BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G43550.1

Length=372
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg915884 jgi|Araly1|915884|Al_scaffold_0008_635                     412    7e-115


> Ahg915884 jgi|Araly1|915884|Al_scaffold_0008_635
Length=780

 Score =  412 bits (223),  Expect = 7e-115
 Identities = 310/352 (88%), Gaps = 6/352 (2%)
 Strand=Plus/Plus

Query  22   GACGGCCATAGACAATACGTTATAGAACAAGAGCATCTGGTTTTATCACTAACATCACA-  80
            |||| ||||||| |||| || | | |||| |||||||| |||||||||||||||||||| 
Sbjct  172  GACGTCCATAGAAAATATGTCAAACAACAGGAGCATCTAGTTTTATCACTAACATCACAG  231

Query  81   CTCATCGTCGTGGAGAAAGATCGAGATCTCGGGAGATGCTTACTCCTACTTAGAAGGTGG  140
             | | ||  ||||||||||||||||||| |||||||| ||||| |||| |||||||| ||
Sbjct  232  TTTA-CGGGGTGGAGAAAGATCGAGATCACGGGAGATCCTTACGCCTATTTAGAAGGCGG  290

Query  141  GATTTGCATCAATAGTGCTATATACTATGGTGTTGGACATACAAAGATAGCTAGATTTAA  200
            |||||||||| || |||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct  291  GATTTGCATCGATGGTGCTATATACTATGGAGTTGGACATACAAAGATAGCTAGATTTGA  350

Query  201  TATTAGATCCGAGAAGATAATGTTTATTCAAGCA-CCAGAGGATTATAATGCAATCTCAT  259
            | |||||| ||||||||| | ||||||||||| | ||| | || ||||| ||||||||||
Sbjct  351  TCTTAGATACGAGAAGATGACGTTTATTCAAGGACCCA-AAGACTATAACGCAATCTCAT  409

Query  260  GTTATTCAACCCTTACAAATTACAAAGGAAAATTAGCATGTGTAAGCTATGACTCCTATT  319
            |||||||||| |||||||||||  ||||||||||||||||||||||||||||||||||||
Sbjct  410  GTTATTCAACACTTACAAATTATGAAGGAAAATTAGCATGTGTAAGCTATGACTCCTATT  469

Query  320  GTGAATCTAAGT-TGCGTGTATGGATTCTACACGATGTTGAGAAAGAAGAAT  370
            |||||||||| | ||||| ||||||||||||| |||| ||||||| ||||||
Sbjct  470  GTGAATCTAA-TATGCGTCTATGGATTCTACAAGATGCTGAGAAACAAGAAT  520



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13278144972


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5