BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G43560.1
Length=3789
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494645 jgi|Araly1|494645|fgenesh2_kg.8__461__AT5G43560.2 4905 0.0
Ahg470409 jgi|Araly1|470409|fgenesh2_kg.1__363__AT1G04300.3 1363 0.0
Ahg358775 jgi|Araly1|358775|fgenesh1_pg.C_scaffold_8002562 1094 0.0
> Ahg494645 jgi|Araly1|494645|fgenesh2_kg.8__461__AT5G43560.2
Length=3428
Score = 4905 bits (2656), Expect = 0.0
Identities = 3098/3309 (94%), Gaps = 39/3309 (1%)
Strand=Plus/Plus
Query 495 CAGGGGAATGTCAGAGAGTACTAATGAAGATAGTGGAGCAGGAAGATCATCACTGGAAGA 554
|||||||||||| |||||||||||||||||| |||||||||||||||||||| |||| ||
Sbjct 141 CAGGGGAATGTCTGAGAGTACTAATGAAGATTGTGGAGCAGGAAGATCATCAGTGGATGA 200
Query 555 GAATTCAAATGGACAAAGAAGTCAATCAGAAGAAGCAATCGCTGAGTGGCGTTCTTCTGA 614
||||||||||||||||||||||||||||||||||| | | || || ||||| || |||||
Sbjct 201 GAATTCAAATGGACAAAGAAGTCAATCAGAAGAAGTACTAGCGGAATGGCGGTCGTCTGA 260
Query 615 ACAAGTTGAGAATGGAACTCCTTCTACATCTCCACCGTATTGGGACATCGATGATGAT-- 672
||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 261 TCAAGTGGAGAATGGAACTCCTTCAACATCGCCACCGTATTGGGACATCGATGATGATGA 320
Query 673 -GACGATTTTGGATCAAAACCATCTCAACTATTTGGGAAAAATACTTGGACGATTGAGAA 731
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 321 CGACGATTTTGGATCAAAACCATCTGAACTATTTGGGAAAAATACTTGGACGATTGAGAA 380
Query 732 ATTTTCAGATATCAACAAACGAGAGCTCCGCGGCGATGTTTTTGAAGTCGGGGGTTACAA 791
||||||||| || |||||||| |||||||| ||||||||||||||||| ||||| |||||
Sbjct 381 ATTTTCAGAAATTAACAAACGGGAGCTCCGTGGCGATGTTTTTGAAGTTGGGGGCTACAA 440
Query 792 ATGGTATATATTAATTTATCCACAAGGGTGTGATGTTTGCAACCATCTCTCTTTGTTTCT 851
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 441 ATGGTATATATTAATTTATCCACAAGGGTGTGATGTTTGCAACCATCTCTCTTTGTTTCT 500
Query 852 ATGTGTTGCACACCATGAAAAGCTTCTTCCAGGCTGGAGTCATTTTGCTCAGTTTACTAT 911
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 501 CTGTGTTGCACACCATGAAAAACTTCTTCCAGGCTGGAGTCATTTTGCTCAGTTTACTAT 560
Query 912 AGCTGTGTCGAATAAAGATCCGAAGAAGTCAAAGCATTCAGATACGTTACACCGGTTTTG 971
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 561 AGCTGTGTCGAATAAAGATCCAAAGAAATCAAAGCATTCAGATACGTTACACCGGTTTTG 620
Query 972 GAAGAAAGAGCATGATTGGGGTTGGAAGAAA-TTTATTGAGTTACCTAAATTGAAGGAAG 1030
||| ||||| ||||||||||| ||||| ||| |||||||||| ||||||||| |||||||
Sbjct 621 GAAAAAAGAACATGATTGGGGATGGAA-AAAGTTTATTGAGTCACCTAAATTAAAGGAAG 679
Query 1031 GGTTTATAGATGATTCTGGTTGTCTTACAATTAAAGCTCAAGTGCAGGTGATCAGAGAGA 1090
|||| |||||||||| || ||||||||||||||| |||||||| ||||||||||||||||
Sbjct 680 GGTTCATAGATGATTATGATTGTCTTACAATTAAGGCTCAAGTCCAGGTGATCAGAGAGA 739
Query 1091 GAGTGGACCGACCTTTTCGCTGCCTTCATTATAAATATAGGGAGGAACTTGTTAGGGTGT 1150
| |||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct 740 GGGTGGACCGACCTTTTCGCTGCCTTCATTATAAGTATAGGGAGGAACTTGTTCGGGTGT 799
Query 1151 ATTTGGGAAATGTAGAGCAAATTTGCTGGCGGTTTGTGGAAGAGAAAAGAAGCAAGCTTG 1210
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 800 ATTTGACAAATGTAGAGCAAATTTGCTGGCGGTTTGTGGAAGAGAAAAGAAGCAAGCTTG 859
Query 1211 GTAGGTTGATAGAGGACAAGGCAAAATGGAAAAGCTTCTGTGCTTTCTGGATGGGGTTGG 1270
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 860 GTAGGTTGATAGAGGACAAGGCAAAATGGAAAAGCTTCTGTGCTTTCTGGATGGGGTTGG 919
Query 1271 ACCAAAATTCAAGGCGTCGAATGTCCCGAGAGAAAATGGATGTGATTCTAAAAATAGTTG 1330
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 920 ACCAAAATTCAAGGCGTCGAATGTCCCGAGAGAAAATGGATGTGATTCTAAAAATAGTTG 979
Query 1331 TAAAACACTTCTTTGTCGAGAAGGAAGTTACATCTACTTTGGTGATGGATTCCTTGTATA 1390
||||||| ||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 980 TAAAACAATTCTTCATTGAGAAGGAAGTTACATCTACTTTGGTGATGGATTCCTTGTATA 1039
Query 1391 GTGGATTGAAGGCTCTTGAAGGCCAAAATAAGAACAAGGAGAGTAGGCCGAGACTAATGG 1450
|||| |||||||||||||||||||||| |||||||||| | | |||||||||||||||||
Sbjct 1040 GTGGGTTGAAGGCTCTTGAAGGCCAAATTAAGAACAAGAAAACTAGGCCGAGACTAATGG 1099
Query 1451 ATACTGAAGAATC-CACAGCTCCAATTGTTAGCGTGGACAAAGATTCGTTTGCATTAGTT 1509
|||||||||||| | |||||||||||||||| |||||||||||| ||||||||||||||
Sbjct 1100 ATACTGAAGAATTGC-CAGCTCCAATTGTTAGTGTGGACAAAGATACGTTTGCATTAGTT 1158
Query 1510 GATGATGTGTTATTACTCTTAGAGAAGGCTGCTCTGGAGCCATTGCCTAAAAAAGAGGAA 1569
||||||||||||||||||||||||| ||||||| ||||||||||||||| ||||||||||
Sbjct 1159 GATGATGTGTTATTACTCTTAGAGAGGGCTGCTGTGGAGCCATTGCCTACAAAAGAGGAA 1218
Query 1570 AAGAGTTCTCAAAACCGTACGAAGGATGGGAATGCTGGAGAGGAATTCAGTAGAGAAGCC 1629
|| ||| | |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1219 AAAAGTCCCCAAAACCGCACGAAGGATGGGAATGCTGGAGAGGAATTCAGTAGAGAAGCC 1278
Query 1630 GTTGAGCGTGATGATAGGCGTTTAACTGAATTGGGTAGACGGACTGTGGAGATATTTGTT 1689
||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1279 ATTGAGCGTGATGAGAGGCGTTTAACTGAGTTGGGTAGACGGACTGTGGAGATATTTGTT 1338
Query 1690 CTTGCACATATCTTCAGCAACAAAATTGAAGTTGCATACCAAGAAGCTATTGCATGGAAA 1749
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1339 CTTGCACATATCTTCAGCAACAAAATTGAAGTTGCATACCAAGAAGCTATTGCATGGAAA 1398
Query 1750 AGGCAAGAAGAACTTATTCGTGAAGAAGAGGAAGCGTGGCTGGCAGAAAGCGAACAGAAG 1809
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1399 CGGCAAGAAGAACTTATTCGTGAAGAGGAGGAAGCGTGGCTGGCAGAAAGCGAACAGAAG 1458
Query 1810 GGCaaaagaggagcatctgaaaaagagaagaaatctaagaagaaacaggcgaaacagaaa 1869
| |||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1459 GCCAAAAGAGGACCATCCGAAAAAGAGAAGAAATCTAAGAAGAAACAGGCGAAACAGAAA 1518
Query 1870 aagaacaaaaacaaaggaaaggaaatgaggaaagaagacaaggtgagaacccaaacagaa 1929
||||||||||||||||||||||||| | ||||||||| ||||||| |||||||||||||
Sbjct 1519 AAGAACAAAAACAAAGGAAAGGAAAAAAAGAAAGAAGAGAAGGTGAAAACCCAAACAGAA 1578
Query 1930 gaaagggaaaTTGAGAAAGAGGAATGTGTGAGAGCGATAGCAGAATCGTCAGCTGAAAAA 1989
|||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1579 GAAAGGGATATTGAGAAAGAGGAATGTGTGAGAGCGAAAGCAGAATCGTCAGCTGAAAAA 1638
Query 1990 CCTGACACACTTGGAGATGTCTCTGACGTGTCTGATTCAGTAGATAGTTCAGCTGAAATA 2049
||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 1639 CCTGACACACTTGGAGATGTCTCTGACCTTTCTGATTCAGTAGATAGTTCAGCTGAAATA 1698
Query 2050 CTTCAGCTTGATTCAGAAGATAGAGAGAGTAGTCCTGTTCATTGGGAAATGGATGCCTCA 2109
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1699 CTTCAGCTTGATTCAGAAGATAGAGAGAGTAGTCCTGTTCATTGGGAAATAGATGCCTCA 1758
Query 2110 GAGGTTCATCCTCCTTCTGCAGGAGACACTAGCAGAGGAAGAGGCAATTCTTTTTCTATA 2169
||| || |||||| |||| ||||||||||||||||||||||||||||||| || | ||||
Sbjct 1759 GAGATTAATCCTCTTTCTTCAGGAGACACTAGCAGAGGAAGAGGCAATTCCTTATGTATA 1818
Query 2170 CCTAATGGAGTTGCAG-A-AA-GAAAGGGTCTGTCCACAATGGATGATAGTTCTTCAACC 2226
|||||||||||||||| | || |||| |||||||||||||||||||||||||||||||||
Sbjct 1819 CCTAATGGAGTTGCAGCAGAAAGAAAAGGTCTGTCCACAATGGATGATAGTTCTTCAACC 1878
Query 2227 TGTTCTAATGACTCGATTCA-ATCAGGGGTAGCCAATGGGTCATACAAAGGGAATGTATT 2285
||||||||||||| ||| | ||||||||||||||||||||||||||||||||||||| |
Sbjct 1879 TGTTCTAATGACTTGATA-AGATCAGGGGTAGCCAATGGGTCATACAAAGGGAATGTAGT 1937
Query 2286 AAATTGCCAAAGCCAAAAGTGGTTTAGCAATGGAAAAATACAACCAGGAAAAGTATCTGA 2345
||||||||||||||| |||||| || ||||||||||| |||||||||||||||||||||
Sbjct 1938 AAATTGCCAAAGCCAGAAGTGGCATATCAATGGAAAAACACAACCAGGAAAAGTATCTGA 1997
Query 2346 TTCCAACAGTTTAGCCAGTGAAAAAGAGCATCAACCTTCAAGACTTGCATCTGACCCTAA 2405
| ||| |||||||||||||||||||||| ||||||||||||||| ||| |||||||||||
Sbjct 1998 TGCCAGCAGTTTAGCCAGTGAAAAAGAGGATCAACCTTCAAGACCTGCGTCTGACCCTAA 2057
Query 2406 AAATCAGAGCCATTCTTCTGATATACGCAGAGTTGGTGAAGCTGACATAGTTATCTCCCA 2465
||||||||||||||||||||| | ||||||||||||||||||||| |||||||||||
Sbjct 2058 AAATCAGAGCCATTCTTCTGAGAAACGCAGAGTTGGTGAAGCTGATGCGGTTATCTCCCA 2117
Query 2466 CATTCAAAAACCAGAGAGCCCTAAGGAACGTAGTCCTGTTAGCAAGGATCCCAACATGAT 2525
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2118 CATTCAAAAACCAGAGAGCCCGGGGGAACGTAGTCCTGTTAGCAAGGATCCCAACATGAT 2177
Query 2526 TCAGATGAAAGAGAAAAGTGCTGCGGTACTTTCCCCATCCAGAGCTGCTCCTTGGAATCC 2585
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 2178 TCAGATGAAAGAGAAAACTGCTGCGGTACTTTCCCCATCCAGAGCTGCTCCTTGGAATCC 2237
Query 2586 TCCGTCTCCAGTGCAAGCAAAACCGGAGAAAAAGGGTGTTTCAAATGTAGAGGCGGTTCC 2645
||| |||| ||||||||||||||||||||||| || ||||||||||||||| || |||||
Sbjct 2238 TCCATCTCTAGTGCAAGCAAAACCGGAGAAAACGGTTGTTTCAAATGTAGATGCTGTTCC 2297
Query 2646 AAACAGGAAAGTCAT-ATCTGTTAAATCACCTTCATCACATCATGCATCACCATCTCGTG 2704
|||||||||||| | ||||| || ||||||||||||| |||| ||||||||||||||||
Sbjct 2298 AAACAGGAAAGT-AGCATCTGCTAGATCACCTTCATCAGATCAAGCATCACCATCTCGTG 2356
Query 2705 A-AGCTCAGTTGCAAACAGTGGGTCCTAGAGCTGATATACAGAAAATCGCTTCTCCGAAA 2763
| | || |||||||||| ||||||| |||||||||||||||||||| || |||||| |||
Sbjct 2357 AGA-CTAAGTTGCAAACTGTGGGTCTTAGAGCTGATATACAGAAAACCGTTTCTCCAAAA 2415
Query 2764 CCTGTGGAACAACCAGCACCTCCTATGTCAAGGCCTTTGAGTGCTCCTATAATCCCTCCA 2823
|| |||| ||||||||||||| |||| ||||||||||||||||||||||||||||| |||
Sbjct 2416 CCGGTGGCACAACCAGCACCTTCTATCTCAAGGCCTTTGAGTGCTCCTATAATCCCCCCA 2475
Query 2824 ACGCAAGCTGCACCTGTAATATCTGCTGTTCAAAC--C-TCGACTGCGTCCCTTGCTCGT 2880
| ||||||||||||||||||||||||||||||||| | ||| |||||||||||||||||
Sbjct 2476 AAGCAAGCTGCACCTGTAATATCTGCTGTTCAAACAACCTCGGCTGCGTCCCTTGCTCGT 2535
Query 2881 TCAATGAGCTCAACAGGGCGTTTAGGTTCACCGACACATAGCCAAGCTTACAATCCTCAA 2940
||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||
Sbjct 2536 TCAATGAGCTCAACAGGCCGTTTAGGTTCACCGATACATAGCCAAGCTTACAATCCTCAA 2595
Query 2941 TCCTACAAACATGCCATAGTGGGTTCATCTGGTTTCACCCACCCAAGCTCTCAATCGA-G 2999
||||| ||||||||||||||||| |||||||||||||||||| ||||| ||||||| | |
Sbjct 2596 TCCTATAAACATGCCATAGTGGGATCATCTGGTTTCACCCACTCAAGCACTCAATCAACG 2655
Query 3000 TGGAACAAGCACATTGCCGCCTTATTCACATCCGTCTCCTATCTCAGTATCAAATCAGTC 3059
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2656 -GGAACAAGCACATTGCCGCCTTATTCACATCCGTCTCCTATCTCAGTATCAAGTCAGTC 2714
Query 3060 TGGTTTCCCTATCAATGTTGGCTCTTGGGATGTTTCTTCTGGTGGGCTATTGTGGACCGG 3119
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 2715 TGGTTTCCCTATCAATGTTGGCTCTTGGGATGTTTCTTCTGGTGGGCTCTTGTGGACCGG 2774
Query 3120 TGGTTCGAGTTCAACCAGAGATACAACAACAACCATCAGCGGGAATCACAAAACAAACAC 3179
|||||||||||||| ||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 2775 TGGTTCGAGTTCAAACAGAGATACAACAACAACCATCAGCGGGAATCATAAAACGAACAC 2834
Query 3180 TTACAACGCACCCGTAGTAACTACCAGCATCAGGCCTACTAATGTTCAGATAGGGAGAAC 3239
||||||| | ||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 2835 TTACAACACCCCCGTAGTAACTACCAGCATCAGGCCTACTAATGTCCAGATTGGGAGAAC 2894
Query 3240 GGCACAGAGTCTGATGACCGATGAGTTCCCTCACCTTGATATCATCAATGATCTGCTTGC 3299
||| |||| | || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 2895 GGCGCAGA-T--GA---CCGATGAGTTCCCTCACCTTGATATCATCAATGATCTGCTTGA 2948
Query 3300 AGACGAACACGGTACAATGGATAATAGCGTATACCGTGTACCACAACAGTTCAACAACCA 3359
||||||||||||| ||||||| | ||| ||||||| ||||||||||||||||||||||||
Sbjct 2949 AGACGAACACGGTTCAATGGACAGTAGTGTATACCATGTACCACAACAGTTCAACAACCA 3008
Query 3360 GTACTCATATCATGGCGGTGCGGATCTCGGGATCTCTAGCAGGTCTAGGAGTTACAGTGA 3419
||||||||| ||||| ||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct 3009 GTACTCATACCATGGTGGTGCTGATCTCGGGATCTCTGGCAGGTCTAGGAGTTACAGTGA 3068
Query 3420 TGATGGATTTCACCAGTCTTACGGTGAATACATGCCACATTCTGCTTCTTCCTCGCCATA 3479
|||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct 3069 TGATGGATTTCACCAGTCTTACGGTGAATACATGCCACATTCTGGTTCTTCTTCGCCATA 3128
Query 3480 TGGTAATGGGCAAACACAATCGCAATGGCAGATGGCAAATATGGATTTCTCTTTACCGGC 3539
||||||||| |||||||||||||||||||||||||||| | ||| || ||||||| |||
Sbjct 3129 TGGTAATGGACAAACACAATCGCAATGGCAGATGGCAA-T--GGACTTGTCTTTACGGGC 3185
Query 3540 TATGAGGAACCAAGACGATGTATCAGCATCAGCAACAGCTACTTACTCTTACTTTGATTT 3599
|||||||||||||||||||| |||||||||||| |||||||||||||||||||||
Sbjct 3186 TATGAGGAACCAAGACGATGCATCAGCATCAGC------TACTTACTCTTACTTTGATTT 3239
Query 3600 AGATTCATCAAACCCGAATTTGTCTGGAATCAACGGCTATAGGGACTTCAGGCCATCGAA 3659
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 3240 AGATTCATCAAACCCGAACTTGTCTGGAATCAACGGCTATAGAGACTTCAGGCCATCGAA 3299
Query 3660 CGGACACTGAG--G-TTTGGGTTTAAAGAGTGGCATTGCATTGTAATGTTTATTATATAA 3716
|||||||||| | ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 3300 CGGACACTGAATAGCTTTGGGTTTAAGGAGTGGCATTGCATTGTAATGTTTATTATATAA 3359
Query 3717 AGATGGAAAGCAAAAAACATTTGTGTAAAGAGAGTTTTCGTCCTCTTCGTTTCAAATGAA 3776
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3360 AGATGGAAAGCAAAAAACATTTGTGTAAAGAGAGTTTTCGTCCTCTTCGTTTCAAATGAA 3419
Query 3777 TCCTTTTTT 3785
|| ||||||
Sbjct 3420 TCTTTTTTT 3428
> Ahg470409 jgi|Araly1|470409|fgenesh2_kg.1__363__AT1G04300.3
Length=3532
Score = 1363 bits (738), Expect = 0.0
Identities = 1593/1989 (80%), Gaps = 126/1989 (6%)
Strand=Plus/Plus
Query 543 ATCACTGGAAGAGAATTCAAATGGACAAAGA-AGTCAATCAGAAGAAGCAATCGCTGAGT 601
|||| | || |||| ||| ||||||| || | |||||| ||| ||||||| || ||||||
Sbjct 209 ATCAGTAGAGGAGAGTTCTAATGGAC-AACACAGTCAAGCAGGAGAAGCACTCTCTGAGT 267
Query 602 GGCGTTCTTCTGAACAAGTTGAGAATGGAACTCCTTCTACATC-TCCACCGTATTGGGAC 660
|||| ||||||| ||||| ||||| || ||||| ||||| || || || || |||||
Sbjct 268 GGCGGTCTTCTGGTCAAGTAGAGAACGGGACTCCATCTACGTCGCCCTCC-TACTGGGAT 326
Query 661 ATCGATGATGATGACGATTTTGGATC-AAAACCATCTCAACTATTTGGGAAAA-ATACTT 718
|||||||| ||||| |||| ||| | ||||| ||| | ||||| |||||| ||||||
Sbjct 327 ATCGATGAGGATGATGATTATGG-CCTTAAACCCTCTGAGTTATTT-GGAAAATATACTT 384
Query 719 GGACGATT-GAGAAATTTTCAGATATCAACAAACGAGAGC-TCCGCGGCGATGTTTTTGA 776
||| |||| | ||||||||||| ||||| ||| | |||| | || ||||| ||||||
Sbjct 385 GGAAGATTCCA-AAATTTTCAGAAATCAATAAAAGGGAGCAT-CGTAGCGATAATTTTGA 442
Query 777 AGTC-GGGGGTTACAAATGGTATATATTAATTTATCCACAAGGGTGTGATGTTTGCAACC 835
|| | || || |||||||||||||| ||||||||||||||||| |||||||||| || |
Sbjct 443 AG-CTGGCGGCTACAAATGGTATATTTTAATTTATCCACAAGGATGTGATGTTTTTAATC 501
Query 836 ATCTCTCTTTGTTTCTATGTGTTGCACACCATG--AAA--------A-G--C--TT-CT- 878
||||||| |||||||| ||||||||| || ||| ||| | | | || ||
Sbjct 502 ATCTCTCCTTGTTTCTCTGTGTTGCAAACTATGATAAACTTCTTCCAGGTTCTTTTGCTA 561
Query 879 TC-------CAGGCTGGAGTCATTTTGCTCAGTTTACTATAGCTGTGTCGAATAAAGATC 931
|| |||||||||||||||| ||||||||||||||| |||||| ||||||||||
Sbjct 562 TCTTGGAGGCAGGCTGGAGTCATTTCGCTCAGTTTACTATATCTGTGTTGAATAAAGATA 621
Query 932 CGAAGAAGTCAAAGCATTCAGATACGTTACACCGGTTTTGGAAGAAAGAGCATGATTGGG 991
||||| | ||| ||||||||| | |||||||||||||||||||||||||||||||
Sbjct 622 TAAAGAAAACGAAGTTTTCAGATACACTGCACCGGTTTTGGAAGAAAGAGCATGATTGGG 681
Query 992 GTTGGAAGAAA-TTTATTGAGTTACCTAAATTGAAGGAAGGGTTTATAGATGATTCTGGT 1050
| ||||| ||| ||||| ||||||||||| || ||||| ||||| ||||||||||||||
Sbjct 682 GATGGAA-AAAGTTTATGGAGTTACCTAAGTTAAAGGACGGGTTCATAGATGATTCTGGC 740
Query 1051 TGTCTTACAATTAAAGCTCAAGTGCAGGTGATCAGAGAGAGAGTGGACCGACCTTTTCGC 1110
|||||||||||| | |||||||| ||||||||||||||||| |||||| |||||||||||
Sbjct 741 TGTCTTACAATTGAGGCTCAAGTTCAGGTGATCAGAGAGAGGGTGGACAGACCTTTTCGC 800
Query 1111 TGCCTTCATTATAAATATAGGGAG-GAACTTGTTAGGGTGTATTTGGGAAATGTAGAGCA 1169
|||||| ||| || |||| |||| ||||||||||||||||||||| |||||| || ||
Sbjct 801 TGCCTTGATTGTAGTTATA-GGAGAGAACTTGTTAGGGTGTATTTGCCAAATGTGGATCA 859
Query 1170 AATTTGCTGGCGGTTTGTGGAAGAGAAAAGAAGCAAGCTTGGTAGGTTGATAGAGGACAA 1229
|| |||| |||| ||||| ||||||| |||||||||||| || |||||||||||||||||
Sbjct 860 AAATTGCCGGCGTTTTGTTGAAGAGAGAAGAAGCAAGCTCGGGAGGTTGATAGAGGACAA 919
Query 1230 GGCAAAATGGAAAAGCTTCTGTGCTTTCTGGATGGGGTTGGACCAAAATTCAAGGCGTCG 1289
||||| ||||| |||||| ||| ||||||| | ||| |||||||||| || ||||||||
Sbjct 920 GGCAAGATGGACTAGCTTCGGTGTTTTCTGGTTAGGGATGGACCAAAACTCTAGGCGTCG 979
Query 1290 AATGTCCCGAGAGAAAATGGATGTGATTCTAAAAATAGTTGTAAAACACTTCTTT-GTCG 1348
||||| ||||||||||||| || || |||||| ||||||||||||||| ||| || |
Sbjct 980 GATGTCTAGAGAGAAAATGGACGTAATCCTAAAAGGAGTTGTAAAACACTT-TTTCGTAG 1038
Query 1349 AGAAGGAAGTTACATCTACTTTGGTGATGGATTCCTTGTATAGTGGATTGAAGGCTCTTG 1408
| || ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1039 AAAAAGAAGTTACATCCACTTTGGTGATGGATTCCTTGTATAGTGGGTTGAAGGCTCTTG 1098
Query 1409 AAGGCCAAAATAAGAACAAGGAGAG-TAGGCCGAGACTAATGGATACTGAA-GAA-TCCA 1465
||||||||| ||||||| | || || |||||| ||||| | ||| | || ||| | |
Sbjct 1099 AAGGCCAAACTAAGAAC-ACGAAAGATAGGCCAAGACTGTTAGATGC-CAAGGAATTGC- 1155
Query 1466 CAGCTCCAATTGTTAGCGTGGACAAAGAT-TCGTTTGCATTAGTTGATGATGTGTTATTA 1524
||||||||||||| |||||||| |||||| | ||| | |||||||||||||||| | |||
Sbjct 1156 CAGCTCCAATTGTAAGCGTGGAAAAAGATAT-GTTCGTATTAGTTGATGATGTGCTGTTA 1214
Query 1525 CTCTTAGAGAAG-GCTGCTCTGGAGCCATTGCCTAAAAAAGAGGA-AAAGAGTTCTCAAA 1582
||| ||||| || |||||||| |||||||||||| ||||||||| |||| || | || |
Sbjct 1215 CTCCTAGAG-AGAGCTGCTCTTGAGCCATTGCCTCCAAAAGAGGAGAAAG-GTCCCCAGA 1272
Query 1583 ACCGTACGAAGGATGGGAATGCTGGAGAGGAATTC-AGTAGAGAAGCCGT-TGAGCGTGA 1640
||||||| |||||||| |||| |||||| || || | || |||||| | ||||||||
Sbjct 1273 ACCGTACAAAGGATGGCAATGATGGAGAAGAGGTCAACAAG-GAAGCC-TACGAGCGTGA 1330
Query 1641 TGATAGGCGTTTAACTGAATTGGGTAGACGGACTGTGGAGATATTTGTTCTTGCACATAT 1700
||| || ||||||||||| ||||||||||| |||||||| |||||||||||||| |||||
Sbjct 1331 TGAGAGACGTTTAACTGAGTTGGGTAGACGAACTGTGGAAATATTTGTTCTTGCCCATAT 1390
Query 1701 CTTCAGCAACAAAATTGAAGTTGCATACCAAGAAGCTATTGC-ATGGAAAAGGCAAGAAG 1759
|||||||| ||||| || |||||||| ||||||||||| || | |||||||| ||||
Sbjct 1391 CTTCAGCAGTAAAATCGAGGTTGCATATCAAGAAGCTATCGCGCT-AAAAAGGCAGGAAG 1449
Query 1760 AACTTATTCGTGAAGAAGAGGAAGCGTGGCTGGCAGAAAGCGAACAGAAGGG-Caaaaga 1818
||||||||||||| ||||||||||||||| ||||||||| ||||||| |||| ||||| |
Sbjct 1450 AACTTATTCGTGAGGAAGAGGAAGCGTGGTTGGCAGAAACCGAACAG-AGGGCCAAAAAA 1508
Query 1819 ggagcatctgaaaaagagaagaaatctaagaagaaacaggcgaaacagaaaaagaacaaa 1878
|||||| | || | ||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1509 GGAGCAGCCGAGAGAGAGAAGAAATCTAAGAAGAAACAGGCGAAACAGAAACGGAACAAA 1568
Query 1879 aacaaaggaaagga-aatgaggaaag-aagacaaggtgagaa---c--c-ca--aacag- 1927
|| ||||| ||||| || || |||| |||| |||||||| | | || || ||
Sbjct 1569 AATAAAGGGAAGGACAAA-AG-AAAGGAAGAAAAGGTGAGCTTTGCATCACATGAAAAGG 1626
Query 1928 a-----ag-aaagggaaaTTGA-GA--AAGA---GGAATGTGTGA-GAGCGATAGCAGAA 1974
| || ||| ||| || || |||| ||| | ||| | | | || |||| |
Sbjct 1627 ATCTCGAGGAAAACCAAAACGATGAGGAAGAAAAGGATTCTGTCACG-GAGAAAGCACAC 1685
Query 1975 TCGTCAGCTGAAAAACCTGACACACTTGGAGATGTCTCTGACGTGTCTGATTCAGTAGAT 2034
|| ||||||||||| ||||| || ||||||||||| || ||| | |||||||| || |||
Sbjct 1686 TCTTCAGCTGAAAAGCCTGATACTCTTGGAGATGTGTCCGACATATCTGATTCTGTGGAT 1745
Query 2035 AGTTCAGCTGAAATACTTCAGCTTGATTCAGAAGATAGAGAGAGTAGTCCTGTTCATTGG 2094
|||| ||||| || |||||| ||||| ||||||||| || |||||| |||||||||||
Sbjct 1746 GGTTCGGCTGACATTGTTCAGCCTGATTTAGAAGATAGGGATAGTAGTTCTGTTCATTGG 1805
Query 2095 GAAA-TGGATGCCTCAGAGGTTCATCCTCCTTC-TGCAGGAGACA-CTAGCAGAGGAAGA 2151
|| | || | |||| || ||||| || | || | |||||| | | || |||||||||
Sbjct 1806 GATACTG-ACGCCTTGGAAATTCATGCTGCATCAT-CAGGAGGGAGC-AGTAGAGGAAGA 1862
Query 2152 GGCAATTCTTTTTCTATACCTAATGGAGTTGCAGAAAGAAAGGGTCTGTCCACAATGGAT 2211
|||| | | || |||||| |||||||||||||| ||| |||||| ||||||
Sbjct 1863 GGCA---CA----C----CC-AATGGAATTGCAGAAAGAAAGAGTCAGTCCACTATGGAT 1910
Query 2212 GATAGTTCTTCAACCTGTTCTAATGACTCGATTCAATCAGGGGTAGCCAATGGGTCATAC 2271
|||||||||||||| ||||||||||| || || | || |||||| |||||||||| |||
Sbjct 1911 GATAGTTCTTCAACTTGTTCTAATGATTCTATCCGGTCGGGGGTAACCAATGGGTCCTAC 1970
Query 2272 AAAGGGAATGTATTAAATTGCC-AAAGCCAAAAGTGGTTTAGCA-ATGGAAA-AATACAA 2328
||||||||| || |||| || ||| || |||| | | || | ||||| ||| |||
Sbjct 1971 CAAGGGAATGCCTTGAATTTCCGAAA-CCGGAAGTCGCCGAACAGA-GGAAAGAAT-CAA 2027
Query 2329 CCAGGAAAAG---TATCTGATTCCAACAGTTTAGCCAGTGAAAAAGA-GCATCAACCTTC 2384
| || ||||| |||||||| || ||||||||| ||||||| ||| | ||||||||||
Sbjct 2028 CAAGTAAAAGCAATATCTGATGCCCACAGTTTAGGGAGTGAAACAGATG-ATCAACCTTC 2086
Query 2385 AAGACTTGC-ATCTGACCCTAAAAA-TCAGAGCCATTCTTCTGATATACGCAGA-GTTGG 2441
|| ||||| | | ||||| ||| | ||||| ||||||| || | ||| | |||||
Sbjct 2087 AACACTTGGGA-CAGACCC-AAAGAGTCAGAATTATTCTTCCGAGGCAAGCA-ACGTTGG 2143
Query 2442 TGAAGCTGA 2450
|||| ||||
Sbjct 2144 TGAATCTGA 2152
> Ahg358775 jgi|Araly1|358775|fgenesh1_pg.C_scaffold_8002562
Length=951
Score = 1094 bits (592), Expect = 0.0
Identities = 708/761 (93%), Gaps = 20/761 (3%)
Strand=Plus/Plus
Query 2916 ACATAGCCAAGCTTACAATCCTCAATCCTACAAACATGCCATAGTGGGTTCATCTGGTTT 2975
|||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||
Sbjct 204 ACATAGCCAAGCTTACAATCCTCAATCCTATAAACATGCCATAGTGGGTTTATCTGGTTT 263
Query 2976 CACCCACCCAAGCTCTCAATCGA-GTGGAACAAGCACATTGCCGCCTTATTCACATCCGT 3034
||||||| ||||| ||||||| | | ||||||||||||||||||||||||||||||||||
Sbjct 264 CACCCACTCAAGCACTCAATCAACG-GGAACAAGCACATTGCCGCCTTATTCACATCCGT 322
Query 3035 CTCCTATCTCAGTATCAAATCAGTCTGGTTTCCCTATCAATGTTGGCTCTTGGGATGTTT 3094
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 323 CTCCTATCTCAGTATCAAGTCAGTCTGGTTTCCCTATCAATGTTGGCTCTTGGGATGTTT 382
Query 3095 CTTCTGGTGGGCTATTGTGGACCGGTGGTTCGAGTTCAACCAGAGATACAACAACAACCA 3154
||||||||||||| ||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct 383 CTTCTGGTGGGCTCTTGTGGACCGGTGGTTCGAGTTCAAACAGAGAT---ACAACAACCA 439
Query 3155 TCAGCGGGAATCACAAAACAAACACTTACAACGCACCCGTAGTAACTACCAGCATCAGGC 3214
||||||||||||| ||||| |||||||||||| | |||||||||||||||||||||||||
Sbjct 440 TCAGCGGGAATCATAAAACGAACACTTACAACACCCCCGTAGTAACTACCAGCATCAGGC 499
Query 3215 CTACTAATGTTCAGATAGGGAGAACGGCACAGAGTCTGATGACCGATGAGTTCCCTCACC 3274
|||||||||| ||||| |||||||||| | | | |||||||||||||||||||||||
Sbjct 500 CTACTAATGTCCAGATTGGGAGAACGG--C---G-CAGATGACCGATGAGTTCCCTCACC 553
Query 3275 TTGATATCATCAATGATCTGCTTGCAGACGAACACGGTACAATGGATAATAGCGTATACC 3334
|||||||||||||||||||||||| ||||||||||||| ||||||| | ||| |||||||
Sbjct 554 TTGATATCATCAATGATCTGCTTGAAGACGAACACGGTTCAATGGACAGTAGTGTATACC 613
Query 3335 GTGTACCACAACAGTTCAACAACCAGTACTCATATCATGGCGGTGCGGATCTCGGGATCT 3394
||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||
Sbjct 614 ATGTACCACAACAGTTCAACAACCAGTACTCATACCATGGTGGTGCTGATCTCGGGATCT 673
Query 3395 CTAGCAGGTCTAGGAGTTACAGTGATGATGGATTTCACCAGTCTTACGGTGAATACATGC 3454
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 674 CTGGCAGGTCTAGGAGTTACAGTGATGATGGATTTCACCAGTCTTACGGTGAATACATGC 733
Query 3455 CACATTCTGCTTCTTCCTCGCCATATGGTAATGGGCAAACACAATCGCAATGGCAGATGG 3514
|||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 734 CACATTCTGCTTCTTCTTCGCCATATGGTAATGGACAAACACAATCGCAATGGCAGATGG 793
Query 3515 CAAATATGGATTTCTCTTTACCGGCTATGAGGAACCAAGACGATGTATCAGCATCAGCA- 3573
||| | ||| || ||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 794 CAA-T--GGACTTGTCTTTACGGGCTATGAGGAACCAAGACGATGCATCAGCATCAGCAT 850
Query 3574 -A-CA---GCTACTTACTCTTACTTTGATTTAGATTCATCAAACCCGAATTTGTCTGGAA 3628
| || ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 851 CAGCATCAGCTACTTACTCTTACTTTGATTTAGATTCATCAAACCCGAACTTGTCTGGAA 910
Query 3629 TCAACGGCTATAGGGACTTCAGGCCATCGAACGGACACTGA 3669
||||||||||||| |||||||||||||||||||||||||||
Sbjct 911 TCAACGGCTATAGAGACTTCAGGCCATCGAACGGACACTGA 951
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 143172589626
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5