BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G43420.1
Length=1456
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494656 jgi|Araly1|494656|fgenesh2_kg.8__472__AT5G43420.1 1781 0.0
> Ahg494656 jgi|Araly1|494656|fgenesh2_kg.8__472__AT5G43420.1
Length=1261
Score = 1781 bits (964), Expect = 0.0
Identities = 1154/1241 (93%), Gaps = 31/1241 (2%)
Strand=Plus/Plus
Query 122 ATGGATCTATCAAACCGTCGCAATCCTCTCCGGGATCTGAGCTTTCCTCCTCCTCCGCCG 181
||||||||||||||||||| ||||||||||||||||||||||||||| || || ||||||
Sbjct 31 ATGGATCTATCAAACCGTCACAATCCTCTCCGGGATCTGAGCTTTCCACCGCCGCCGCCG 90
Query 182 CCACCTATTTTCCACCGTGCGAGCTCTACGGGGACGAGTTTTCCGATCTTAGCCGTCGCG 241
|||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 91 CCACCTATCTTCCACAGTGCGAGCTCTACGGGGACGAGTTTTCCGATCTTAGCCGTCGCG 150
Query 242 GTGATCGGAATCTTAGCCACAGCATTTTTACTTGTAAGCTATTATGTTTTTGTTATCAAA 301
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 151 GTGATCGGAATCTTAGCCACAGCATTCTTACTTGTAAGCTACTATGTTTTTGTTATCAAA 210
Query 302 TGTTGTCTCAACTGGCACCGAATCGACATTCTTGGTCGATTCTCGTTATCTCGAAGGCGA 361
|||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 211 TGTTGTCTTAACTGGCACCGAATCGACATTCTTCATCGATTCTCGTTATCTCGAAGGCGA 270
Query 362 CGCAACGACCAAGATCCTTTAATGGTTTACTCTCCAGAGCTTAGAAGCCGCGGTCTTGAT 421
||||||||||||||||||||||||||||||||||||||||| |||| ||| |||||||||
Sbjct 271 CGCAACGACCAAGATCCTTTAATGGTTTACTCTCCAGAGCTCAGAAACCGTGGTCTTGAT 330
Query 422 GAATCCGTCATTAGAGCAATCCCAATCTTTAAGTTCAAGAAGAGATACGACCAAAACGAC 481
||||| |||||||||||||||||||||||||| |||||||||||| | ||||||||||||
Sbjct 331 GAATCTGTCATTAGAGCAATCCCAATCTTTAAATTCAAGAAGAGAAATGACCAAAACGAC 390
Query 482 GGCGTTTTTACAGgagaaggagaagaagaagaagagaagagaTCTCAAGAATGCTCTGTT 541
|||||||||||||||| | || | ||||||||||||||| ||||||||||||||||||
Sbjct 391 GGCGTTTTTACAGGAG-A--AG--G-AGAAGAAGAGAAGAGTTCTCAAGAATGCTCTGTT 444
Query 542 TGTTTGAGTGAGTTTCAAGATGAGGAGAAGCTGAGGATTATCCCAAATTGTTCTCATTTG 601
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 445 TGTTTGAGTGAGTTTCAAGATGAGGAGAAGCTGAGGATTATCCCAAATTGTTGTCATTTG 504
Query 602 TTTCATATCGACTGTATCGATGTGTGGCTTCAGAACAACGCCAATTGTCCTTTGTGTAGA 661
||||||||||| ||||||||||| |||||||||||||| || ||||| ||||||||||||
Sbjct 505 TTTCATATCGATTGTATCGATGTTTGGCTTCAGAACAATGCTAATTGCCCTTTGTGTAGA 564
Query 662 ACTAGGGTTTCTTGTGACACAAGTTTTCCTCCGGATCGGGTTTCTGCGCCGAGCACTTCT 721
||||||||||||||||||||||||| ||||| ||||||||||||||||||||| |||||
Sbjct 565 GCTAGGGTTTCTTGTGACACAAGTTTCCCTCCTGATCGGGTTTCTGCGCCGAGCTCTTCT 624
Query 722 CCCGAGAAT-C-----T-GG-TC----A------TGTTAAGAGGTGAGAACGAGTATGTG 763
|| |||||| | | || || | |||||||||| |||||||||||||||
Sbjct 625 CCAGAGAATCCGTTTGTGGGATCTGGTACCGTCGTGTTAAGAGGGGAGAACGAGTATGTG 684
Query 764 GTCATTGAGCTGGGCAGTAGCATCGGTAGTGACAGAGATAGTCCAAGACA-CGGAAGGTT 822
|||||||||||||||| ||||| ||||||||||||||||||||| ||| | |||||||||
Sbjct 685 GTCATTGAGCTGGGCAATAGCACCGGTAGTGACAGAGATAGTCCGAGA-AGCGGAAGGTT 743
Query 823 ACTTACGGGACAAGAAAGGTCAAATTCAGGTTATCTACTGAACGAAAACACCCAAAATTC 882
||||| || |||||||||||||||||||||| | ||||| | ||||||||| || |||||
Sbjct 744 ACTTATGGAACAAGAAAGGTCAAATTCAGGTCACCTACTCACCGAAAACACTCAGAATTC 803
Query 883 GATCAGTCCATCTCCGAAGAAGCTTGACCGCGGAGGGCTTCCAAGAAAATTCCGAAAGCT 942
|||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||
Sbjct 804 GATCAGTCCATCTCCGAAGAAGTTTGACCGCGGAGGGCTTCCAAGAAAATCCCGAAAGCT 863
Query 943 TCACAAGATGACGAGTATGGGAGACGAATGCATCGACATAAGAAGAGGTAAAGACGAACA 1002
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 864 TCACAAGATGACGAGTATGGGAGACGAATGCATCGACATAAGAAGAGGTATAGACGAACA 923
Query 1003 GTTCGGTAGTATTCAGCCCATTAGAAGATCAATCTCAATGGATTCATCGGCGGATAGACA 1062
||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 924 GTTCGGTAGTATTCAACCCATTAGAAGATCAATCTCAATGGATTCATCGGCGGATCGACA 983
Query 1063 GCTTTACTTGGCGGTTCAAGAGGCGATTCGGAAAAACCGCGAAGTTCTGGTGGTTGGAGA 1122
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 984 GCTTTACCTGACGGTTCAAGAGGCGATTCGGAAAAACCGCGAAGTTCTGGTGGTTGGAGA 1043
Query 1123 CGGAGGAGGATGTAGCAGTAGTAGTGGCAATGTTAGTAATTCCAAAGTGAAGAGATCTTT 1182
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1044 CGGAGGAGGATGTAGTAGTAGTAGTGGCAATGTTAGTAATTCCAAAGTGAAGAGATCTTT 1103
Query 1183 CTTCTCTTTTGGGAGCAGTAGACGTTCTAGAAGTTCCTCTAAATTGCCACTTTATTTTGA 1242
||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||
Sbjct 1104 CTTCTCTTTTGGGAGCAGTAGACGTTCTAGAAGTTCCTCTATATTGCCCCTTTATTTTGA 1163
Query 1243 ACCCTAATAAGCCGctttgcttatttgttttattttcttgt-tcctttctacatttg-at 1300
|||||||| |||||||||||| |||||||||||||||||| || |||||||||||| ||
Sbjct 1164 ACCCTAATGGGCCGCTTTGCTTCTTTGTTTTATTTTCTTGTATC-TTTCTACATTTGTAT 1222
Query 1301 ttctattatttcattttcaaatatttttgagatggattttt 1341
|| |||||||||||||| || ||||||||||||||||||||
Sbjct 1223 TT-TATTATTTCATTTTTAA-TATTTTTGAGATGGATTTTT 1261
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54469050350
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5