BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G43540.1

Length=414
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg948806 jgi|Araly1|948806|scaffold_800693.1                        682    0.0  


> Ahg948806 jgi|Araly1|948806|scaffold_800693.1
Length=454

 Score =  682 bits (369),  Expect = 0.0
 Identities = 401/416 (96%), Gaps = 4/416 (1%)
 Strand=Plus/Plus

Query  1    ATGGAG-TGTGAGAGATCATCGTCGTCCACGTCATCAGAAACCGGAGCAGTCAGGCACCG  59
            |||||| | |||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct  21   ATGGAGAT-TGAGAGATCATCTTCGTCCACGTCATCAGAAACCGGAGCCGTCAGGCACCG  79

Query  60   TCGTA-CGTCGTCGTCGTCAGTCTCCACCGTGACGAGACGAATGTACGAGTGCACTTTCT  118
            ||||| || |||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct  80   TCGTACCG-CGTCGTCGTCGGTCTCCACCGTGACTAGACGAATGTACGAGTGCACTTTCT  138

Query  119  GCAAAAGAGGTTTCACAAACGCACAAGCTTTAGGTGGTCATATGAACATCCATCGACGTG  178
            ||||||||||||| || ||||||||||||||||||||||| |||||||||||||||||||
Sbjct  139  GCAAAAGAGGTTTTACGAACGCACAAGCTTTAGGTGGTCACATGAACATCCATCGACGTG  198

Query  179  ACCGTCTCAACAAGGCCAAGGTGCAAAACGATGCTGACGTGGCACTCTCGCAAACTCATA  238
            ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct  199  ACCGTCTCAACAAGGCCAAGGTGCAAAACGATGCTGACGTGGCACTCTCACAAACTCATA  258

Query  239  GATGTTTCCACGTGGCGTCTGACCTTGGAGGCTACGAGCAAGTAGACTCCGTCGTGTTGA  298
            |||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct  259  GATGTTTCCACGTGGCGTCTGATCGTGGAGGCTACGAGCAAGTAGACTCCGTCGTGTTGA  318

Query  299  GGACGACGACCTCGAACTACATCCAACACTTACGAATCGGCTCGATGGCTACAAGGAGAG  358
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  319  GGACGACGACCTCGAACTACATCCAACACTTACGAATCGGCTCGATGGCTACAAGGAGAG  378

Query  359  AAAACGTCGTCGTTGAAGGAAATGAAATCGATTTGGAGCTGCGTCTTGGCTTATGA  414
            |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct  379  AAAACGTCGTCGTTGAAGGAGATGAAATCGATTTGGAGCTGCGTCTTGGCTTATGA  434



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14880679710


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5