BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G43500.1
Length=2187
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494650 jgi|Araly1|494650|fgenesh2_kg.8__466__AT5G43500.1 2817 0.0
> Ahg494650 jgi|Araly1|494650|fgenesh2_kg.8__466__AT5G43500.1
Length=2018
Score = 2817 bits (1525), Expect = 0.0
Identities = 1733/1834 (94%), Gaps = 12/1834 (1%)
Strand=Plus/Plus
Query 225 CACCATTTTCATGGCAAAACCAAAATC-CAATTCTCATCTCTCGTGGCAGGATTACTTGA 283
|||||||||||||||||| || ||| | ||||||| ||||||||||||||||||||||||
Sbjct 146 CACCATTTTCATGGCAAACCCTAAA-CGCAATTCTTATCTCTCGTGGCAGGATTACTTGA 204
Query 284 AAACTGTTGCCCCCACTCAGATTTTGTCTGAACGAGGAGCTAATCTCGTTGTCATCAACT 343
||||||||||||| ||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 205 AAACTGTTGCCCCGACTCAGATTTTGTCTGAGCGTGGAGCTAATCTCGTTGTCATCAACT 264
Query 344 TAGGGTCTGCTAATGTAAGAGTAGGATTGGCTATGGATGAGAAACCTTTCAATGTTCCTA 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 265 TAGGGTCTGCTAATGTAAGAGTAGGATTGGCTATGGATGAGAAACCTTTCAATGTCCCTA 324
Query 404 ATTGTATTGCAAGATACATTACACAATCTGGGAAACCAACTGTTGTTGATCAGATGCTTA 463
|||||||||| |||||||| |||||| |||||||||||||||||||||||||||||||||
Sbjct 325 ATTGTATTGCTAGATACATGACACAAACTGGGAAACCAACTGTTGTTGATCAGATGCTTA 384
Query 464 ACACTGAGGTCACTACTAATCAACATGTTGACCGTGAGAGAGCTTATAATTCTGCGGCAT 523
||||| |||||||||| ||||||||||||||||||||||||||||||||| |||||||||
Sbjct 385 ACACTCAGGTCACTACGAATCAACATGTTGACCGTGAGAGAGCTTATAATACTGCGGCAT 444
Query 524 CGCTGTTGAAGATACTGTTCCTGGATGAAAGTTCTTCTTCTGGCTCTGCATCTCGCAAGA 583
||||||||||||||| ||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 445 CGCTGTTGAAGATACCGTTTCTGGATGAAAGTTCTTCTTCTGGCTCTGCATCACGCAAGA 504
Query 584 TGGGGAGGATCGACGGATACAATCAAGCGAGTACGATAAAGAAAGATTCAGTCTTTACTT 643
|||||||||| || |||| ||||||||||||||||| |||||||||| ||||||||||||
Sbjct 505 TGGGGAGGATTGATGGATTCAATCAAGCGAGTACGACAAAGAAAGATGCAGTCTTTACTT 564
Query 644 GGACTGATGTGTATGAGGATGAGAAAATTTCTCTTGCCTCACCAGCAGAAACTTCTCCTG 703
||||||||||||||||||||||| | ||||||||||| ||| |||||||||||||| |||
Sbjct 565 GGACTGATGTGTATGAGGATGAGCATATTTCTCTTGCTTCATCAGCAGAAACTTCTGCTG 624
Query 704 ATAAAGGTGATGCTAGTGCATCTGA-AGCTGTTCCTGATGTTACTGACTCTAAAGATACT 762
|||||||||| || ||||||||| | |||| |||||||||||||||||||||||| |||
Sbjct 625 ATAAAGGTGAGGCCAGTGCATCT-ATTGCTGCTCCTGATGTTACTGACTCTAAAGACACT 683
Query 763 AGTGAGAGTAAACGCAAGTATAGGAAAATGATTTTTGGTGA-AGAAGCTTTGAAAATATC 821
||||||||||| |||||||| ||||| | |||||||||| | ||||||||||| |||||
Sbjct 684 AGTGAGAGTAAGCGCAAGTACAGGAAGACGATTTTTGGT-AGAGAAGCTTTGACGATATC 742
Query 822 GCCAAAAGAGCCATATTGTTTATACCATCCTATTCGGAGAGGTCACTTCAATGTTTCGCC 881
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 743 ACCAAACGAGCCATATTGTTTATACCATCCTATTCGGAGAGGTCACTTCAATGTTTCGCC 802
Query 882 ACATTATTCAGCGCAACGGGTTTGTGAGGACTTAACTGCTATCTTGGACTGGATTTTATT 941
||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| ||
Sbjct 803 ACATTATTCAGCGCAACGGGTTTTTGAGGACTTGACTGCTATCTTGGACTGGATTTTGTT 862
Query 942 AGAGAAACTTCATATAACTCACAAG-GAGAGATTCTCTTTTCATGCTGTTATTGTTGTCC 1000
|||||||||||||||||||||| || |||||| ||| ||||||||||||||||||||||
Sbjct 863 AGAGAAACTTCATATAACTCAC-AGAGAGAGAAACTCGTTTCATGCTGTTATTGTTGTCC 921
Query 1001 CAGAAACATTTGACACCCGCGAAATAAAGGAAATGCTAACTATTGTGTTGGGAGAGCTAT 1060
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 922 CAGAAACATTTGACACCCGCGAAATAAAGGAAATGCTAACTATTGTGTTGGGAGAGCTAC 981
Query 1061 ACTTTAACTCAGCAGTTGTCCACCAAGAAGGTCTATCGGCCGTTTTTGGGAATGGTTTGA 1120
|||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 982 ACTTTAACTCAGCAGTCGTCCACCAAGAAGGTCTATCCGCCGTTTTTGGGAATGGTTTGT 1041
Query 1121 CAACAGCTTGTATTGTGAATATAGGAGCCCAGACAAGTACAGTAGTTTGTGTCGAGGATG 1180
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1042 CAACAGCTTGTATTGTGAATATAGGAGCCCAGACAAGTACAGTTGTTTGTGTCGAGGATG 1101
Query 1181 GGGTCTCATTGCCAAATACTGAAAAGATTTTACCTTTTGGAGGAGAGGATATATGTAGAT 1240
| |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 1102 GAGTCTCATTGCCAAATACTGAAAAGATTTTACCATTTGGAGGAGAGGACATATGTAGAT 1161
Query 1241 GCCTTCTATGGATTCAGAGGCATTACCAAAAGTGGCCACAAATCAACACAGATGTTTTGG 1300
|||||||||||||||| |||||| |||||||||||||||||||| |||||||||||||||
Sbjct 1162 GCCTTCTATGGATTCAAAGGCATAACCAAAAGTGGCCACAAATCCACACAGATGTTTTGG 1221
Query 1301 CAAAGCCAATCGATATGCTGATGCTTAATCAACTTAAGGAGTCATTTTGTGAAATTAGAG 1360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1222 CAAAGCCAATCGATATGCTGATGCTTAATCAACTTAAGGAGTCATTTTGTGAAATTACAG 1281
Query 1361 CAGGAGAACTTGAAACTGTTGCAACGGTTCATTCTTATGAGGAAGGCATGCCAGCTGTGC 1420
||||||||||||||||||||||||| |||||||||||||| || ||||||||||||||||
Sbjct 1282 CAGGAGAACTTGAAACTGTTGCAACTGTTCATTCTTATGAAGATGGCATGCCAGCTGTGC 1341
Query 1421 CTCACAAGACAAATCTCACCTCCCTTAACGTTCCACCAATGGGTCTGTTTTATCCTAACC 1480
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1342 CTCACAAGACAAATCTCACCTCACTTAACGTTCCACCAATGGGTCTGTTTTATCCTAACC 1401
Query 1481 TT-TTGGTCCCTGAAATATTTCCCCAGCCACCACGTCAATGGTTTCAAGACTACGAGAAT 1539
|| ||| |||||||| | |||||||||||||||||||||||||| |||||| ||||||||
Sbjct 1402 TTCTTG-TCCCTGAAGTGTTTCCCCAGCCACCACGTCAATGGTTCCAAGACCACGAGAAT 1460
Query 1540 ATGTTGGAAGACACTTGGAACATGGACTTTGGAGGTGGTGGTAACATGGGATTACCAATG 1599
||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1461 ATGCTGGAAGACACTTGGAACATGGACTTTGGAGGTGGTGGTAATATGGGATTACCAATG 1520
Query 1600 TGGGATAGTTTTGCATTTTCGCCTTCAAAACCAAAGAAAGAAGAGAAGATTGGTCTCGCT 1659
||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1521 TGGGATAATTTTGCATTTTCCCCTTCAAAACCAAAGAAAGAAGAGAAGATTGGTCTCGCT 1580
Query 1660 GAAGCCATTACAAGCAGCATTCTCTCTGCTGGACGCATAGACCTTAGACGGAAGCTTTTC 1719
||||||||||||||||||||| ||||||||||||||||||||||||| || |||||||||
Sbjct 1581 GAAGCCATTACAAGCAGCATTTTCTCTGCTGGACGCATAGACCTTAGGCGAAAGCTTTTC 1640
Query 1720 TCCAGCATTCAATTGATTGGTGGTGCTGGTTTGACGAAAGGTCTTGTAGCGGCAGTGGAA 1779
|||||||||||| |||||||||||||||||||||| |||||||||||| | || ||||||
Sbjct 1641 TCCAGCATTCAACTGATTGGTGGTGCTGGTTTGACTAAAGGTCTTGTATCAGCTGTGGAA 1700
Query 1780 GAAAGAGTTCTTCACGCGATACCTCCAACTGAAGCCATTGATACAGTGCAGGTTCTGCCA 1839
||||||||||||||||||||||||||||| ||||||||||| || || ||||||||||||
Sbjct 1701 GAAAGAGTTCTTCACGCGATACCTCCAACCGAAGCCATTGACACTGTACAGGTTCTGCCA 1760
Query 1840 TCAAGAACGGAGCCACAATTCGTAACTTGGAAAGGAGGAGCGATATTGGGAATTCTGGAC 1899
|||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1761 TCAAGAACAGAGCCACCATTCGTAACTTGGAAAGGAGGAGCGATATTGGGAATTCTGGAC 1820
Query 1900 TTTGGGAGGGAGGCTTGGATTGAGAGACATCAATGGATGGTAAATGGGGTTAATAAAGGT 1959
|||||||||||||||||||||||||||| ||||||||||| ||||||| |||||| |||
Sbjct 1821 TTTGGGAGGGAGGCTTGGATTGAGAGACCTCAATGGATGGAAAATGGGATTAATATAGGC 1880
Query 1960 GGTCTAAAGAAGTACAAAGACTCTTATCACCTTCAAGGTCAAGCAATGTACTTCATCAAC 2019
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1881 GGTCTAAAGAAGTACAAAGACTCTTATCACCTTCAAGGTCAAGCAATGTACTTCATCAAC 1940
Query 2020 CCCTAGTTTCTGTCTATATCTTAAGCTTTCTCTG 2053
||||||| ||| |||||||||||||||||||||
Sbjct 1941 CCCTAGTCTCT--CTATATCTTAAGCTTTCTCTG 1972
Score = 111 bits (60), Expect = 2e-23
Identities = 75/82 (91%), Gaps = 2/82 (2%)
Strand=Plus/Plus
Query 50 AAGCGGAAAGCGGACCTCCGACGAAATTTCCAAGGCT-ACGACGGGCCGCGCGCGGGTTA 108
||||||||||||||||||||||||||||| |||| || |||||| | ||| ||||| |||
Sbjct 2 AAGCGGAAAGCGGACCTCCGACGAAATTTTCAAG-CTTACGACGCGACGCCCGCGGATTA 60
Query 109 TTTGGGCTTTCTCAGTTCAAAC 130
||||||||||||||||||||||
Sbjct 61 TTTGGGCTTTCTCAGTTCAAAC 82
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82313019445
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5