BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G43420.1 Length=1456 Score E Sequences producing significant alignments: (Bits) Value Ahg494656 jgi|Araly1|494656|fgenesh2_kg.8__472__AT5G43420.1 1781 0.0 > Ahg494656 jgi|Araly1|494656|fgenesh2_kg.8__472__AT5G43420.1 Length=1261 Score = 1781 bits (964), Expect = 0.0 Identities = 1154/1241 (93%), Gaps = 31/1241 (2%) Strand=Plus/Plus Query 122 ATGGATCTATCAAACCGTCGCAATCCTCTCCGGGATCTGAGCTTTCCTCCTCCTCCGCCG 181 ||||||||||||||||||| ||||||||||||||||||||||||||| || || |||||| Sbjct 31 ATGGATCTATCAAACCGTCACAATCCTCTCCGGGATCTGAGCTTTCCACCGCCGCCGCCG 90 Query 182 CCACCTATTTTCCACCGTGCGAGCTCTACGGGGACGAGTTTTCCGATCTTAGCCGTCGCG 241 |||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 91 CCACCTATCTTCCACAGTGCGAGCTCTACGGGGACGAGTTTTCCGATCTTAGCCGTCGCG 150 Query 242 GTGATCGGAATCTTAGCCACAGCATTTTTACTTGTAAGCTATTATGTTTTTGTTATCAAA 301 |||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| Sbjct 151 GTGATCGGAATCTTAGCCACAGCATTCTTACTTGTAAGCTACTATGTTTTTGTTATCAAA 210 Query 302 TGTTGTCTCAACTGGCACCGAATCGACATTCTTGGTCGATTCTCGTTATCTCGAAGGCGA 361 |||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 211 TGTTGTCTTAACTGGCACCGAATCGACATTCTTCATCGATTCTCGTTATCTCGAAGGCGA 270 Query 362 CGCAACGACCAAGATCCTTTAATGGTTTACTCTCCAGAGCTTAGAAGCCGCGGTCTTGAT 421 ||||||||||||||||||||||||||||||||||||||||| |||| ||| ||||||||| Sbjct 271 CGCAACGACCAAGATCCTTTAATGGTTTACTCTCCAGAGCTCAGAAACCGTGGTCTTGAT 330 Query 422 GAATCCGTCATTAGAGCAATCCCAATCTTTAAGTTCAAGAAGAGATACGACCAAAACGAC 481 ||||| |||||||||||||||||||||||||| |||||||||||| | |||||||||||| Sbjct 331 GAATCTGTCATTAGAGCAATCCCAATCTTTAAATTCAAGAAGAGAAATGACCAAAACGAC 390 Query 482 GGCGTTTTTACAGgagaaggagaagaagaagaagagaagagaTCTCAAGAATGCTCTGTT 541 |||||||||||||||| | || | ||||||||||||||| |||||||||||||||||| Sbjct 391 GGCGTTTTTACAGGAG-A--AG--G-AGAAGAAGAGAAGAGTTCTCAAGAATGCTCTGTT 444 Query 542 TGTTTGAGTGAGTTTCAAGATGAGGAGAAGCTGAGGATTATCCCAAATTGTTCTCATTTG 601 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 445 TGTTTGAGTGAGTTTCAAGATGAGGAGAAGCTGAGGATTATCCCAAATTGTTGTCATTTG 504 Query 602 TTTCATATCGACTGTATCGATGTGTGGCTTCAGAACAACGCCAATTGTCCTTTGTGTAGA 661 ||||||||||| ||||||||||| |||||||||||||| || ||||| |||||||||||| Sbjct 505 TTTCATATCGATTGTATCGATGTTTGGCTTCAGAACAATGCTAATTGCCCTTTGTGTAGA 564 Query 662 ACTAGGGTTTCTTGTGACACAAGTTTTCCTCCGGATCGGGTTTCTGCGCCGAGCACTTCT 721 ||||||||||||||||||||||||| ||||| ||||||||||||||||||||| ||||| Sbjct 565 GCTAGGGTTTCTTGTGACACAAGTTTCCCTCCTGATCGGGTTTCTGCGCCGAGCTCTTCT 624 Query 722 CCCGAGAAT-C-----T-GG-TC----A------TGTTAAGAGGTGAGAACGAGTATGTG 763 || |||||| | | || || | |||||||||| ||||||||||||||| Sbjct 625 CCAGAGAATCCGTTTGTGGGATCTGGTACCGTCGTGTTAAGAGGGGAGAACGAGTATGTG 684 Query 764 GTCATTGAGCTGGGCAGTAGCATCGGTAGTGACAGAGATAGTCCAAGACA-CGGAAGGTT 822 |||||||||||||||| ||||| ||||||||||||||||||||| ||| | ||||||||| Sbjct 685 GTCATTGAGCTGGGCAATAGCACCGGTAGTGACAGAGATAGTCCGAGA-AGCGGAAGGTT 743 Query 823 ACTTACGGGACAAGAAAGGTCAAATTCAGGTTATCTACTGAACGAAAACACCCAAAATTC 882 ||||| || |||||||||||||||||||||| | ||||| | ||||||||| || ||||| Sbjct 744 ACTTATGGAACAAGAAAGGTCAAATTCAGGTCACCTACTCACCGAAAACACTCAGAATTC 803 Query 883 GATCAGTCCATCTCCGAAGAAGCTTGACCGCGGAGGGCTTCCAAGAAAATTCCGAAAGCT 942 |||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| Sbjct 804 GATCAGTCCATCTCCGAAGAAGTTTGACCGCGGAGGGCTTCCAAGAAAATCCCGAAAGCT 863 Query 943 TCACAAGATGACGAGTATGGGAGACGAATGCATCGACATAAGAAGAGGTAAAGACGAACA 1002 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 864 TCACAAGATGACGAGTATGGGAGACGAATGCATCGACATAAGAAGAGGTATAGACGAACA 923 Query 1003 GTTCGGTAGTATTCAGCCCATTAGAAGATCAATCTCAATGGATTCATCGGCGGATAGACA 1062 ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| Sbjct 924 GTTCGGTAGTATTCAACCCATTAGAAGATCAATCTCAATGGATTCATCGGCGGATCGACA 983 Query 1063 GCTTTACTTGGCGGTTCAAGAGGCGATTCGGAAAAACCGCGAAGTTCTGGTGGTTGGAGA 1122 ||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 984 GCTTTACCTGACGGTTCAAGAGGCGATTCGGAAAAACCGCGAAGTTCTGGTGGTTGGAGA 1043 Query 1123 CGGAGGAGGATGTAGCAGTAGTAGTGGCAATGTTAGTAATTCCAAAGTGAAGAGATCTTT 1182 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1044 CGGAGGAGGATGTAGTAGTAGTAGTGGCAATGTTAGTAATTCCAAAGTGAAGAGATCTTT 1103 Query 1183 CTTCTCTTTTGGGAGCAGTAGACGTTCTAGAAGTTCCTCTAAATTGCCACTTTATTTTGA 1242 ||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| Sbjct 1104 CTTCTCTTTTGGGAGCAGTAGACGTTCTAGAAGTTCCTCTATATTGCCCCTTTATTTTGA 1163 Query 1243 ACCCTAATAAGCCGctttgcttatttgttttattttcttgt-tcctttctacatttg-at 1300 |||||||| |||||||||||| |||||||||||||||||| || |||||||||||| || Sbjct 1164 ACCCTAATGGGCCGCTTTGCTTCTTTGTTTTATTTTCTTGTATC-TTTCTACATTTGTAT 1222 Query 1301 ttctattatttcattttcaaatatttttgagatggattttt 1341 || |||||||||||||| || |||||||||||||||||||| Sbjct 1223 TT-TATTATTTCATTTTTAA-TATTTTTGAGATGGATTTTT 1261 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 54469050350 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5