTGGAGGATGTGAAGTCCGGAAAGAAGAAGATTGCGGCTGGTGC 1243
|||||| | | |||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 1137 AGGTTTTCAC-AGTTTTTGGAGGATGTGAAGTCTGGGAAGAAGAAGATTGCGGCTGGTGC 1195
Query 1244 GTTGCTTCCTCATCAGATAATCAACCAGCTGGAGGATGATAGTGGGAGTGAAGTTGGTGC 1303
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||
Sbjct 1196 GTTGCTTCCTCATCAGATAATCAAGCAGCTGGAGGATGAGAGTGGGAGTGAAGTTGGCGC 1255
Query 1304 GGAAGTTGCAGAACTTCAATGGGCGAGAATGGTTGATGATCTTGCTAAGAAAGGGAAGCT 1363
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1256 GGAAGTTGCAGAGCTTCAATGGGCGAGAATGGTTGATGATCTTGCTAAGAAAGGGAAGCT 1315
Query 1364 TAAGAATTCACTGGCGGTTTGTGATGTCTCTGGAAGTATGTCTGGTACACCTATGGAGGT 1423
||||||||| ||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 1316 GAAGAATTCATTGGCGGTTTGTGATGTCTCTGGAAGTATGTCGGGTACGCCTATGGAGGT 1375
Query 1424 TTGTGTAGCGCTCGGGTTACTGGTTTCGGAGCTTAGTGAAGAGCCGTGGAAAGGGAAAGT 1483
||||||||||||||||||| |||||||||| |||| ||||||||||||||||||||||||
Sbjct 1376 TTGTGTAGCGCTCGGGTTATTGGTTTCGGAACTTAATGAAGAGCCGTGGAAAGGGAAAGT 1435
Query 1484 TATCACCTTTAGCGAAAACCCGGAGCTGCATATTGTCACGGGTTCGAGTCTGAGAGAAAA 1543
|||||||||||||||||||||| || |||| |||||||||||| ||||||||||||||||
Sbjct 1436 TATCACCTTTAGCGAAAACCCGCAGTTGCACATTGTCACGGGTGCGAGTCTGAGAGAAAA 1495
Query 1544 GACTCAGTTTGTTAGAGAAATGGAATGGGGAATGAACACGGATTTTCAGATAG-TGTTTG 1602
|||| ||||||| || |||||||| ||||||||||||||||||||||||| || | ||||
Sbjct 1496 GACTGAGTTTGTCAGGGAAATGGATTGGGGAATGAACACGGATTTTCAGA-AGGTATTTG 1554
Query 1603 ATCGTATTCTAGAAGTTGCAGTCGAGAATAACTTAACCGATGACCAGATGATCAAGCGGT 1662
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1555 ATCGTATTCTAGAAGTTGCAGTCGAGAATAACTTAACCGATGAGCAGATGATCAAGCGGT 1614
Query 1663 TGTTTGTGTTCAGCGACATGGAGTTTGATGATGCAATGGCAAACAGCCATTCGGAGGTGA 1722
||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1615 TGTTTGTGTTCAGTGACATGGAGTTTGATGATGCAATGGCAAACAGCCATTCAGAGGTGA 1674
Query 1723 GTTACCATCTGAGTGTGGAGGACCGATTGAAGATATCGAAGGAACGGTCCAAGGAGAAAT 1782
|||||| |||||||||||||||||| ||||||||| |||| |||| |||||||||||||
Sbjct 1675 GTTACCGTCTGAGTGTGGAGGACCGGTTGAAGATAAAGAAGCAACGATCCAAGGAGAAAT 1734
Query 1783 GGGAGACAGATTATGAGGTGGTTCAGAGGAAGTATAAAGAGAAGGGTTTTCAGAATGTTC 1842
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1735 GGGAGACAGATTATGAGGTGGTTCAGAGGAAGTATAAGGAGAAGGGTTTTCAGAATGTTC 1794
Query 1843 CAGAAATGGTATTTTGGAACTTAAGAGACTCATCGGCTACTCCGGTGGTTGCTAACCAGA 1902
|||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||
Sbjct 1795 CAGAAATGGTATTTTGGAACTTAAGAGACTCATCGGCTACACCCGTGGTGGCTAACCAGA 1854
Query 1903 AAGGAGTAGCTATGGTTAGCGGGTTTTCGAAGAATCTACTGACTCTGTTTCTTGAAGAAG 1962
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1855 AAGGAGTAGCTATGGTTAGCGGGTTTTCGAAGAATCTACTGACTCTGTTTCTTGAGGAAG 1914
Query 1963 GTGGGATCGTGAATCCTGAAGATGTCATGTGGATT-GCCATCAAAGGTGAGGAGTATAAG 2021
||||||| ||| |||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 1915 GTGGGATTGTGCATCCTGAAGATGTCATGTGG-TTAGCCATCAAAGGTGAGGAGTATAAG 1973
Query 2022 AAGCTTGTTGTTTTTGACTGAGATACACATACACAAGCTTC 2062
||||||||||||| |||||||||||||||||||||||||||
Sbjct 1974 AAGCTTGTTGTTTATGACTGAGATACACATACACAAGCTTC 2014
> Ahg494659 jgi|Araly1|494659|fgenesh2_kg.8__475__AT5G43390.1
Length=2103
Score = 2320 bits (1256), Expect = 0.0
Identities = 1707/1920 (89%), Gaps = 50/1920 (3%)
Strand=Plus/Plus
Query 151 CACCGGAAACCCATATTTCCGATGAAAACACTCTAATCTCCCAAACCGCTACACTAAACC 210
|||| ||||||| | ||||||||| |||| | | ||||||||||| || ||||||||||
Sbjct 82 CACCAGAAACCCCTGTTTCCGATGGCAACAGTTTGATCTCCCAAACTGCCACACTAAACC 141
Query 211 TCGAAGAACCACCACCAATGGGTCTAACGGAGAA-TTTCTCGCCGACATTTCTCTCCTCC 269
|||||| | |||||| |||||||| ||||| || ||| ||||| || ||||| ||||||
Sbjct 142 TCGAAG-A--ACCACCGATGGGTCTGACGGAAAACTTT-TCGCCCACGTTTCTATCCTCC 197
Query 270 GGGAACCCATGTCTCGATTTCTTCTTCCACATCGTCCCCGACACATCTCCCGATGATCTG 329
|||||||||||||||||||||||||||||||||||||| |||||| || |||| ||||||
Sbjct 198 GGGAACCCATGTCTCGATTTCTTCTTCCACATCGTCCCGGACACACCTTCCGAGGATCTG 257
Query 330 ATCCAAAGGCTAGCAATTTCTTGGTCTCACGATCCGTTGACTACGTTGAAGCTTATCTGC 389
||||||||||| || |||||||||||||||||||| ||||||||||| ||||| ||||||
Sbjct 258 ATCCAAAGGCTGGCGATTTCTTGGTCTCACGATCCTTTGACTACGTTAAAGCTCATCTGC 317
Query 390 AATCTCAGAGGTGTTAGAGGAACTGGGAAATCAGACAAAGAAGGGTTTTACACAGCTGCT 449
||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 318 AATCTCAGAGGAGTTAGAGGAACTGGGAAATCAGACAAGGAAGGGTTTTACACAGCTGCC 377
Query 450 TTTTGGCTTTACAAGAATCATCCAAAAACCCTAGCTTTGAATGTCCCTGCTCTCGTTGAT 509
|| ||||||||||||||||| ||||||||||||||||||||| ||||||||||||| |||
Sbjct 378 TTGTGGCTTTACAAGAATCACCCAAAAACCCTAGCTTTGAATATCCCTGCTCTCGTCGAT 437
Query 510 TTTGGGTATTTCAAAGATCTGCCTGAGATTCTGTTTCGGATCTTGGAAGGTCAGAATATG 569
|||||||||||||||||| ||||||||||||| ||||||||||||||||||||| | |||
Sbjct 438 TTTGGGTATTTCAAAGATTTGCCTGAGATTCTCTTTCGGATCTTGGAAGGTCAGCAGATG 497
Query 570 GAGAGAGGGAAGAATCGGGTTTGGAGGAAGAGGGTTCAAAGGAAATTCAAAGGGAAGAGA 629
|||||||||||||| || ||||||||||||||| |||| ||||||||||||||| | ||
Sbjct 498 GAGAGAGGGAAGAAGCGTGTTTGGAGGAAGAGGATTCAGAGGAAATTCAAAGGGGATAGT 557
Query 630 GAGAAAAAGTCTGAGATTTCCGGTGAAATGGAAGATCGGATTCTGGAAA-ATGCGGAGGA 688
||||||| | ||| || || ||||||||||||||||| ||||| |||| | ||||||||
Sbjct 558 GAGAAAAGGACTGCTATATCTGGTGAAATGGAAGATCGAATTCTCGAAACA-GCGGAGGA 616
Query 689 GATTGGTGGTTCTGTTGATAAGGT-AAAGGCTAGAGCTTTAAGGAAACAGAGAGAGTTCG 747
||||||||| |||||||||| | ||| ||||| ||||| ||||||||||||||||||
Sbjct 617 GATTGGTGGCCCTGTTGATAAAATCAAA-GCTAGGGCTTTGCGGAAACAGAGAGAGTTCG 675
Query 748 AAAAGGCGAAAAAGGCGGTA-ACGAGGTATAACTCTGATGCTAATTACAGATTACTGTTT 806
||||||||||||||||| || | |||||||||||||||||||||||||||||||||||||
Sbjct 676 AAAAGGCGAAAAAGGCGCTAGA-GAGGTATAACTCTGATGCTAATTACAGATTACTGTTT 734
Query 807 GATAGAATTGCGGATTTGTTTGCGGTTTTGTTGAAATCGGATTTGAAGTATTTGAATTCG 866
||||||||||||||||||||||| | ||||||||||||||||||||||| ||||||||||
Sbjct 735 GATAGAATTGCGGATTTGTTTGCCGATTTGTTGAAATCGGATTTGAAGTGTTTGAATTCG 794
Query 867 AATGGGTTGACTAAGATTAGTTTAGCTTCGAAATGGTGTCCTTCGGTTGATTCTTCGTAT 926
|||| ||||| ||||||| ||||||||||||||||||||||||| || ||||||||||||
Sbjct 795 AATGAGTTGAATAAGATTGGTTTAGCTTCGAAATGGTGTCCTTCTGTCGATTCTTCGTAT 854
Query 927 GATAAGGCTACTTTGATATGTGAGGCAATTGCTAGAAGGATGTTTCCTAGAGAGGAGTAT 986
|||||| ||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 855 GATAAGACTACTTTGATATGTGAGGCGATTGCTAGAAGGATGTTTCCTAGAGATGAGTAT 914
Query 987 GAAGGTATCGAAGAAGCGCATTATGCGTATAGGATTAGAGATAGGTTGAGGAAAGAAGTT 1046
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 915 GAAGGTATCGAAGAAGCGCATTATGCGTATAGGATTAGAGATAGGTTGAGGAAAGAAGTT 974
Query 1047 CTTGTGCCGTTGCATAAAGCGCTTGAGTTTCCGGAGTTGT-TCATGAGTGCTAAGGAATG 1105
|| |||||||| ||||||||||| || || || ||| ||| | |||||||| ||||||||
Sbjct 975 CTCGTGCCGTTACATAAAGCGCTCGAATTACCAGAGGTGTCT-ATGAGTGCCAAGGAATG 1033
Query 1106 GAATTTGTTGAAGTATAATAGAGTTCCTTCTGTTGCTATGAAGAATTACAAGA-A-GCTG 1163
||||||||||||||| ||||||||||||||||| |||||| ||||||||| || | |||
Sbjct 1034 GAATTTGTTGAAGTACAATAGAGTTCCTTCTGTGGCTATGCAGAATTACAGGACACGCT- 1092
Query 1164 TTTGAGGAACATGATAGCGAGAGGTTTACCGAGTTTTTGGAGGATGTGA-AGTCCGGAAA 1222
|| | |||||| |||| ||||||||| ||||||||||||| |||||||| | || || ||
Sbjct 1093 TT-GTGGAACACGATAACGAGAGGTTCACCGAGTTTTTGGGGGATGTGAGA-TCTGGGAA 1150
Query 1223 GAAGAAGATTGCGGCTGGTGCGTTGCTTCCTCATCAGATAATCAACCAGCTGGAGGATGA 1282
|||||| || ||||||||||| |||||||||||||||||||||| | |||| ||| ||||
Sbjct 1151 GAAGAAAATCGCGGCTGGTGCATTGCTTCCTCATCAGATAATCAGCGAGCTTGAGAATGA 1210
Query 1283 TAGTGGGAGTGAAGTTGGTGCGGAAGTTGCAGAACTTCAATGGGCGAGAATGGTTGATGA 1342
||||| | |||||||||||| ||||| ||||| ||||||||||| |||||||| |||||
Sbjct 1211 TAGTGAAAATGAAGTTGGTGCAGAAGTAGCAGAGCTTCAATGGGCAAGAATGGTGGATGA 1270
Query 1343 TCTTGCTAAGAAAGGGAAGCTTAA-GAATTCACTGGCGGTTTGTGATGTCTCTGGAAGTA 1401
|||||| ||||||||||| || | ||||||| ||||| ||||||||||||| ||||| |
Sbjct 1271 TCTTGCCAAGAAAGGGAAA-TTGACGAATTCATTGGCGATTTGTGATGTCTCGGGAAGCA 1329
Query 1402 TGTCTGGTACACCTATGGAGGTTTGTGTAGCGCTCGGGTTACTGGTTTCGGAGCTTAGTG 1461
|| |||||||||||||| | ||||||||||| ||||||||| ||||||| || |||| |
Sbjct 1330 TGGCTGGTACACCTATGAATGTTTGTGTAGCACTCGGGTTATTGGTTTCAGAACTTAACG 1389
Query 1462 AAGAGCCGTGGAAAGGGAAAGTTATCACCTTTAGCGAAAACCCGGAGCTGCATATTGTCA 1521
|||||||||||||||||||||||||||||||||||||||||||| |||| ||| | ||||
Sbjct 1390 AAGAGCCGTGGAAAGGGAAAGTTATCACCTTTAGCGAAAACCCGCAGCTTCATGTAGTCA 1449
Query 1522 CGGGTTCGAGTCTGAGAGAAAAGACTCAGTTTGTTAGAGAAATGGAATGGGGAATGAACA 1581
|||||||||||||||||||||||||||||||||| |||| |||||| |||||||||||||
Sbjct 1450 CGGGTTCGAGTCTGAGAGAAAAGACTCAGTTTGTCAGAGCAATGGATTGGGGAATGAACA 1509
Query 1582 CGGATTTTCAGATAG-TGTTTGATCGTATTCTAGAAGTTGCAGTCGAGAATAACTTAACC 1640
| |||||||||| || |||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 1510 CAGATTTTCAGA-AGGTGTTTGATCGGATTCTAGAGGTTGCAGTCGAGAATAACTTAACC 1568
Query 1641 GATGACCAGATGATCAAGCGGTTGTTTGTGTTCAGCGACATGGAGTTTGATGATGCAATG 1700
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1569 AATGACCAGATGATCAAGCGGTTGTTTGTGTTCAGCGACATGGAGTTTGATGATGCAA-G 1627
Query 1701 -GCAAA---CAGCCATTCGGAGGTGAGTTACCATCTGAGTGTGGAGGACCGATTGAAGA- 1755
| ||| |||||||||||| |||||| || | | ||| || | |||| | ||
Sbjct 1628 AGTAAAAGACAGCCATTCGGAAGTGAGTGACTA-C-GAGAGTA-ACT-CCGAGAGT-GAC 1682
Query 1756 TATCGA-AG-GAACGGTCC-A-AG----GAGAAATGGGAGACAGATTATGAGGTGGTTCA 1807
||| || || | | ||| | || |||||||||||||| || ||||| || |||||
Sbjct 1683 TAT-GAGAGTGT-C--TCCGAGAGTTTTGAGAAATGGGAGACGGACTATGAAGTTGTTCA 1738
Query 1808 GAGGAAGTATAAAGAGAAGGGTTTTCAGAATGTTCCAGAAATGGTATTTTGGAACTTAAG 1867
||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 1739 GAGAAAGTATAAAGAGAAGGGTTTTCAGAATGTTCCTGAAATTGTATTTTGGAACTTAAG 1798
Query 1868 AGACTCATCGGCTACTCCGGTGGT-TGCTAACCAGAAAGGAGTAGCTATGGTTAGCGGGT 1926
|||||| || ||||| || |||| | |||| ||||||||||||||||||||||||||||
Sbjct 1799 AGACTCGTCAGCTACACCCGTGGCGT-CTAAGCAGAAAGGAGTAGCTATGGTTAGCGGGT 1857
Query 1927 TTTCGAAGAATCTACTGACTCTGTTTCTTGAAGAAGGTGGGATCGTGAATCCTGAAGATG 1986
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 1858 TTTCGAAGAATCTACTGACTCTGTTTCTTGAGGAAGGTGGGATTGTGAATCCTGAAGATG 1917
Query 1987 TCATGTGGATT-GCCATCAAAGGTGAGGAGTATAAGAAGCTTGTTGTTTTTGACTGAGAT 2045
|||||||| || ||||| |||||||| |||||||||||||| | ||||| ||||||||||
Sbjct 1918 TCATGTGG-TTAGCCATTAAAGGTGATGAGTATAAGAAGCTAGCTGTTTATGACTGAGAT 1976
Score = 82.4 bits (44), Expect = 1e-14
Identities = 48/50 (96%), Gaps = 0/50 (0%)
Strand=Plus/Plus
Query 71 TTCAATGGCTTCTTCCACTACGATCCTTCTTGGTCCACCTTCCGTCGCCG 120
|||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 23 TTCAATGGCTTCTTCCACTACGATCCTTCTGGGACCACCTTCCGTCGCCG 72
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85855412230
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5