BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G43430.1
Length=999
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494654 jgi|Araly1|494654|fgenesh2_kg.8__470__AT5G43430.1 1447 0.0
> Ahg494654 jgi|Araly1|494654|fgenesh2_kg.8__470__AT5G43430.1
Length=935
Score = 1447 bits (783), Expect = 0.0
Identities = 887/937 (95%), Gaps = 8/937 (1%)
Strand=Plus/Plus
Query 59 ATGAAGATTCTCGTCGCCGTTAAACGTGTCGTCGACTACGCCGTCAAGATCCGAGTCAAA 118
||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||
Sbjct 1 ATGAAGATTCTCGTCGCCGTTAAACGTGTCGTCGACTACGCAGTCAAAATCCGTGTCAAA 60
Query 119 CCCGATAAGACTGGTGTAGAAACCCAAAATGTGAAGATGTCAATGAATCCATTTTGTGAG 178
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CCCGACAAGACTGGTGTAGAAACCCAAAATGTGAAGATGTCAATGAATCCATTTTGTGAG 120
Query 179 ATCGCGCTTGAGGAAGCGCTTCGAATCAAAGAAGCTGGTTTTGCTAAAGAGGTTATTGCA 238
||||| ||||||||||| ||||||||||||||||||||||||||| |||||||||||||
Sbjct 121 ATCGCACTTGAGGAAGCTCTTCGAATCAAAGAAGCTGGTTTTGCTGAAGAGGTTATTGCT 180
Query 239 GTGAGTATTGGACCTTCACAATGTGTGGATACACTTCGTACTGGTTTAGCTATGGGTGCT 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GTGAGTATTGGACCTTCACAATGTGTGGATACACTTCGTACTGGTTTAGCTATGGGTGCT 240
Query 299 GATCGAGGAATCCATGTTGAGACCAATTCTATTTTTCTTCCTTTGACGATTGCTAAGATC 358
||| ||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 241 GATAGAGGAATTCATGTTGAGACCAATTCTAGTTTTCTTCCTTTGACGATTGCTAAGATC 300
Query 359 TTGAAGAGTTTAGCTGATGTTGAGAATCCTGGATTGATTTTCTTAGGGAAACAGGCGATA 418
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TTGAAGAGTTTAGCTGAAGTTGAGAATCCTGGATTGATTTTCTTAGGGAAACAGGCGATA 360
Query 419 GATGATGATTGCAATCAAACAGGACAGATGGTTGCAGCTTTACTTGGTTGGCCACAAGCA 478
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 361 GATGATGATTGCAATCAAACAGGACAAATGGTTGCAGCTTTGCTTGGTTGGCCACAAGCA 420
Query 479 ACGTTTGCATCGAAGGTTGTGTTGGATAAAGATAAGAATGTTGCAACCGTGGATAGAGAA 538
|| |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 421 ACCTTTGCATCGAAGGTTGTGTTGGATAAGGATAAGAATGTTGCAACTGTGGATAGAGAA 480
Query 539 GTGGATGGAGGTCTTGAGACTCTTAATGTAGACTTACCCGCTGTGATAACAACTGATTTG 598
|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 481 GTAGATGGAGGTCTTGAGACTCTTAATGTAGACTTACCCGCTGTGATAACAACGGATTTG 540
Query 599 AGGCTGAACCAACCAAGATATGCATCACTCCCTAACATAATGAAGGCAAAATCAAAGCCT 658
||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 541 AGGCTGAACCAACCAAGATATGCATCACTCCCTAACATAATGAAGGCTAAATCGAAGCCG 600
Query 659 ATAAAGAAAATGACGGTGCAAGATCTGAAAGTAGACATTAAATCCGACATAGAGATCTTG 718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 ATAAAGAAAATGACGGTGCAAGATCTGAAAGTAGACATTAAATCCGACATAGAGATCTTG 660
Query 719 GAAGTCACGGAGCCTCCAAAGAGGAAATCTGGGGTTATGGTTTCTTCGGTGGATGAGTTG 778
|||||||| ||||||||||||||||||||||| |||||||||||||| ||||| ||||||
Sbjct 661 GAAGTCACAGAGCCTCCAAAGAGGAAATCTGGCGTTATGGTTTCTTCAGTGGACGAGTTG 720
Query 779 ATAGATAAACTTAAAAATGAAGCTCATGTTGTTTGAAGGAAGAAACATTT---GTCTTTT 835
|||||||| |||||||||||||||||||| |||||||||||||||| ||| |||||||
Sbjct 721 ATAGATAAGCTTAAAAATGAAGCTCATGTAGTTTGAAGGAAGAAACGTTTTATGTCTTTT 780
Query 836 TC-CCA-TTCTGCTACACACTTCTT-TCTTCTTATCTACGTTGCTGTTTCAGGCATCAAG 892
| ||| || |||||||||||| | |||||||||||||||||||||||||||||| |||
Sbjct 781 TTTCCAATT-TGCTACACACTT-TGATCTTCTTATCTACGTTGCTGTTTCAGGCATAAAG 838
Query 893 TGGAAGTAAATAAATAAATCAAGTGTGGATCTTGTTATTCAGTAATTCAATGTCTTCACT 952
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 839 TGGAAGTAAATAAAGAAATCAAGTGTGGATCTTGTTATTCAGTAATTCAATGTCTTCTCT 898
Query 953 GTAAAAAATTCTTTCTTATTAACAAAATAGTTGATGT 989
| || ||||||||||| ||| |||||| || ||||
Sbjct 899 ACATAACATTCTTTCTTACTAATAAAATAATTCATGT 935
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37131721158
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5