BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G43520.1
Length=753
Score E
Sequences producing significant alignments: (Bits) Value
Ahg915887 jgi|Araly1|915887|Al_scaffold_0008_638 1085 0.0
> Ahg915887 jgi|Araly1|915887|Al_scaffold_0008_638
Length=720
Score = 1085 bits (587), Expect = 0.0
Identities = 673/713 (94%), Gaps = 12/713 (2%)
Strand=Plus/Plus
Query 51 GCACCCAAGTCACAACCATCCGCTGCGTGTCTTTAAAGCCAAAGAAGAGGATGAGACCGC 110
|||| | |||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 10 GCACGCGAGTCACAACCATCCAC-CCGTGTCTTTAAAGCCAAAGAAGAGGATGAGACCGC 68
Query 111 ATGCTCTGGCTGCGAGCTAGAGCTGACCGGGCAAGCTTTCAAATGTATAAAGTCAGAGTG 170
|||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| ||
Sbjct 69 ATGCTCTGGCTGCGAGCTAGAGCTGACCGGGCAAGCTTTCAAGTGTACAAAGTCAGAATG 128
Query 171 CGATTACTTCTTACACAAGTCATGTTTCGACCTTCCTAGTGAGACCAATAACAAGTCTCA 230
|||||||||||| |||||||||||||||||||| |||| |||||||||| ||||||||||
Sbjct 129 CGATTACTTCTTGCACAAGTCATGTTTCGACCTACCTAATGAGACCAATCACAAGTCTCA 188
Query 231 CCAGGACCACCCTCTGACCTTGCTTCATTCCCCACCAGATGATCGGTCTGTCTACACGTG 290
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 189 CCAGGACCACCCTCTGACCTTGCTTCATTCCCCACCAGATGATCGGTCTGTTTACACGTG 248
Query 291 TGACGCGTGTGACCAATACGGATCTGGATTTTCTTACCATTGCTCAAACTGCAACTACAG 350
|||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||
Sbjct 249 TGACGCGTGTGACCAATACGGATCTGGATTCACTTACCATTTCTCAAACTGCAACTACAA 308
Query 351 TCTTCATGTGGGATGTGCGTTTATCCCTGAAACCGTAGATCGTGAAGATCATGAACATCC 410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 309 TCTTCATGTGGGATGTGCGTTTATCCCTGAAACCGTAGATCGTGAAGATCATGAACATCC 368
Query 411 ACTCACTCTTCTTTATTGCACACCGTGTAAAGGACGTGAAGACACG-TACTTCACTTGCA 469
||||||||||||||||||||||||||||||||| |||||||||||| | |||||||||||
Sbjct 369 ACTCACTCTTCTTTATTGCACACCGTGTAAAGGTCGTGAAGACACGAT-CTTCACTTGCA 427
Query 470 GCGCTTGTGATGAAACTATTTCAGAAGATCTATGGATGTATTACTGTAAGGATTGTGACT 529
||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 428 GCGTTTGTGATGAAACTATTTCAGAAGATCTATGGATGTATTACTGTAAGGAATGTGACT 487
Query 530 ATGGAACACATCTACACTCATGTGCGGCATATgaagaccaagg-------gaa-ag-aag 580
||||||||||| |||| |||||||||||||||||||| |||| ||| || |||
Sbjct 488 ATGGAACACATGTACATTCATGTGCGGCATATGAAGATCAAGAATCAAATGAAGAGGAAG 547
Query 581 aagaagatgaagacgaagaaggagaagCGAGTTCTCCAGCTTCTAGGATAAAGTCGTTGA 640
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 548 AAGAAGAAGAAGACGAAGAAGGAGAAGCGAGTTCTCCAGCTTCTAGGATAAAGTCTTTGA 607
Query 641 TGAAGGCGCAAGACGAGATGGCGGCTATGCAGCTAGAGGCACGTATTGAGAATGATGCGA 700
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 608 TGAAGGCGCAAGACGAGATGGCGGCTATGCAGCTAGAGGCACGTATTGCGAATGATGCGA 667
Query 701 GGAATGCTGCACTTGATCTGTGGGATGAACCAAAACGTAGATACTATTGGTGA 753
|||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 668 GGAATGCTGCGCTTGATCTTTGGGATGAACCAAAACGTAGATACTATTGGTGA 720
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27753483576
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5