BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G43610.1
Length=1479
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487420 jgi|Araly1|487420|fgenesh2_kg.6__554__AT1G66570.1 2122 0.0
Ahg908151 jgi|Araly1|908151|Al_scaffold_0002_1232 2084 0.0
Ahg319456 jgi|Araly1|319456|fgenesh1_pm.C_scaffold_3002472 780 0.0
> Ahg487420 jgi|Araly1|487420|fgenesh2_kg.6__554__AT1G66570.1
Length=1557
Score = 2122 bits (1149), Expect = 0.0
Identities = 1373/1483 (93%), Gaps = 8/1483 (1%)
Strand=Plus/Plus
Query 1 ATGAGTGACCTCCAAGCAAACAAAGATGCAGCGGCTGTGAATAGACAGTCTTCCTCGTCG 60
|||||||||||||||||||| |||||||| |||||| || ||||||||||||| || |||
Sbjct 79 ATGAGTGACCTCCAAGCAAAAAAAGATGCGGCGGCTTTGGATAGACAGTCTTCTTCCTCG 138
Query 61 TCGGCGGATCTTAATGGGCCATCTCCGATGAGAAAGATGATATCGGTGGCTTCTATTGCC 120
|| |||| |||| |||||||||| ||| |||||||||||||||||||||||||||| ||
Sbjct 139 TCTGCGGTTCTTGATGGGCCATCACCGCTGAGAAAGATGATATCGGTGGCTTCTATCGCT 198
Query 121 GCCGGTATTCAGTTCGGTTGGGCTCTTCAGCTGTCTCTGCTAACTCCATACGTGCAGCTT 180
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 199 GCCGGTATTCAGTTTGGTTGGGCTCTTCAGCTTTCTCTGCTAACTCCATACGTGCAGCTT 258
Query 181 CTTGGAGTCCCACACAAATGGTCATCTTTCATATGGCTCTGTGGTCCTGTCTCCGGCCTG 240
|| ||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 259 CTCGGAGTCCCACATAAATGGTCATCTTTCATATGGCTCTGTGGTCCTATCTCCGGCCTG 318
Query 241 CTTGTCCAGCCATCCGTCGGTTACTTCAGCGACCGATGCAAGTCAAGATTCGGTCGTCGT 300
||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||
Sbjct 319 CTTGTCCAGCCATCCGTTGGTTACTTCAGCGACAGATGCAAGTCAAGATTCGGTCGTCGT 378
Query 301 CGTCCTTTCATCGCTATGGGCGCCTTACTTGTCGCCGTTGCTGTCGTACTAATCGGATAC 360
|||||||||||||| | ||||||||| ||||||||| ||||||| |||||||||||| |
Sbjct 379 CGTCCTTTCATCGCCACGGGCGCCTTGCTTGTCGCCCTTGCTGTTATACTAATCGGATTC 438
Query 361 GCGGCTGATTTCGGTCACAGCATGGGAGACAAAGTCGACGAACCTGTCAAGATGCGAGCC 420
|||||||||||||| |||| ||||||||||||| |||||||| |||||||||||||||||
Sbjct 439 GCGGCTGATTTCGGCCACACCATGGGAGACAAACTCGACGAAGCTGTCAAGATGCGAGCC 498
Query 421 G-TAGTTATCTTCGCTCTCGGTTTCTGGATCCTTGACGTGGCTAACAACACTCTCCAAGG 479
| | ||| |||||| | ||||||||||||||||||||||||||||||||||||| |||||
Sbjct 499 GTTGGTT-TCTTCGTTATCGGTTTCTGGATCCTTGACGTGGCTAACAACACTCTTCAAGG 557
Query 480 ACCTTGCCGCGCATTCCTTGGTGATTTAGCAGCTGGAGACGCTAAGAAAACACGAACAGC 539
|||||| ||||| || ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 558 ACCTTGTCGCGCTTTTCTTGGTGATTTAGCAGCTGGAGACGCTAAGAAAACGCGAACAGC 617
Query 540 AAACGC-ATTTTTCTCCTTCTTCATGGCTGTTGGAAATGTTTTGGGATATGCGGCCGGAT 598
|||||| | ||||||| ||||||||||| |||||||| ||||| ||||| || || ||||
Sbjct 618 AAACGCGA-TTTTCTCTTTCTTCATGGCCGTTGGAAACGTTTTAGGATACGCTGCAGGAT 676
Query 599 CGTACACTAACCTCTACAAGATCTTCCCTTTCACAATGACTAAAGCATGCGACATCTATT 658
|||||||||||||| ||||||| |||||||||||| ||||||||||||||||||||||||
Sbjct 677 CGTACACTAACCTCCACAAGATTTTCCCTTTCACAGTGACTAAAGCATGCGACATCTATT 736
Query 659 GCGCAAATCTCAAGAGCTGTTTCTTCCTTTCCATCACTCTCCTCCTAGTCGTCACCATCA 718
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 737 GCGCAAATCTCAAGAGCTGTTTCATCATTTCCATCACTCTCCTCCTAGTCGTCACCATCA 796
Query 719 TAGCTCTTTGGTACGTGGAAGACAAGCAATGGTCGCCTAAGGCAGATTC-CGACAACGAG 777
||||||||||||||||||||||||||||||||||||| |||||||| || || || ||
Sbjct 797 TAGCTCTTTGGTACGTGGAAGACAAGCAATGGTCGCCAAAGGCAGACTCTGGA-AAAGAT 855
Query 778 AAAACTCCATTCTTTGGTGAAATCTTTGGAGCTTTCAAGGTGATGAAACGTCCAATGTGG 837
|||||||| ||||| || || |||||||||||||||||||||||||||||||||||||||
Sbjct 856 AAAACTCCTTTCTTCGGCGAGATCTTTGGAGCTTTCAAGGTGATGAAACGTCCAATGTGG 915
Query 838 ATGCTATTAATCGTCACGGCCTTGAACTGGATCGCATGGTTCCCTTTTCTTTTGTACGAT 897
|||||| |||||||||||||||||||||||||||| ||||||||||| ||||| ||||||
Sbjct 916 ATGCTACTAATCGTCACGGCCTTGAACTGGATCGCGTGGTTCCCTTTCCTTTTATACGAT 975
Query 898 ACTGATTGGATGGGTCGTGAGGTGTACGGTGGAGACTCAAAAGGAGATGACAAAATGAAG 957
|| |||||| |||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 976 ACAGATTGGGTGGGTCGTGAAGTGTACGGTGGAGACTCAAAAGGAGATGACAAAATGAAG 1035
Query 958 AAACTATACAACCAAGGAATTCACGTTGGTGGGTTGGGATTGATGCTTAACTCTATCGTT 1017
||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||
Sbjct 1036 AAACTATACAACCAAGGAATTCAAGTTGGTTCGTTGGGATTGATGCTTAACTCTATCGTT 1095
Query 1018 CTTGGATTCATGTCACTTGGTATTGAAGGTATTAGTAGGAAAATGGGAGGAGCTAAAAGG 1077
|||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1096 CTTGGATTCATGTCGCTCGGTATTGAAGGGATTAGTAGGAAAATGGGAGGAGCTAAAAGG 1155
Query 1078 CTTTGGGGAGCTGTGAATATCATCCTCGCCGTGTGTTTGGCAATGACGGTTTTGGTTACT 1137
|||||||||||||||||||| || ||||||||||||||||||||||| ||||||||||||
Sbjct 1156 CTTTGGGGAGCTGTGAATATAATTCTCGCCGTGTGTTTGGCAATGACAGTTTTGGTTACT 1215
Query 1138 AAAAAGGCAGAGGAGCACCGGA-GAATCGCCGGTCCGATGGCCCTTCCTACTGATGGCAT 1196
|||||||| ||||||||||||| || ||||||||||||||||||||||||| ||||||||
Sbjct 1216 AAAAAGGCCGAGGAGCACCGGAAGA-TCGCCGGTCCGATGGCCCTTCCTACGGATGGCAT 1274
Query 1197 CAGAGCTGGAGCATTGACTCTCTTTGCCCTTCTTGGAATTCCTCTTGCTATTACATTTAG 1256
|||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||
Sbjct 1275 CAGAGCTGGAGCATTGACCCTCTTTGCTCTTCTTGGAATTCCTCTGGCTATTACATTTAG 1334
Query 1257 TATTCCGTTCGCGCTAGCTTCCATAATCTCTAGCAGCTCCGGTGCCGGTCAAGGACTCTC 1316
||||||||| || ||||||||||| || || ||||||||||| ||||| |||||||||||
Sbjct 1335 TATTCCGTTTGCACTAGCTTCCATTATTTCAAGCAGCTCCGGCGCCGGCCAAGGACTCTC 1394
Query 1317 TCTAGGCGTTTTAAACATGACAATAGTGATACCACAAATGGTTGTATCATTTGGAGTTGG 1376
|||||| |||||||| ||| |||||||||||||||||||||||||||| |||| ||||||
Sbjct 1395 TCTAGGAGTTTTAAATATGGCAATAGTGATACCACAAATGGTTGTATCGTTTGCAGTTGG 1454
Query 1377 TCCTATTGATGCGTTATTTGGAGGTGGGAATTTACCAGGATTTGTGGTTGGAGCTATTGC 1436
|||||| ||||| |||||||||||||| || ||||||||||||||||| |||||||||||
Sbjct 1455 TCCTATCGATGCCTTATTTGGAGGTGGAAACTTACCAGGATTTGTGGTCGGAGCTATTGC 1514
Query 1437 AGCGGCAATCAGCAGTGTTGTGGCATTTTCCGTTTTACCATAA 1479
||||||||| |||||||||||||||||| |||| ||||| |||
Sbjct 1515 AGCGGCAATTAGCAGTGTTGTGGCATTTACCGTATTACCTTAA 1557
> Ahg908151 jgi|Araly1|908151|Al_scaffold_0002_1232
Length=1485
Score = 2084 bits (1128), Expect = 0.0
Identities = 1369/1487 (92%), Gaps = 10/1487 (1%)
Strand=Plus/Plus
Query 1 ATGAGTGACCTCCAAGCAAACAAAGATGCAGCGGCTGTGAATAGACAGTCTTCCTCGTCG 60
|||||||||||||||||||| ||||||| |||| || | ||||||||||||| || |||
Sbjct 1 ATGAGTGACCTCCAAGCAAAAAAAGATGTGGCGGTTGGGGATAGACAGTCTTCTTCCTCG 60
Query 61 TCGGCGGATCTTAATGGGCCATCTCCGATGAGAAAGATGATATCGGTGGCTTCTATTGCC 120
||| || |||| |||||||||| ||| | |||||||||||||||||||||||||| |||
Sbjct 61 TCGATGGTTCTTGATGGGCCATCGCCGCTAAGAAAGATGATATCGGTGGCTTCTATCGCC 120
Query 121 GCCGGTATTCAGTTCGGTTGGGCTCTTCAGCTGTCTCTGCTAACTCCATACGTGCAGCTT 180
|||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 121 GCCGGTATTCAGTTTGGTTGGGCTCTTCAGCTATCTCTGCTAACTCCATACGTTCAGCTT 180
Query 181 CTTGGAGTCCCACACAAATGGTCATCTTTCATAT-G----G-CTCTGTGGTCCTGTCTCC 234
|| ||||||||||| ||||||||||||||||||| | | |||||||||||| |||||
Sbjct 181 CTCGGAGTCCCACATAAATGGTCATCTTTCATATGGCTCTGTCTCTGTGGTCCTATCTCC 240
Query 235 GGCCTGCTTGTCCAGCCATCCGTCGGTTACTTCAGCGACCGATGCAAGTCAAGATTCGGT 294
||| ||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||
Sbjct 241 GGCTTGCTTGTCCAGCCATCCGTTGGTTACTTCAGCGACAGATGCAAGTCAAGATTCGGT 300
Query 295 CGTCGTCGTCCTTTCATCGCTATGGGCGCCTTACTTGTCGCCGTTGCTGTCGTACTAATC 354
|||||||||||||||||||| | | | ||||| ||||||||| ||||||| ||||||||
Sbjct 301 CGTCGTCGTCCTTTCATCGCCACGAGTGCCTTGCTTGTCGCCCTTGCTGTTATACTAATC 360
Query 355 GGATACGCGGCTGATTTCGGTCACAGCATGGGAGACAAAGTCGACGAACCTGTCAAGATG 414
|||| ||||||||||||||| |||| ||||||||||||| |||||||| |||||||||||
Sbjct 361 GGATTCGCGGCTGATTTCGGGCACACCATGGGAGACAAACTCGACGAAGCTGTCAAGATG 420
Query 415 CGAGCCG-TAGTTATCTTCGCTCTCGGTTTCTGGATCCTTGACGTGGCTAACAACACTCT 473
||||||| | ||| |||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 421 CGAGCCGTTGGTT-TCTTCGTTGTCGGTTTCTGGATCCTTGACGTGGCTAACAACACTCT 479
Query 474 CCAAGGACCTTGCCGCGCATTCCTTGGTGATTTAGCAGCTGGAGACGCTAAGAAAACACG 533
||||||||||| ||||| || ||||||||||||||||||||||||||||||||||| ||
Sbjct 480 TCAAGGACCTTGTCGCGCTTTTCTTGGTGATTTAGCAGCTGGAGACGCTAAGAAAACGCG 539
Query 534 AACAGCAAACGCATTTTTCTCCTTCTTCATGGCTGTTGGAAATGTTTTGGGATATGCGGC 593
||||||||||||| ||||||| || |||||||| |||||||| ||||||||||| || ||
Sbjct 540 AACAGCAAACGCAATTTTCTCTTTTTTCATGGCCGTTGGAAACGTTTTGGGATACGCTGC 599
Query 594 CGGATCGTACACTAACCTCTACAAGATCTTCCCTTTCACAATGACTAAAGCATGCGACAT 653
|||||||||||||||||| ||||||||||||||||||| |||||||||||| ||||||
Sbjct 600 AGGATCGTACACTAACCTCCACAAGATCTTCCCTTTCACGGTGACTAAAGCATACGACAT 659
Query 654 CTATTGCGCAAATCTCAAGAGCTGTTTCTTCCTTTCCATCACTCTCCTCCTAGTCGTCAC 713
|||||||||||||||||||||||||||| || |||||||||||||||| |||||||||||
Sbjct 660 CTATTGCGCAAATCTCAAGAGCTGTTTCATCATTTCCATCACTCTCCTTCTAGTCGTCAC 719
Query 714 CATCATAGCTCTTTGGTACGTGGAAGACAAGCAATGGTCGCCTAAGGCAGATTCCGACAA 773
|||||||||||||||||||||||||||||||||||||||||| |||||||| || || ||
Sbjct 720 CATCATAGCTCTTTGGTACGTGGAAGACAAGCAATGGTCGCCAAAGGCAGACTCTGAGAA 779
Query 774 CGAGAAAACTCCATTCTTTGGTGAAATCTTTGGAGCTTTCAAGGTGATGAAACGTCCAAT 833
|| |||||||| ||||| || || |||||||||||||||||||||||||||||||||||
Sbjct 780 TGATAAAACTCCGTTCTTCGGCGAGATCTTTGGAGCTTTCAAGGTGATGAAACGTCCAAT 839
Query 834 GTGGATGCTATTAATCGTCACGGCCTTGAACTGGATCGCATGGTTCCCTTTTCTTTTGTA 893
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 840 GTGGATGCTATTAATCGTCACGGCCTTGAACTGGATCGCGTGGTTCCCTTTTCTTTTATA 899
Query 894 CGATACTGATTGGATGGGTCGTGAGGTGTACGGTGGAGACTCAAAAGGAGATGACAAAAT 953
|||||| |||||| ||||| |||| |||||||||||||||||||||||||||||||||||
Sbjct 900 CGATACAGATTGGGTGGGTGGTGAAGTGTACGGTGGAGACTCAAAAGGAGATGACAAAAT 959
Query 954 GAAGAAACTATACAACCAAGGAATTCACGTTGGTGGGTTGGGATTGATGCTTAACTCTAT 1013
||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct 960 GAAGAAACTATACAACCAAGGAATTCAAGTTGGTTCGTTGGGATTGATGCTTAACTCTAT 1019
Query 1014 CGTTCTTGGATTCATGTCACTTGGTATTGAAGGTATTAGTAGGAAAATGGGAGGAGCTAA 1073
|||||||||||||||||| || ||||||||||| ||||||| ||||||||||||||||||
Sbjct 1020 CGTTCTTGGATTCATGTCGCTCGGTATTGAAGGGATTAGTAAGAAAATGGGAGGAGCTAA 1079
Query 1074 AAGGCTTTGGGGAGCTGTGAATATCATCCTCGCCGTGTGTTTGGCAATGACGGTTTTGGT 1133
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct 1080 AAGGCTTTGGGGAGCTGTGAATATCATCCTTGCCGTGTGTTTGGCAATGACGGTTTTGAT 1139
Query 1134 TACTAAAAAGGCAG-AGGAGCACCGGAGAATCGCCGGTCCGATGGCCCTTCCTACTGATG 1192
||||||||||| || |||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1140 TACTAAAAAGG-AGGAGGAGCACCGGAGAATCGCCGGTCCGATGGCCCTTCCTACCGATG 1198
Query 1193 GCATCAGAGCTGGAGCATTGACTCTCTTTGCCCTTCTTGGAATTCCTCTTGCTATTACAT 1252
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 1199 GCATCAGAGCTGGAGCATTAACTCTCTTTGCTCTTCTTGGAATTCCTCTTGCTATTACAT 1258
Query 1253 TTAGTATTCCGTTCGCGCTAGCTTCCATAATCTCTAGCAGCTCCGGTGCCGGTCAAGGAC 1312
| ||||||||||| || ||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 1259 TCAGTATTCCGTTTGCACTAGCTTCCATAATCTCAAGCAGCTCCGGCGCCGGTCAAGGAC 1318
Query 1313 TCTCTCTAGGCGTTTTAAACATGACAATAGTGATACCACAAATGGTTGTATCATTTGGAG 1372
| |||||||| |||||||||||| |||||||||| ||||||||| ||||||| |||||||
Sbjct 1319 TATCTCTAGGAGTTTTAAACATGGCAATAGTGATTCCACAAATGATTGTATCGTTTGGAG 1378
Query 1373 TTGGTCCTATTGATGCGTTATTTGGAGGTGGGAATTTACCAGGATTTGTGGTTGGAGCTA 1432
|||||||||||||||| |||||||||||||| || |||||||||||||| ||||||||||
Sbjct 1379 TTGGTCCTATTGATGCATTATTTGGAGGTGGAAACTTACCAGGATTTGTTGTTGGAGCTA 1438
Query 1433 TTGCAGCGGCAATCAGCAGTGTTGTGGCATTTTCCGTTTTACCATAA 1479
|||||||||||||||||||||||||||||||| | ||||| || |||
Sbjct 1439 TTGCAGCGGCAATCAGCAGTGTTGTGGCATTTACTGTTTTGCCTTAA 1485
> Ahg319456 jgi|Araly1|319456|fgenesh1_pm.C_scaffold_3002472
Length=1230
Score = 780 bits (422), Expect = 0.0
Identities = 476/503 (95%), Gaps = 0/503 (0%)
Strand=Plus/Plus
Query 424 GTTATCTTCGCTCTCGGTTTCTGGATCCTTGACGTGGCTAACAACACTCTCCAAGGACCT 483
|||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 307 GTTATCTTCGCTTTCGGTTTCTGGATCCTTGACGTGGCTAACAACACACTCCAAGGACCT 366
Query 484 TGCCGCGCATTCCTTGGTGATTTAGCAGCTGGAGACGCTAAGAAAACACGAACAGCAAAC 543
|||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 367 TGCCGCGCTTTCCTTGGTGATTTAGCCGCTGGAGACGCTAAGAAAACGCGAACAGCAAAC 426
Query 544 GCATTTTTCTCCTTCTTCATGGCTGTTGGAAATGTTTTGGGATATGCGGCCGGATCGTAC 603
|| |||||||| || |||||||| |||||||| ||||||||||| |||||||||||||||
Sbjct 427 GCGTTTTTCTCTTTTTTCATGGCCGTTGGAAACGTTTTGGGATACGCGGCCGGATCGTAC 486
Query 604 ACTAACCTCTACAAGATCTTCCCTTTCACAATGACTAAAGCATGCGACATCTATTGCGCA 663
||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 487 ACTAACCTCCACAAGATCTTCCCTTTCACAATGACTAAAGCATGCGACATTTATTGCGCA 546
Query 664 AATCTCAAGAGCTGTTTCTTCCTTTCCATCACTCTCCTCCTAGTCGTCACCATCATAGCT 723
||||||||||| ||||||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct 547 AATCTCAAGAGTTGTTTCTTCATTTCCATCACTCTTCTCCTAGTCGTCACCATCATAGCT 606
Query 724 CTTTGGTACGTGGAAGACAAGCAATGGTCGCCTAAGGCAGATTCCGACAACGAGAAAACT 783
||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 607 CTTCGGTACGTGGAAGACAAGCAATGGTCGCCTAAGGCAGACTCCGACAACGAGAAAACT 666
Query 784 CCATTCTTTGGTGAAATCTTTGGAGCTTTCAAGGTGATGAAACGTCCAATGTGGATGCTA 843
|| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 667 CCGTTCTTCGGTGAGATCTTTGGAGCTTTCAAGGTGATGAAACGTCCAATGTGGATGTTA 726
Query 844 TTAATCGTCACGGCCTTGAACTGGATCGCATGGTTCCCTTTTCTTTTGTACGATACTGAT 903
||||| |||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 727 CTAATCCTCACGGCCTTGAACTGGATCGCATGGTTCCCTTTTCTTTTATATGATACTGAT 786
Query 904 TGGATGGGTCGTGAGGTGTACGG 926
|||||||||||||| ||||||||
Sbjct 787 TGGATGGGTCGTGAAGTGTACGG 809
Score = 614 bits (332), Expect = 7e-175
Identities = 398/428 (93%), Gaps = 12/428 (3%)
Strand=Plus/Plus
Query 1048 ATTAGTAGGAAAATGGGAGGAGCTAAAAGGCTTTGGGGAGCTGTGAATATCATCCTCGCC 1107
||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 811 ATTAGTAGGAAGATGGGAGGAGCTAAAAGGCTTTGGGGAGCTGTGAATACCATCCTCGCG 870
Query 1108 GTGTGTTTGGCAATGACGGTTTTGGTTACTAAAAAGGCAGAGGAGCACCGGAGAATCGCC 1167
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 871 GTGTGTTTGGCAATGACGGTTTTGGTTACTAAAAAGGCGGAGGAGCACCGGAGAATCGCC 930
Query 1168 GGTCCGATGGCCCTTCCTACTGATGGCATCAGAGCTGGAGCATTGACTCTCTTTGCCCTT 1227
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 931 GGTCCGATGGCCCTTCCTACTGATGGCATCAGAGCTGGAGCATTGACTCTCTTTGCTCTT 990
Query 1228 CTTGGAATTCCTCTTGCTATTACATTTAGTATTCCGTTCGCGCTAGCTTCCATAATCTCT 1287
|||||||||||||||||||||||||| |||||||||||||| ||||||||||| |||||
Sbjct 991 CTTGGAATTCCTCTTGCTATTACATTCAGTATTCCGTTCGCACTAGCTTCCATTATCTCA 1050
Query 1288 AGCAGCTCCGGTGCCGGTCAAGGACTCTCTCTAGGCGTTTTAAACATGACAATAGTGATA 1347
||||||||||| ||||| |||||| | ||||||||||| |||||||||||
Sbjct 1051 AGCAGCTCCGGCGCCGGCCAAGGA---------G---TTTTAAACATGGCAATAGTGATA 1098
Query 1348 CCACAAATGGTTGTATCATTTGGAGTTGGTCCTATTGATGCGTTATTTGGAGGTGGGAAT 1407
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 1099 CCACAAATGGTTGTATCGTTTGGAGTTGGTCCTATTGATGCGTTATTTGGAGGTGGAAAC 1158
Query 1408 TTACCAGGATTTGTGGTTGGAGCTATTGCAGCGGCAATCAGCAGTGTTGTGGCATTTTCC 1467
||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| ||
Sbjct 1159 TTACCAGGATTTGTGGTCGGAGCTATTGCAGCAGCAATCAGCAGTGTTGTGGCATTTACC 1218
Query 1468 GTTTTACC 1475
||||||||
Sbjct 1219 GTTTTACC 1226
Score = 363 bits (196), Expect = 3e-99
Identities = 233/250 (93%), Gaps = 5/250 (2%)
Strand=Plus/Plus
Query 97 ATGATATCGGTGGCTTCTATTGCCGCCGGTATTCAGTTCGGTTGGGCTCTTCAGCTGTCT 156
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGATATCGGTGGCTTCTATTGCCGCCGGTATTCAGTTCGGTTGGGCTCTTCAGCTGTCT 60
Query 157 CTGCTAACTCCATACGTGCA-GCTTCTTGGAGTCCCACACAAATGGTCATCTTTCATATG 215
||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 61 TTGCTAACTCCATACGTGCAAG-TTCTTGGAGTCCCACACAAATGGTCATCTTTCATATG 119
Query 216 GCTCTGTGGTCCTGTCTCCGGCCTGCTTGTCCAGCCATCCG-TCGGTTACTTCAGCGACC 274
|||||||||||||||||| |||||||||||||||||||| | ||||| ||||| ||||
Sbjct 120 GCTCTGTGGTCCTGTCTCTAGCCTGCTTGTCCAGCCATCCACT-GGTTATTTCAGTGACC 178
Query 275 GATGCAAGTCAAGATTCGGTCGTCGTCGTCCTTTCATCGCTATGGGCGCCTTACTTGTCG 334
||||| ||||||||||||||| ||| |||||||||||||| || |||||||||||||| |
Sbjct 179 GATGCCAGTCAAGATTCGGTCATCGCCGTCCTTTCATCGCCATCGGCGCCTTACTTGTAG 238
Query 335 CCGTTGCTGT 344
| ||||||||
Sbjct 239 C-GTTGCTGT 247
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55345125985
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5