BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G43440.1
Length=1270
Score E
Sequences producing significant alignments: (Bits) Value
Ahg948815 jgi|Araly1|948815|scaffold_800702.1 1677 0.0
Ahg496088 jgi|Araly1|496088|fgenesh2_kg.8__1904__AT5G59540.1 529 2e-149
Ahg917696 jgi|Araly1|917696|Al_scaffold_0008_2447 499 2e-140
> Ahg948815 jgi|Araly1|948815|scaffold_800702.1
Length=1141
Score = 1677 bits (908), Expect = 0.0
Identities = 1060/1135 (93%), Gaps = 4/1135 (0%)
Strand=Plus/Plus
Query 35 aaaaaaCAAAACATCATGACAGAAAAATCTGCAGAACTCGTTCGTTTGAACGAACTCAAG 94
|||||| | |||||||||||||||||||| | |||| ||| |||||||||||| ||||||
Sbjct 9 AAAAAATAGAACATCATGACAGAAAAATCCGGAGAAATCGGTCGTTTGAACGAGCTCAAG 68
Query 95 GCTTTTGTATCGAC-AAAAGCAGGTGTGAAAGGACTTGTCGATACCAAAATAACCGAAGT 153
|||||||| ||| | |||| |||| || |||||||| |||||||||||||||||||||||
Sbjct 69 GCTTTTGTCTCGTCGAAAA-CAGGAGTCAAAGGACTCGTCGATACCAAAATAACCGAAGT 127
Query 154 TCCTCGAATCTTCCATATCCCTTCTTCTTCAACTTTATCTAACAACAAACCTTCTGATAT 213
|||||||||||| ||| ||||||||||| | ||| |||||||||||||||||||||||||
Sbjct 128 TCCTCGAATCTTTCATGTCCCTTCTTCTACTACTATATCTAACAACAAACCTTCTGATAT 187
Query 214 CTTTGGCTTAAACCTCACTGTCCCAATCATTGACCTCGGAGATGGTAACACATCTGCTGC 273
|| ||||||||||||||||||||||||| |||||||||||||| |||| |||| || |
Sbjct 188 CTCCAGCTTAAACCTCACTGTCCCAATCATCGACCTCGGAGATGGCAACATATCTTCTAC 247
Query 274 AAGAAACGTCCTCGTTTCCAAGATTAAAGAAGCAGCTGAGAATTGGGGATTTTTCCAAGT 333
||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 248 AAGAAACGTTCTCGTTTCGAAGATTAAAGAAGCAGCTGAGAATTGGGGATTTTTCCAAGT 307
Query 334 AATCAATCATGGTATTCCTTTAACTGTTCTTAAAGATATCAAACAAGGTGTTCGAAGATT 393
|||||||||||||| ||||| ||| ||||| |||| || |||||||| |||||||||||
Sbjct 308 GATCAATCATGGTATACCTTTGACTATTCTTGAAGAGATTAAACAAGGAGTTCGAAGATT 367
Query 394 TCATGAGGAAGATCCAGAGGTCAAGAAACAGTATTTTGCTACAGATTTCAATACAAGATT 453
|||||| |||||||||||| ||||||||||||||||||||| ||||||||||| ||||||
Sbjct 368 TCATGAAGAAGATCCAGAGATCAAGAAACAGTATTTTGCTAAAGATTTCAATAAAAGATT 427
Query 454 TGCTTACAACACCAACTTCGATATTCATTATTCTTCTCCTATGAATTGGAAAGACTCTTT 513
||||||||||||||||||||||||| || ||||||||||||||||||||| |||||||||
Sbjct 428 TGCTTACAACACCAACTTCGATATTTATCATTCTTCTCCTATGAATTGGAGAGACTCTTT 487
Query 514 CACTTGCTACACTTGTCCTCAAGATCCTCTAAAGCCAGAGGAAATCCCACTAGCTTGCAG 573
|||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 488 CACTTGTTACACTTGTGTTCAAGATCCTCTAAAGCCAGAGGAAATCCCACTAGCTTGCAG 547
Query 574 GGATGTTGTGATTGAATACTCGAAGCATGTAATGGAATTAGGAGGTTTACTCTTCCAACT 633
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 548 GGATGTTGTGATTGAATACTCGAAGCATGTAATGGAATTAGGAGGTTTACTCTTCCAACT 607
Query 634 TCTCTCAGAAGCTTTAGGTTTAGACTCTGAGATTCTTAAGAACATGGATTGTCTCAAGGG 693
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 608 TCTCTCAGAAGCTTTAGGTTTAGACTCTGAGATCCTTAAGAACATGGATTGTCTCAAGGG 667
Query 694 TTTGCTTATGCTCTGCCATTATTATCCACCTTGTCCACAACCTGACCTAACTTTGGGCAT 753
||||||||||||||||||||| ||||||||||| || || ||||||||||||||||||||
Sbjct 668 TTTGCTTATGCTCTGCCATTACTATCCACCTTGCCCTCAGCCTGACCTAACTTTGGGCAT 727
Query 754 AAGTAAACACACCGACAATTCCTTCATAACAATTCTTCTTCAAGATCAAATCGGTGGTCT 813
|||||||||||||||||| || ||||||||||||||||||||||| ||||||||||||||
Sbjct 728 AAGTAAACACACCGACAACTCTTTCATAACAATTCTTCTTCAAGACCAAATCGGTGGTCT 787
Query 814 TCAAGTTCTTCATCAAGATTCTTGGGTTGATGTAACTCCTGTTCCTGGAGCTCTTGTCAT 873
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 788 TCAAGTTCTTCATCAAGATTCTTGGGTAGATGTAACTCCTGTTCCTGGAGCTCTTGTCAT 847
Query 874 CAGTATCGGTGATTTCATGCAGCTGATCACAAACGATAAGTTCTTAAGTATGGAGCATAG 933
||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 848 CAGCATCGGTGATTTCATGCAGCTGATCACGAACGATAAGTTCTTAAGCGTGGAGCATAG 907
Query 934 GGTACGGGCAAACAGAGATGGACCGCGGATTTCAGTTGCTTGCTTCGTTAGCTCGGGAGT 993
|||||| ||||||||||| |||||||||||||||||||| ||||| ||||||||||||||
Sbjct 908 GGTACGTGCAAACAGAGAAGGACCGCGGATTTCAGTTGCGTGCTTTGTTAGCTCGGGAGT 967
Query 994 GTTTCCAAATTCCACTGTTTATGGACCGATAAAAGAGCTTCTTTCTGATGAAAACCCTGC 1053
||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||
Sbjct 968 GTTTCCAAATTCCACGGTTTATGGACCGATAAAAGAGCTTATTTCTGATGAAAACCCTGC 1027
Query 1054 AAAGTACAGAGACATCACTATACCAGAATACACTGTAGGATACCTAGCA-AGCATCTTCG 1112
||||||||||||||||||||||||||||||||||||||||||||| || | |||||| |
Sbjct 1028 AAAGTACAGAGACATCACTATACCAGAATACACTGTAGGATACCTTGCGGA-CATCTTTG 1086
Query 1113 ATGGAAAATCGCATTTGTCTAAGTTCCGGATATGAAGAAATTACTTGTATGGCTT 1167
|||||||||||||||||||||||||| ||||||||||||| |||||| ||||||
Sbjct 1087 ATGGAAAATCGCATTTGTCTAAGTTCAGGATATGAAGAAAAGACTTGTCTGGCTT 1141
> Ahg496088 jgi|Araly1|496088|fgenesh2_kg.8__1904__AT5G59540.1
Length=1223
Score = 529 bits (286), Expect = 2e-149
Identities = 626/786 (80%), Gaps = 39/786 (5%)
Strand=Plus/Plus
Query 311 GAGAATTGGGGATTTTTCCAAGTAATCAATCATGGTATTCCTTT-AACTGTTCTTAAAGA 369
|||||||||||||| ||||| || |||||||||||||||||||| ||| |||||| ||||
Sbjct 260 GAGAATTGGGGATTCTTCCAGGTGATCAATCATGGTATTCCTTTAAAC-GTTCTTGAAGA 318
Query 370 TATCAAACAAGGTGTTCGAAGATTTCATGAGGAAGATCCAGAGGTCAAGAAA-CAGTA-T 427
|| ||| | | ||||| || ||||||||||||||||| |||||||||||| | || |
Sbjct 319 GATTAAAGATGCAGTTCGTAGGTTTCATGAGGAAGATCCTGAGGTCAAGAAATTA-TACT 377
Query 428 T-TTGC-TACA-GATTTCAATACAAGATTTGCT-TACAACACCAACTTCGATAT-TCATT 482
| | || | | || ||||| || ||||| | || |||| ||||| ||| | | |
Sbjct 378 TCTCGCGT-GATGACGCCAATAAAAAATTTG-TGTATAACAGTAACTTTGATCTAT-ACG 434
Query 483 ATTCTTCTCC-TATG--AATTGGAAAGACTCTTTCACTTGCTACACTTGTCCTCAAGATC 539
|||||| || | || ||||||| ||| |||||| |||| |||| | | ||| |||||
Sbjct 435 GTTCTTCGCCGTCTGTTAATTGGAGAGATTCTTTCTCTTGTTACA-TAG--CTCCAGATC 491
Query 540 CTCTAAAGCCAGAGGAAATCCCACT-AG-CTTGCAGGGATGTTGTGATTGAATACTCGAA 597
||| | || ||||| || || || || |||||||||||| | || |||||||||||||
Sbjct 492 CTCCAGCTCCTGAGGAGAT-CC-CTGAGACTTGCAGGGATGCTATGTTTGAATACTCGAA 549
Query 598 GCATGTAATGGA-ATTAGGAGGTTTACTCTTCCAACTTCTCTCAGAAGCTTTAGGTTTAG 656
|||||| | || ||||| |||||||| || | ||||||||||||||| ||||||| |
Sbjct 550 GCATGT-GTTGAGTTTAGGTGGTTTACTATTTGAGCTTCTCTCAGAAGCTCTAGGTTT-G 607
Query 657 -ACTCTGAGATTCTTAAGAACATGGATTGTCTCAAGGGTTTGCTTATGCTCTGCCATTAT 715
| || |||| ||||||| ||||||||| || ||| |||||||||| |||||||||||
Sbjct 608 AAATCAGAGACCCTTAAGAGCATGGATTGCCTGAAGACTTTGCTTATGATCTGCCATTAT 667
Query 716 TATCCACCTTGTCCACAACCTGACCTAACTTT-GGGCATAAGTAAACACACCGACAATTC 774
|| ||||||||||||||||||||||||||||| ||| |||| ||||||| | || || ||
Sbjct 668 TACCCACCTTGTCCACAACCTGACCTAACTTTAGGG-ATAACTAAACACTCAGATAACTC 726
Query 775 CTTCATAACAATTCTTCTTCAAGATCAA-ATCGGTGGTCTTCAAGTTCTTCATCAAGATT 833
|||| | || ||||||| ||||| ||| || |||||||||||| || |||||||||| |
Sbjct 727 CTTCCTCACGCTTCTTCTCCAAGA-CAACATTGGTGGTCTTCAAATTATTCATCAAGACT 785
Query 834 CTTGGGTTGATGTAACTCCTGTTCC-TGGAGCTCTTGTCATCAGTATCGGTGATTTCATG 892
||||||| ||||| ||| | | || ||||||||| ||| ||| || || |||||| ||
Sbjct 786 CTTGGGTCGATGTCTCTCATCT-CCATGGAGCTCTCGTCGTCAACATTGGAGATTTCTTG 844
Query 893 CAGCTGATCACAAACGATAAGTTCT-TAAGTATGGAGCATAGGGTACGGGCAAACAGAGA 951
|||||||| || ||||||||||| | ||||| ||||||||||||| | ||||| ||| |
Sbjct 845 CAGCTGATAACGAACGATAAGTT-TGTAAGTGTGGAGCATAGGGTGCTTGCAAATAGACA 903
Query 952 TGGACCGCGGATTTCAGTTGCTTGCTTCGTT-AGCTCGGG-AGTGTTTCCAAATTCCACT 1009
||||| |||||||||| ||| |||| || ||||| | | || |||||||||||
Sbjct 904 AGGACCAAGGATTTCAGTAGCTAGCTTT-TTCAGCTCAAGTA-TGCGTCCAAATTCCAGA 961
Query 1010 GTTTATGGACCGATAAAAGAGCTTCTTTCTGATGAAAACCCTGCAAAGTACAGAGACATC 1069
||||| |||||||| ||||||||| | ||||| ||||||||| |||| |||||||||||
Sbjct 962 GTTTACGGACCGATGAAAGAGCTTGTGTCTGAAGAAAACCCTCCAAAATACAGAGACATA 1021
Query 1070 ACTATA 1075
|| |||
Sbjct 1022 ACCATA 1027
> Ahg917696 jgi|Araly1|917696|Al_scaffold_0008_2447
Length=1095
Score = 499 bits (270), Expect = 2e-140
Identities = 681/871 (78%), Gaps = 62/871 (7%)
Strand=Plus/Plus
Query 311 GAGAATTGGGGATTTTTCCAAGTAATCAATCATGGTATTCCTTT-AACTGTTCTTAAAGA 369
||||||||||| || ||||| || |||||||||||| ||||||| ||| |||||| | ||
Sbjct 253 GAGAATTGGGGGTTCTTCCAGGTGATCAATCATGGTGTTCCTTTAAAC-GTTCTTGAGGA 311
Query 370 TATCAAACAAGGTG-TTCGAAGATTTCATGA-G--GAAGATCCAGAGGTCAAGAAA-CAG 424
|| ||| | || | ||| |||||||| || | |||||||| |||||||||||| ||
Sbjct 312 GATTAAAGATGG-GACTCGTAGATTTCACGAGGAAGAAGATCCTGAGGTCAAGAAATCA- 369
Query 425 TA-T-TTTGCTACAGATTTCA--A--TACAAGATTTGCTTACAACACCAACTTCGATATT 478
|| | | ||| ||||||| | |||| |||||| |||| | || |||||| |
Sbjct 370 TACTACTCGCT--TGATTTCACCACGAACAA-ATTTGCCTACAGTAGTAATTTCGAT-CT 425
Query 479 CAT-TA-TTCTTCTCC-TATG--AATTGGAAAGACTCTTTCACTTGCTACACTTGTCCTC 533
|| || |||||| || | || ||||||| ||| ||| || |||| |||| || |||
Sbjct 426 -ATATAGTTCTTCGCCGTCTGTTAATTGGAGAGATTCTATCTCTTGTTACA--TG-GCTC 481
Query 534 AAGATCCTCTAAAGCCAGAGGAAATCCCACTAG-CTTGCAGGGATGTTGTGATTGAATAC 592
||||||| || || |||||| ||||| || |||||||||||| | |||||||||||
Sbjct 482 CTGATCCTCCAACTCCTGAGGAACTCCCA-GAGACTTGCAGGGATGCTATGATTGAATAC 540
Query 593 TCGAAGCATGTAATGGA-ATTAGGAGGTTTACTCTTCCAACTTCTCTCAGAAGCTTTAGG 651
|| |||||||| | || ||||| | ||| ||||| |||||||||||||| ||||
Sbjct 541 TCAAAGCATGT-GTTGAGTTTAGGTGATTTGCTCTTTGGGCTTCTCTCAGAAGCACTAGG 599
Query 652 TTTAG-ACTCTGAGATTCTTAAGAACATGGATTGTC-TCAAGGGTTTGCTTATGCTCTGC 709
||| | | |||||||| ||||||| ||||| ||| | | ||| ||||||||||| ||||
Sbjct 600 TTT-GAAATCTGAGATCCTTAAGAGCATGGGTTG-CTTGAAGAGTTTGCTTATGATCTGT 657
Query 710 CATTATTATCCACCTTGTCCACAACCTGACCTAACTTT-GGGCATAAGTAAACACACCGA 768
|||||||| ||||||||||||||||||||||||||||| ||| |||| |||||| | ||
Sbjct 658 CATTATTACCCACCTTGTCCACAACCTGACCTAACTTTAGGG-ATAACTAAACATTCAGA 716
Query 769 CAATTCCTTCATAACAATTCTTCTTCAAGATCAA-ATCGGTGGTCTTCAAGTTCTTCATC 827
||| || ||| | || ||||||||||||| ||| || |||||||||||| |||||||||
Sbjct 717 CAACTCTTTCCTCACGGTTCTTCTTCAAGA-CAACATTGGTGGTCTTCAAATTCTTCATC 775
Query 828 AAGATTCTTGGGTTGATGTAACTCCTGTTCCTGGAGCTCTTGTCA-TCAGTATCGGTGAT 886
|||| |||||||||||||| ||||| ||||||||||||| || | ||| ||||| |||
Sbjct 776 AAGACTCTTGGGTTGATGTCTCTCCTCTTCCTGGAGCTCTGGT-AGTCAACATCGGAGAT 834
Query 887 TTCATGCAGCTGATCACAAACGATAAGTTCT-TAAGTATGGAGCATAGGGTACGGGC-AA 944
||| |||||||||| || ||||||||||| | ||||| ||||||||||||| | || ||
Sbjct 835 TTCTTGCAGCTGATAACCAACGATAAGTT-TGTAAGTGTGGAGCATAGGGTGCTTGCGAA 893
Query 945 -ACAGAGATGGACCGCGGATTTCAGTTGCTTGCTTCGTT-AGCTCGGGAGTGTT--TCCA 1000
||| || ||||| |||||||||| || |||| || ||||| ||| | | |
Sbjct 894 TACAC-GA-GGACCAAGGATTTCAGTAGCGAGCTTT-TTCAGCTCA--AGTATACGTG-A 947
Query 1001 -AATTCCACTGTTTATGGACCGATAAAAGAGCTTCTTTCTGATGAAAACCCTGCAAAGTA 1059
||||| || ||||||||||| || ||||||||| | ||||| ||||||||| |||| ||
Sbjct 948 GAATTCAACAGTTTATGGACCAATGAAAGAGCTTGTGTCTGAAGAAAACCCTCCAAAATA 1007
Query 1060 CAGAGACATCA-CTATACCAGAATACACTGTAGGATACCT-A-GCAAGCATCTTCGATGG 1116
|||||| | || || || ||||||| | | ||||||| | | | ||| |||| |||||
Sbjct 1008 CAGAGATA-CAACTTTAAGAGAATACTCAGAAGGATACTTTAAGAAAGG-TCTT-GATGG 1064
Query 1117 AAAATCGCATTTGTCTAAGTTCCGGATATGA 1147
|| ||||||| |||| || ||| ||||||||
Sbjct 1065 AACATCGCATCTGTCGAATTTCAGGATATGA 1095
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47463031665
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5