BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G43410.1

Length=396
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg948820 jgi|Araly1|948820|scaffold_800707.1                        568    1e-161
  Ahg915897 jgi|Araly1|915897|Al_scaffold_0008_648                     285    2e-76 


> Ahg948820 jgi|Araly1|948820|scaffold_800707.1
Length=443

 Score =  568 bits (307),  Expect = 1e-161
 Identities = 370/400 (93%), Gaps = 5/400 (1%)
 Strand=Plus/Plus

Query  1    ATGGATCAAGGAGGTCGAGGTGTCGGTGCCGAGCATGGAAAGTACCGGGGAGTTCGGAGA  60
            ||||||||||||||||| |||| ||| |||||||||||||||||||||||||||||||||
Sbjct  25   ATGGATCAAGGAGGTCGTGGTGGCGGAGCCGAGCATGGAAAGTACCGGGGAGTTCGGAGA  84

Query  61   CGACCTTGGGGAAAATATGCAGCAGAGATACGAGATTCGAGGAAGCACGGTGAACGTGTG  120
            || |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  85   CGGCCTTGGGGAAAATATGCAGCGGAGATACGAGATTCGAGGAAGCACGGTGAACGTGTG  144

Query  121  TGGCTTGGAACGTTCGATACGGCAGAGGAAGCGGCTAGAGCCTATGACCAAGCTGCTTAC  180
            |||||||||||||||||||| || || |||||||||||||||||||||||||| || |||
Sbjct  145  TGGCTTGGAACGTTCGATACAGCGGAAGAAGCGGCTAGAGCCTATGACCAAGCAGCCTAC  204

Query  181  TCCATGAGAGGCCAAG-CAGCAATCCTTAACTTCCCTCATGAGTATAACATGGGGAG---  236
            ||||||||||||| || | ||||| || |||||||||||||||||||||||||||||   
Sbjct  205  TCCATGAGAGGCC-AGTCCGCAATTCTAAACTTCCCTCATGAGTATAACATGGGGAGTAC  263

Query  237  TGGTGTCTCTTCTTCCACCGCCATGGCTGGATCTTCCTCCGCCTCCGCCTCCGCTTCTTC  296
            ||| | ||||||||||||||| ||||||||||| |||||| |||| ||||||||||||||
Sbjct  264  TGGCGGCTCTTCTTCCACCGCTATGGCTGGATCCTCCTCCTCCTCTGCCTCCGCTTCTTC  323

Query  297  TTCTTCTAGGCAAGTTTTTGAATTTGAGTACTTGGATGATAGTGTTTTGGAGGAGCTCCT  356
            |||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct  324  TTCTTCTAGGGAAGTTTTTGAATTTGAGTATTTGGATGATAGTGTTTTGGAGGAGCTCCT  383

Query  357  TGAGGAAGGAGAGAAACCTAACAAGGGCAAGAAGAAATGA  396
            |||||||| |||||| ||||| |||||||||||||| |||
Sbjct  384  TGAGGAAGAAGAGAAGCCTAAGAAGGGCAAGAAGAAGTGA  423


> Ahg915897 jgi|Araly1|915897|Al_scaffold_0008_648
Length=216

 Score =  285 bits (154),  Expect = 2e-76
 Identities = 197/217 (91%), Gaps = 5/217 (2%)
 Strand=Plus/Plus

Query  184  ATGAGAGGCCAAG-CAGCAATCCTTAACTTCCCTCATGAGTATAACATGGGGAG---TGG  239
            |||||||||| || | ||||| || |||||||||||||||||||||||||||||   |||
Sbjct  1    ATGAGAGGCC-AGTCCGCAATTCTAAACTTCCCTCATGAGTATAACATGGGGAGTACTGG  59

Query  240  TGTCTCTTCTTCCACCGCCATGGCTGGATCTTCCTCCGCCTCCGCCTCCGCTTCTTCTTC  299
             | ||||||||||||||| ||||||||||| |||||| |||| |||||||||||||||||
Sbjct  60   CGGCTCTTCTTCCACCGCTATGGCTGGATCCTCCTCCTCCTCTGCCTCCGCTTCTTCTTC  119

Query  300  TTCTAGGCAAGTTTTTGAATTTGAGTACTTGGATGATAGTGTTTTGGAGGAGCTCCTTGA  359
            ||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct  120  TTCTAGGGAAGTTTTTGAATTTGAGTATTTGGATGATAGTGTTTTGGAGGAGCTCCTTGA  179

Query  360  GGAAGGAGAGAAACCTAACAAGGGCAAGAAGAAATGA  396
            ||||| |||||| ||||| |||||||||||||| |||
Sbjct  180  GGAAGAAGAGAAGCCTAAGAAGGGCAAGAAGAAGTGA  216



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14193879108


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5