BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G43590.1
Length=1206
Score E
Sequences producing significant alignments: (Bits) Value
Ahg331045 jgi|Araly1|331045|fgenesh1_pm.C_scaffold_8000388 1796 0.0
> Ahg331045 jgi|Araly1|331045|fgenesh1_pm.C_scaffold_8000388
Length=1218
Score = 1796 bits (972), Expect = 0.0
Identities = 1125/1201 (94%), Gaps = 2/1201 (0%)
Strand=Plus/Plus
Query 2 TGTTCAAGAACAATAAACCGCCGAAATACGGAAACCTTGTAACCATCCTCAGCCTCGACG 61
|||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 17 TGTTCAAGAAAAATAAACCGCCGAAATACGGAGACCTTGTAACCATCCTCAGCCTCGACG 76
Query 62 GCGGCGGAGTCCGAGGAATCATTGGGGGAGTCATCCTTGCTAATCTTGAAAAACATCTTC 121
||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 77 GCGGCGGAGTCCGTGGAATCATCGGGGGAGTCATCCTTGCTAATCTTGAAAAACATCTTC 136
Query 122 AGGAAATTGATAATGACGAAAGCGTGAGGCTAGCCGATTATTTTGACGTGATAGCCGGAA 181
||||||||||||| ||||||| ||||||||||||||||||||| || ||||||||||| |
Sbjct 137 AGGAAATTGATAAAGACGAAACCGTGAGGCTAGCCGATTATTTCGATGTGATAGCCGGGA 196
Query 182 CCAGCACCGGTGGCCTCATGACGGCCATGTTGACTGCGCCGAACGATTCCGGCCGGCCAC 241
||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct 197 CCAGCACCGGTGGCCTCATGACGGCCATGTTGACTGCACCGAACCATTCCGGCCGGCCAC 256
Query 242 TTTATGCTGCCAAAGACATTGTCCCGTTTTACTTAGAAGAATCTCCTAAAATATTTTATG 301
| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 257 TCTATGCTGCCAAAGACATTGTCCCGTTTTACTTAGAAGAATCTCCTAAGATATTTTATG 316
Query 302 GATCGAAATGGTGGGATCCGTCTGCTTTATGG-GCACTGTTTCGTCCAAAGTACAACGGA 360
|||| ||||||||| | |||||| ||||||| | |||||||||||||| ||| |||||
Sbjct 317 GATCTAAATGGTGGAAACCGTCTATTTTATGGCGT-CTGTTTCGTCCAAAATACGACGGA 375
Query 361 GAGTATCTGCATACAAGATTGGGAGAGATTCTTGGAGAGACAAAACTTGACCAGACACTC 420
|||||||| |||||| ||||||||||||||||||||||||||| |||||| || ||||||
Sbjct 376 GAGTATCTACATACACGATTGGGAGAGATTCTTGGAGAGACAAGACTTGATCAAACACTC 435
Query 421 ACAAATGTTGTCATACCTACCTTCGACATCAAGAAACTTCAACCCACCATCTTCTCCTCA 480
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 436 ACAAACGTTGTCATACCTACCTTCGACATCAAGAAACTTCAACCAACCATCTTCTCCTCA 495
Query 481 TACCATGCATCAGTTGACCCTAGTTTGAACGCCAAGTTATCAGACATATGCATTGGCACA 540
|||||||| || ||||||||||| |||||| ||||||||||||||||||||||||||||
Sbjct 496 TACCATGCGTCGGTTGACCCTAGCATGAACGTCAAGTTATCAGACATATGCATTGGCACA 555
Query 541 TCAGCTGCTCCATTTTACTTACCTCCTTATAAATTTCCCGAAAACGATAAGATGAGAACG 600
||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 556 TCAGCTGCTCCATATTACTTACCTCCTTATAAATTTCCCAAAAACGATAAGATGAGAACG 615
Query 601 TTTAACCTCATAGACGGTGGTGTTACCGCTAATGACCCGACTCTGGTAGGCATGACAGCT 660
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 616 TTTAACCTCATAGACGGTGGTGTTACCGCTAATGACCCGACTCTGGTGGGCATGACAGCT 675
Query 661 ATGTCTAGAAAGTCTATAATCAAACATCCTGATATGGATGGGTTCAAGCCGTTAGAATAC 720
|||||||||||||||||||| || |||||||||||||||||||||||||||||||| ||
Sbjct 676 ATGTCTAGAAAGTCTATAATTAACCATCCTGATATGGATGGGTTCAAGCCGTTAGAGTAT 735
Query 721 GAAAAGTATATCGTGATATCTATAGGGACAGGATCGGCGAAAAGGGAGGAGTACTACAGT 780
|| | |||| |||||||||| |||||||| |||||||| ||||| ||||||||||||||
Sbjct 736 GATAGGTATCTCGTGATATCGATAGGGACTGGATCGGCAAAAAGAGAGGAGTACTACAGC 795
Query 781 GCAGTAGAGGCTGCAAAATGGGGATTCGAAAATTGGGCGTACAACTGGAAGCATAAAACA 840
||| |||||||||| ||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct 796 GCAATAGAGGCTGCGAAATGGGGATTTGAAAATTGGGCGTTCAACTGGAAGCATAAAACG 855
Query 841 ACTCCGATATTAGACATTATCTTTGAATCAAGCCGAGACATGGTTCAGTACCACACCTCG 900
||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||
Sbjct 856 ACTCCGATATTAGACATTATCTTGGAATCAAGCCGGGACATGGTCCAGTACCACACCTCG 915
Query 901 GTTCTGTTTCAAGCCCTAGAGTCCGAGGATAACTATCTAAGAATCGACGCAGATACATTG 960
|||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct 916 GTTCTGTTTCAAGCCCTAAAGTCCGAGGATAACTACCTAAGAATCGACGCAGATACATTG 975
Query 961 AAAAAAGATGAAGTCTTTATGGATGACTCCGAGACGTTGAACTTAGAGAATTTAAAGAAT 1020
||||| ||||||||||||||||||||| | |||||||||||||||||||| ||||||||
Sbjct 976 AAAAAGGATGAAGTCTTTATGGATGACGCAAAGACGTTGAACTTAGAGAATCTAAAGAAT 1035
Query 1021 ATTGGAGAGAAATTACTGGACACAAATGTCATGCGTATGAACCTCGACACTTATACATAT 1080
||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 1036 ATTGGAGAGAAATTACTAGACACAAATGTTGTGCGTATGAACCTCGACACTTATACATAT 1095
Query 1081 GAACCTATTCCTAAAACCGTCAACAATGATCAAGAACTCAAAAGGTTTGCGAAAATTCTC 1140
||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1096 GAACCTATTGATAAAACCGTCAACAATGATCAAGAACTCAAAAGGTTTGCCAAAATTCTC 1155
Query 1141 TCGGATGAAAAGAAATTAAGGAACAAGACATTTAAGACCATGATTGATGATTCGTCAAAC 1200
||||||||||||||||||||||| ||| ||| |||||||||| ||||||||||||||||
Sbjct 1156 TCGGATGAAAAGAAATTAAGGAATGAGAGATTCAAGACCATGACTGATGATTCGTCAAAC 1215
Query 1201 T 1201
|
Sbjct 1216 T 1216
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45023164977
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5