BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G43460.1
Length=858
Score E
Sequences producing significant alignments: (Bits) Value
Ahg497403 jgi|Araly1|497403|fgenesh2_kg.349__1__AT5G43460.1 1085 0.0
Ahg919109 jgi|Araly1|919109|scaffold_100390.1 429 2e-119
> Ahg497403 jgi|Araly1|497403|fgenesh2_kg.349__1__AT5G43460.1
Length=827
Score = 1085 bits (587), Expect = 0.0
Identities = 733/801 (92%), Gaps = 20/801 (2%)
Strand=Plus/Plus
Query 5 TGTTAATAAATAAACCTAAACCAATAGAACCGCAGT-TTTTCCTCCTCGCCGAAACGAAG 63
||| ||||||||||||||||||| |||||||| | | |||||||||||| | |||||
Sbjct 1 TGTCAATAAATAAACCTAAACCAGTAGAACCGAACTCTTTTCCTCCTCG-C----CGAAG 55
Query 64 AAGATTCTCCTTCTCTCCGTCAGACAAATCTACGAACAAGCGAGCCTGAGCTTAAGACCA 123
|||||||||||| |||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 56 AAGATTCTCCTTGTCTCCGTCAGACAAATCTACGAACAAGCGAGCCTGATCTCAAGACCA 115
Query 124 AACTCATAGAGATGGGTTTCTTCTCTTTTCTTGGAAGAGTTCTCTTCGCTTCTCTCTTTA 183
||| || |||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 116 AACACAGAGAGATGGGTTTCTTCTCGTTTCTTGGAAGAGTTCTCTTCGCTTCTCTCTTTA 175
Query 184 TCCTCTCCGCTTGGCAAATGTTCAATGATGGTGGTCCTGCAGCTAAAGAATTGGCTCCAA 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 176 TCCTCTCCGCTTGGCAAATGTTCAATGATGGTGGTCCTGCAGCTAAAGAATTGGCTCCAA 235
Query 244 AGCTTGATTTGGTTAAGGCACATTTATCTTCTAGATTAGGAGTAACATTGCCCAAAATAG 303
|||||||||||| ||||||||| |||||||||||||||| |||||||||||||||||||
Sbjct 236 AGCTTGATTTGGCCAAGGCACATCTATCTTCTAGATTAGGGGTAACATTGCCCAAAATAG 295
Query 304 AGGTGAGACAAGTCGTTGCTACTATTATTGCCCTGAAAGGAGTCGGAGGCTTACTCTTTG 363
||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 296 AGGTGAGACAAGTTGTTGTTACTATTATTGCCCTGAAAGGAGTCGGAGGCTTACTCTTTG 355
Query 364 TTATCGGAAACACCTTCGGTGCTTATCTTCTGGCTTCCTACTTGGTGGTTTTCGGTCCTA 423
|||||||||||| ||||||||||||||||||||||| ||||||||| ||| |||||||||
Sbjct 356 TTATCGGAAACATCTTCGGTGCTTATCTTCTGGCTTTCTACTTGGTTGTTGTCGGTCCTA 415
Query 424 TTCTCTATGATTTCTACAACTACGGACCTCAGGAACGTCATTTCTCTCTTCTGTTGACAG 483
|||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 416 TTCTGTATGATTTCTACAACTACAAACCTCAGGAACGTCATTTCTCTCTTCTGTTGACAG 475
Query 484 AGTTCTTGCAGAGCGTTGCACTCTTTGGAGCGTTACTCTTCTTTATCGGAATGAAGAACT 543
||||||| ||||| |||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 476 AGTTCTTACAGAGTATTGCACTCTTTGGAGCATTACTCTTCTTTATTGGAATGAAGAACT 535
Query 544 CGACACCCGCCAAGAAGAATTTGAAGAAGAGGACACCTAAGCCGAAAGCTGCCTAGTATC 603
|| ||||| |||||| |||| ||||||||||||||||||||||||||||||| || ||||
Sbjct 536 CGTCACCCTCCAAGAGGAATCTGAAGAAGAGGACACCTAAGCCGAAAGCTGCTTAATATC 595
Query 604 AATATTAGTTTTCTTCTGGTTTTGCCATGAGCAA-G--CAATACCTT-GCcttttccttt 659
|||||||||| |||| | || | | | | || | ||||||||| | ||||||||||
Sbjct 596 AATATTAGTTATCTT-T--TTAT-CAAAAAAAAACGAGCAATACCTTTGGCTTTTCCTTT 651
Query 660 tttcccgacaaaatctttccttagaacttttgttttctttctgttttAGGATTCTTAGAT 719
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 652 TTTCCCGACAAAATCTTTCCTTAGAACATTGGTTTTCTTTCTGTTTTAGGATTCTTAGAT 711
Query 720 TAGCTCATGATCTTATACTAATACTGTGATTTGATATTGGGGATCTTGAAGTTTTGGTTT 779
||||||||||||||||||| ||||||||||||||||| ||||||||||||| |||
Sbjct 712 TAGCTCATGATCTTATACT------GTGATTTGATATTGGGGTTCTTGAAGTTTTGATTT 765
Query 780 GTTGAAACTGGAACCATGCAG 800
||||||||| ||||||||||
Sbjct 766 GTTGAAACTTCAACCATGCAG 786
> Ahg919109 jgi|Araly1|919109|scaffold_100390.1
Length=521
Score = 429 bits (232), Expect = 2e-119
Identities = 406/486 (84%), Gaps = 27/486 (6%)
Strand=Plus/Plus
Query 135 ATGGGTTTCTTCTCTTTTCTTGGAAGAGTTCTCTTCGCTTC-TCTCTTTATCCTCTCCGC 193
||||||||||||||||||||||||||||||||||||||||| | | || |||||||||||
Sbjct 21 ATGGGTTTCTTCTCTTTTCTTGGAAGAGTTCTCTTCGCTTCGT-TATTCATCCTCTCCGC 79
Query 194 TTGGCAAATGTTCAATGA-T--GG---TG--G-T---CCTGCAGCTAAAGAATTGGCTCC 241
|||||||||||||||||| | || || | | || ||||| ||||| || |||||
Sbjct 80 TTGGCAAATGTTCAATGACTTTGGAACTGACGGTGGTCCAGCAGCCAAAGAGTTAGCTCC 139
Query 242 AAAGCTTGATTTGGTTAAGGCACATTTATCTTCTAGATTAGGAGTAACATTGCCCAAAAT 301
|||||||||| || || |||||| | ||||| | ||| |||||| |||||||||| |
Sbjct 140 AAAGCTTGATCTGAACAAAGCACATCTCTCTTCCATATTTGGAGTAGCATTGCCCAACTT 199
Query 302 AGAGGTGAGACAAGTCGT-TGCTACTATTATTGCCCTGAAAGGAGTCGGAGGCTTACTCT 360
|||||||| ||||||||| || |||||| |||| ||||||||| |||||||||||||||
Sbjct 200 AGAGGTGAAACAAGTCGTGTGG-ACTATTGTTGCTCTGAAAGGACTCGGAGGCTTACTCT 258
Query 361 TTGTTATCGGAAACACCTTCGGTGCTTATCTTCTGGCT-TCCTACTTGGTGGTTTTCGGT 419
|||||||||| |||| ||||||||| |||||||||||| ||| ||||||||||| || ||
Sbjct 259 TTGTTATCGGCAACATCTTCGGTGCCTATCTTCTGGCTGTCC-ACTTGGTGGTTGTCAGT 317
Query 420 CCTATTCTCTATGATTTCTACAACTACGGACCTC-AGGAACGTCATTTCTCTCTTCTGTT 478
|| ||| | ||||||||||||||||||||||| | |||| || || ||||||||||| ||
Sbjct 318 CCCATTTTATATGATTTCTACAACTACGGACC-CGAGGACCGCCAATTCTCTCTTCTATT 376
Query 479 GACAGAGTTCTTGCAGAGCGTTGCACT-CTTTGGAGCGTTACTCTTCTTTATCGGAATGA 537
||| || ||||| ||||| |||||||| || || || || || || |||||||||||||
Sbjct 377 GACTGAATTCTTACAGAGTGTTGCACTTCTCGGG-GCTTTGCTATTTTTTATCGGAATGA 435
Query 538 AGAACTCGAC-AC--CCGCCAAGAAGAATT-TGAAGAAGAGGACACCTAAGCCGAAAGCT 593
|||| ||||| || || |||||| || || ||||||||||||| || ||||| ||||||
Sbjct 436 AGAATTCGACGACGACCTCCAAGAGGA-TTCTGAAGAAGAGGACTCCCAAGCCTAAAGCT 494
Query 594 GCCTAG 599
|| |||
Sbjct 495 GCTTAG 500
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31756389861
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5