BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G43570.1

Length=509
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg948802 jgi|Araly1|948802|scaffold_800689.1                        350    7e-96


> Ahg948802 jgi|Araly1|948802|scaffold_800689.1
Length=271

 Score =  350 bits (189),  Expect = 7e-96
 Identities = 248/275 (90%), Gaps = 10/275 (4%)
 Strand=Plus/Plus

Query  34   aaaa-aaagagaggaagagaaaTGTCGGACGTTTGCCAAAATACTGCAGGAGAAGGGATG  92
            |||| ||| ||| |||||||||||||||| || |||| | ||||||||||||||||||||
Sbjct  1    AAAATAAAAAGA-GAAGAGAAATGTCGGAAGTATGCCCAGATACTGCAGGAGAAGGGATG  59

Query  93   AAGAGC-TCATGGCCTGAATTGGTGGGGAGAAGAGGAGAAGAAGTCAAA-GAGATCATCG  150
            |||| | ||||||||||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct  60   AAGA-CTTCATGGCCTGAATTGGTGGGGAGAAGAGGAGAAGAAG-CAAAAGAGATCATCG  117

Query  151  ATAGAGAGAACACGAAAGTGACGGCCAAGATTATATCTGAAAATGCAGTTGTTTTGGCTG  210
            |||||||||||||||||||||||||  ||||||||||||||||||||||||||||| |||
Sbjct  118  ATAGAGAGAACACGAAAGTGACGGCTGAGATTATATCTGAAAATGCAGTTGTTTTGACTG  177

Query  211  TTGTAATTTGTGATAGGGTTTATGTTCGTGTCAATGACCAA-GGCATTGTCACAAGAACC  269
            ||||  |||||||||||||||||||||||||||||||| || |||||||||||| |||||
Sbjct  178  TTGTGGTTTGTGATAGGGTTTATGTTCGTGTCAATGAC-AATGGCATTGTCACACGAACC  236

Query  270  CCTATTTCGTTGGCTAATTTAATTGTtatatatat  304
            ||| |  |||||| ||| | |||| ||||| ||||
Sbjct  237  CCTGT--CGTTGGTTAACTGAATTATTATAGATAT  269



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18505460665


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5