BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G43580.1

Length=515
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg331046 jgi|Araly1|331046|fgenesh1_pm.C_scaffold_8000389           377    3e-104


> Ahg331046 jgi|Araly1|331046|fgenesh1_pm.C_scaffold_8000389
Length=219

 Score =  377 bits (204),  Expect = 3e-104
 Identities = 214/219 (98%), Gaps = 0/219 (0%)
 Strand=Plus/Plus

Query  82   ATGGCAAGCATATGCGAAGATCCAGGAAAAAGCTCATGGCCAGAGCTTTTGGGGGCAAAA  141
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGGCAAGCATATGCGAAGATCCAGGAAAAAGCTCATGGCCAGAGCTTTTGGGGGCAAAA  60

Query  142  GGAGAAGATGCAAAAGAAGTGATCGAGAGAGAGAATCCAAAAATGAAAGCAGTTATCATT  201
            |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct  61   GGAGAAGATGCAAAAGAAGTGATCGAAAGAGAGAATCCCAAAATGAAAGCAGTTATCATT  120

Query  202  TTGGATGGAACAGTTGTTCCGGAGATCTTTATTTGCTCTCGTGTTTACGTTTGGGTCAAC  261
            ||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  121  TTGGATGGAACAGCTGTTCCTGAGATCTTTATTTGCTCTCGTGTTTACGTTTGGGTCAAC  180

Query  262  GATTGCGGAATCGTTGTTCAAATTCCTATCATCGGTTAA  300
            |||||||||||||||||||||||||| ||||||||||||
Sbjct  181  GATTGCGGAATCGTTGTTCAAATTCCCATCATCGGTTAA  219



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18734394199


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5