BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G43450.1
Length=1368
Score E
Sequences producing significant alignments: (Bits) Value
Ahg948815 jgi|Araly1|948815|scaffold_800702.1 1208 0.0
Ahg356742 jgi|Araly1|356742|fgenesh1_pg.C_scaffold_8000529 830 0.0
> Ahg948815 jgi|Araly1|948815|scaffold_800702.1
Length=1141
Score = 1208 bits (654), Expect = 0.0
Identities = 983/1139 (86%), Gaps = 33/1139 (3%)
Strand=Plus/Plus
Query 69 aaaaaagaaaaaaacatgacagagaattctgaaaaaaTCGATCGTTTAAACGATCTCACG 128
|||||| | || | ||||||||| || || | | |||||| |||||| ||||| |||| |
Sbjct 9 AAAAAATAGAACATCATGACAGAAAAATCCGGAGAAATCGGTCGTTTGAACGAGCTCAAG 68
Query 129 ACTTTTATCTCGACGAAGACAGGAGTGAAAGGACTCGTCGATGCCGAAATAACCGAAGTT 188
||||| ||||| |||| |||||||| ||||||||||||||| || ||||||||||||||
Sbjct 69 GCTTTTGTCTCGTCGAAAACAGGAGTCAAAGGACTCGTCGATACCAAAATAACCGAAGTT 128
Query 189 CCTAGCATGTTTCATGTCCCTTCTTCTA-T--TTTATCAAACAACAGACCTTCTGATATC 245
||| | || ||||||||||||||||||| | | |||| ||||||| |||||||||||||
Sbjct 129 CCTCGAATCTTTCATGTCCCTTCTTCTACTACTATATCTAACAACAAACCTTCTGATATC 188
Query 246 TCCGGCTTAAACCTCACCGTCCCAATCATCGACCTCGGAGATCGTAACACATC-T-T-CA 302
||| ||||||||||||| |||||||||||||||||||||||| | |||| ||| | | ||
Sbjct 189 TCCAGCTTAAACCTCACTGTCCCAATCATCGACCTCGGAGATGGCAACATATCTTCTACA 248
Query 303 AGAAACGTTGTCATTTCGAAGATCAAAGACGCAGCTGAGAATTGGGGATTTTTCCAAGTG 362
||||||||| || |||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 249 AGAAACGTTCTCGTTTCGAAGATTAAAGAAGCAGCTGAGAATTGGGGATTTTTCCAAGTG 308
Query 363 ATCAATCATGATGTTCCTTTAACTGTTCTTGAAGAGATCAAA-GAGAGTGTTCGAAGGTT 421
|||||||||| | | ||||| ||| ||||||||||||| ||| || | |||||||| ||
Sbjct 309 ATCAATCATGGTATACCTTTGACTATTCTTGAAGAGATTAAACAAG-GAGTTCGAAGATT 367
Query 422 TCATGAACAAGATCCAGTTG-TCAAGAACCAATATCTTCCTACCGATAACAACAAGAGAT 480
||||||| ||||||||| | ||||||| || ||| || ||| ||| ||| || ||||
Sbjct 368 TCATGAAGAAGATCCAG-AGATCAAGAAACAGTATTTTGCTAAAGATTTCAATAAAAGAT 426
Query 481 TTGTTTATAACAATGATTTCGATCTCTATCATTCTTCTCCTTTGAATTGGAGAGACTCTT 540
||| ||| |||| | |||||| | ||||||||||||||| ||||||||||||||||||
Sbjct 427 TTGCTTACAACACCAACTTCGATATTTATCATTCTTCTCCTATGAATTGGAGAGACTCTT 486
Query 541 TCACTTGTTATA--T-TGCTCCAGATCCTCCGAATCCAGAGGAAATCCCACTAGCTTGCA 597
|||||||||| | | || || |||||||| || |||||||||||||||||||||||||
Sbjct 487 TCACTTGTTACACTTGTGTTCAAGATCCTCTAAAGCCAGAGGAAATCCCACTAGCTTGCA 546
Query 598 -GGAGTGCGGTGATCGAATACACGAAGCATGTAATGGAATTAGGAGCTGTGCTCTTCCAA 656
||| || ||||| |||||| |||||||||||||||||||||||| | | |||||||||
Sbjct 547 GGGA-TGTTGTGATTGAATACTCGAAGCATGTAATGGAATTAGGAGGTTTACTCTTCCAA 605
Query 657 CTTCTCTCAGAAGCTTTAGGTTTAGACTCTGAGA-CACTTAAGAGGATTGATTGTCTTAA 715
|||||||||||||||||||||||||||||||||| | ||||||| || |||||||| ||
Sbjct 606 CTTCTCTCAGAAGCTTTAGGTTTAGACTCTGAGATC-CTTAAGAACATGGATTGTCTCAA 664
Query 716 GGGTTTGTTTATGCTCTGCCATTACTATCCACCTTGCCCACAACCTGACCTAACTTTAGG 775
||||||| ||||||||||||||||||||||||||||||| || |||||||||||||| ||
Sbjct 665 GGGTTTGCTTATGCTCTGCCATTACTATCCACCTTGCCCTCAGCCTGACCTAACTTTGGG 724
Query 776 TATAAGTAAACACACCGACAACTCTTTCCTCACGCTTCTTCTTCAAGACCAAATCGGTGG 835
||||||||||||||||||||||||||| | || |||||||||||||||||||||||||
Sbjct 725 CATAAGTAAACACACCGACAACTCTTTCATAACAATTCTTCTTCAAGACCAAATCGGTGG 784
Query 836 TCTTCAAGTTCTTCATGAAGATTATTGGGTCGATGTCCCTCCTGTACCTGGAGCTCTTGT 895
|||||||||||||||| |||||| |||||| ||||| ||||||| ||||||||||||||
Sbjct 785 TCTTCAAGTTCTTCATCAAGATTCTTGGGTAGATGTAACTCCTGTTCCTGGAGCTCTTGT 844
Query 896 TGTCAACATTGGTGATTTCATGCAGCTGATAACGAACGATAAGTTCTTGAGCGTGGAGCA 955
||| ||| |||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 845 CATCAGCATCGGTGATTTCATGCAGCTGATCACGAACGATAAGTTCTTAAGCGTGGAGCA 904
Query 956 TAGGGTACGACCGAACAAAGATAG-ACCGCGGATTTCAGTTGCGTGCTTCT-TTAGCTCG 1013
||||||||| | |||| ||| || |||||||||||||||||||||||| | ||||||||
Sbjct 905 TAGGGTACGTGCAAACAGAGA-AGGACCGCGGATTTCAGTTGCGTGCTT-TGTTAGCTCG 962
Query 1014 --AGTCTTTCTCCAAATTCCACGGTTTATGGACCGATTAAAGATCTT-TTGTCTGATGAA 1070
||| |||| | |||||||||||||||||||||||| ||||| ||| || |||||||||
Sbjct 963 GGAGTGTTTC-C-AAATTCCACGGTTTATGGACCGATAAAAGAGCTTATT-TCTGATGAA 1019
Query 1071 AACCCTGCTAAGTACAAAGATATCACCATACCAGAGTACACTGCAGGATTTCTTGCG-AG 1129
|||||||| ||||||| ||| ||||| |||||||| ||||||| ||||| |||||| |
Sbjct 1020 AACCCTGCAAAGTACAGAGACATCACTATACCAGAATACACTGTAGGATACCTTGCGGA- 1078
Query 1130 CATTTTTGATG-AAAAGTCGTATTTGACTAA-TTACATGATATGAAGAAAATACTTGTC 1186
||| ||||||| |||| ||| ||||| |||| || || ||||||||||||| |||||||
Sbjct 1079 CATCTTTGATGGAAAA-TCGCATTTGTCTAAGTT-CAGGATATGAAGAAAAGACTTGTC 1135
> Ahg356742 jgi|Araly1|356742|fgenesh1_pg.C_scaffold_8000529
Length=585
Score = 830 bits (449), Expect = 0.0
Identities = 538/581 (93%), Gaps = 6/581 (1%)
Strand=Plus/Plus
Query 99 gaaaaaaTCGATCGTTTAAACGATCTCAC-GACTTTTATCTCGACGAAGACAGGAGTGAA 157
||| ||||||||||| | ||||| || || || ||||||||| || ||||||||||| ||
Sbjct 7 GAAGAAATCGATCGTGTGAACGAACTTACAGA-TTTTATCTCAACAAAGACAGGAGTCAA 65
Query 158 AGGACTCGTCGATGCCGAAATAACCGAAGTTCCTAGCATGTTTCATGTCCCTTCTTCTAT 217
|||||||||||||||||| |||||| |||||||| | || ||||||||||||||||| |
Sbjct 66 AGGACTCGTCGATGCCGATATAACCAAAGTTCCTCGAATCTTTCATGTCCCTTCTTCAAC 125
Query 218 TTTATCAAACAACAGACCTTCTGATATCTCCGGCTTAAACCTCACCGTCCCAATCATCGA 277
|||||| ||||||||||||||||||||| ||||||||||||| |||||||||||||||||
Sbjct 126 TTTATCTAACAACAGACCTTCTGATATCACCGGCTTAAACCTTACCGTCCCAATCATCGA 185
Query 278 CCTCGGAGATCGTAACACATCTTCAAGAAACGTTGTCATTTCGAAGATCAAAGACGCAGC 337
|||||||||| ||||||||||| |||||||||||||| |||||||||| |||||||||||
Sbjct 186 CCTCGGAGATAGTAACACATCTGCAAGAAACGTTGTCGTTTCGAAGATTAAAGACGCAGC 245
Query 338 TGAGAATTGGGGATTTTTCCAAGTGATCAATCATGATGTTCCTTTAACTGTTCTTGAAGA 397
|||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 246 TGAGAAGTGGGGATTTTTCCAAGTGATCAATCATGGTGTTCCTTTAACTGTTCTTGAAGA 305
Query 398 GATCAAAGAGAGTGTTCGAAGGTTTCATGAACAAGATCCAGTTGTCAAGAACCAATATCT 457
||||||||| ||||||||||||||||||||| ||||||||| |||||||| ||||||||
Sbjct 306 GATCAAAGAAAGTGTTCGAAGGTTTCATGAAGAAGATCCAGAGGTCAAGAATCAATATCT 365
Query 458 TCCTACCGATA--A-CAACAAGAGATTTGTTTATAACAATGATTTCGATCTCTATCATTC 514
||||||||||| | ||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct 366 TCCTACCGATATCATCAACAAGAGATTTGTTTATAACAATAATTTCGATCTCTACCATTC 425
Query 515 TTCTCCTTTGAATTGGAGAGACTCTTTCACTTGTTATATTGCTCCAGATCCTCCGAATCC 574
||||||| ||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 426 TTCTCCTATGAATTGGAGAGATTCTTTCACTTGTTATATTGCTCCAGATCCTCCAAATCC 485
Query 575 AGAGGAAATCCCACTAGCTTGCAGGAGTGCGGTGATCGAATACACGAAGCATGTAATGGA 634
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 486 AGAGGAAATTCCACTAGCTTGCAGGAGTGCGGTGATCGAATACACGAAGCATGTAATGGA 545
Query 635 ATTAGGAGCTGTGCTCTTCCAACTTCTCTCAGAAGCTTTAG 675
||| |||||| |||||||||||||||||||||||||| |||
Sbjct 546 ATTGGGAGCT-TGCTCTTCCAACTTCTCTCAGAAGCTCTAG 585
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51199077531
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5