BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G43620.1
Length=1482
Score E
Sequences producing significant alignments: (Bits) Value
Ahg338779 jgi|Araly1|338779|fgenesh1_pg.C_scaffold_2000878 1253 0.0
Ahg925813 jgi|Araly1|925813|scaffold_201374.1 904 0.0
Ahg925815 jgi|Araly1|925815|scaffold_201376.1 243 4e-63
> Ahg338779 jgi|Araly1|338779|fgenesh1_pg.C_scaffold_2000878
Length=1401
Score = 1253 bits (678), Expect = 0.0
Identities = 1057/1226 (86%), Gaps = 82/1226 (7%)
Strand=Plus/Plus
Query 167 AACGCAAACGCTGGAACAACGATGAAGAGACGAA---ACGACAATCGCGGTTACGGTGGC 223
||||||||||||||||||||| |||||||||||| || |||||||||||||||| |
Sbjct 46 AACGCAAACGCTGGAACAACGTTGAAGAGACGAATCGACAACAATCGCGGTTACGGAATC 105
Query 224 GGAATCGGATGTTATCAAGAGGAGAGGAACCGTTACGCGCCGCCGCAAAAACGTTTCAGA 283
|| | ||| ||| |||||||| ||||||||||||| ||||||||||||||||||||||
Sbjct 106 GG-A---GAT-TTA-CAAGAGGAAAGGAACCGTTACGTGCCGCCGCAAAAACGTTTCAGA 159
Query 284 TCGC-AACTGCAA---C-AGC-AA-TTCCGATCTGGTCATAATCCTCTGTATCAT--T-A 333
|||| ||| |||| | | | || |||||||||||||||| ||||||||||||| | |
Sbjct 160 TCGCAAAC-GCAACCGCAAACGAATTTCCGATCTGGTCATATTCCTCTGTATCATCATCA 218
Query 334 TGGTAGTAATACTAATAATAACGTGTCTAGGGTTTCTTCTCAGTCATATAACAATTACGG 393
|||||| || | |||||||||| ||||||||||||||||||| |||||||||||||||||
Sbjct 219 TGGTAG-AA-A-TAATAATAACATGTCTAGGGTTTCTTCTCAATCATATAACAATTACGG 275
Query 394 TGTTGATGTGATTGCTTCTAATTCAAGTTTTGCTTTACCTAACAATGATTCTAACACCAA 453
||||||||||||||||||||||||||||||| | |||| ||||||||||||||||| |||
Sbjct 276 TGTTGATGTGATTGCTTCTAATTCAAGTTTTCCATTACGTAACAATGATTCTAACATCAA 335
Query 454 CAATTATCAGAAACCC--T-TTGTTGTTTATGGAAACCCTAATCCCCAAATTGTTCCTCT 510
|||||||||||||||| | |||||| |||||||||||||||||||||||||||||||||
Sbjct 336 CAATTATCAGAAACCCTTTATTGTTGGTTATGGAAACCCTAATCCCCAAATTGTTCCTCT 395
Query 511 TCCATTACCTTATCGTAAGCTTGATCCTTTA-GATTCGTTGCCTCAATGGGTTCCAAATT 569
||||||||||||||||||||||||| | | |||||||||||| |||||||||| ||||
Sbjct 396 TCCATTACCTTATCGTAAGCTTGAT-GATGATGATTCGTTGCCTGAATGGGTTCCGAATT 454
Query 570 CAACTCCGAATTATCCTGTTAGGTCATCGAATTTTGTACCAAACACACCTGATTTTACGA 629
||| | | | || || || ||||||||||||| || ||| | ||
Sbjct 455 CAA----G-A--A-CC--CTAACTC--CGAATTTTGTACC-AA-ACA-C-----TT---- 490
Query 630 ATGTTCAAAATCCGATGAATCATTCGAACATGGTTTCAGTTGTGTCTCAATCGATG---- 685
|||||||||||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct 491 ATGTTCAAAATCCGATGAATCATTCGAACATGGTTTCAGTTGTGTCACAAACGATGTCTC 550
Query 686 --CATCAACCAATTGTTTTAAGCAAAGAATTGACTGATTTGCTTAGTC-TTCTTAACAAT 742
||||||||||||||||| |||||||||||| ||||||| ||||| | |||||| |||
Sbjct 551 ATCATCAACCAATTGTTTTGAGCAAAGAATTGTCTGATTTACTTAG-CGTTCTTAGGAAT 609
Query 743 GAGAAAGAGAAGAAAACTTCAGAAGCAAGTAATAA-TGATTCATTGCCTGTTGGATTAAG 801
|||||||||||| ||||||||||||||||||| || |||||||||||| |||||||||||
Sbjct 610 GAGAAAGAGAAGGAAACTTCAGAAGCAAGTAA-AAGTGATTCATTGCCCGTTGGATTAAG 668
Query 802 CTTTGACAATCCATCATCGCTT-AATGTTCGACATGAATCTGTGATTAAGTCTCTGTATT 860
|||||| |||||||| ||| || ||||| |||||||||||||||||||||||||||||||
Sbjct 669 CTTTGATAATCCATCGTCG-TTGAATGTGCGACATGAATCTGTGATTAAGTCTCTGTATT 727
Query 861 CTGATATGCCGAGGCAATGTACTTCGTGTGGGGTGAGATTCAAATGTCAAGAAGAGCATA 920
| |||||||||||||||||| | ||||| ||||| || || ||||||||||| || ||||
Sbjct 728 CGGATATGCCGAGGCAATGTTCGTCGTGCGGGGTTAGGTTTAAATGTCAAGAGGAACATA 787
Query 921 GTAAACATATGGATTGGCACGTAAGGAAGAACAGG-TCGG-TGAAAACCACTACAAGACT 978
| || |||||||||||||| ||||||||||||||| | || | |||||||||| ||| |
Sbjct 788 GCAAGCATATGGATTGGCATGTAAGGAAGAACAGGAT-GGCT-AAAACCACTATGAGA-T 844
Query 979 TGGTC-AGCAACCGAAGAAATCGAGGGGATGGTTAGCGAGTGCATCTTTATGGCTTTGTG 1037
||| | |||||||| |||||||| |||||||||| | || |||||||| |||||| |||
Sbjct 845 TGGGCCAGCAACCGCAGAAATCGCGGGGATGGTTGGTAAGCGCATCTTTGTGGCTTAGTG 904
Query 1038 CACCAACGGGAGGAGGGACCGTAGAAG----TAG-C-ATCTTTTGGAGGAGGAGAAATGC 1091
|| |||| ||||||||||| ||||||| || | |||||| ||||||| | || ||
Sbjct 905 CAGCAACTGGAGGAGGGACTGTAGAAGCGGCTAAACCATCTTTCGGAGGAG-A-AAC-GC 961
Query 1092 AGAAGAAGAATGAAAAGGATCAAGTACAAAAACAACACATGGTGCCTGCGGATGAAGATC 1151
|||||||||| ||| |||| ||| |||| ||||| || |||||||| |||||| |||
Sbjct 962 AGAAGAAGAAGGAAGAGGAGAAAGAACAA---CAACAGATAGTGCCTGCAGATGAAAATC 1018
Query 1152 AGAAGAATTGCGCGTTATGCGTAGAGCCGTTTGAAGAGTTCTTTAGCCATGAAGCTGATG 1211
|||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1019 AGAAGAATTGCGCGTTGTGCGAAGAGCCGTTTGAAGAGTTCTTTAGCCATGAAGCTGATG 1078
Query 1212 ACTGGATGTACAAAGATGCAGTCTACTTAACCAAGAATGGTCGTATAGTTCATGTTAAGT 1271
| |||||||| |||||||||||||||||||||||||| |||||||||||||| | |||||
Sbjct 1079 ATTGGATGTATAAAGATGCAGTCTACTTAACCAAGAACGGTCGTATAGTTCACGCTAAGT 1138
Query 1272 GTATGCCTGAACCCCGACCTGCTAAGGATTTGAGAGAGCCGTCGAGGGTAATGTCTGTTA 1331
||||||||| |||||||||||| |||||| |||||||||||| ||||||||||||||||
Sbjct 1139 GTATGCCTGCACCCCGACCTGCAAAGGATACGAGAGAGCCGTCTAGGGTAATGTCTGTTA 1198
Query 1332 CAGTTCCATCGGTTGCGAAAGCTATA 1357
|||||||||||||||||||||| |||
Sbjct 1199 CAGTTCCATCGGTTGCGAAAGCAATA 1224
> Ahg925813 jgi|Araly1|925813|scaffold_201374.1
Length=938
Score = 904 bits (489), Expect = 0.0
Identities = 810/950 (85%), Gaps = 82/950 (9%)
Strand=Plus/Plus
Query 118 TTGTTGAATCGCGAAGATGGCATCAAACGGATCCTTCTCTGCTC--AG--A-G---A--- 166
|||||||||||||||||||||||||||||||| ||||||||||| || | | |
Sbjct 6 TTGTTGAATCGCGAAGATGGCATCAAACGGATTCTTCTCTGCTCAAAGAAACGCACACCG 65
Query 167 -AACGCAAACGCTGGAACAACGATGAAGAGACGAA---ACGACAATCGCGGTTACGGTGG 222
||||||||||||||||||||| |||||||||||| || ||||||||||||||||
Sbjct 66 TAACGCAAACGCTGGAACAACGTTGAAGAGACGAATCGACAACAATCGCGGTTACGGAAT 125
Query 223 CGGAATCGGATGTTATCAAGAGGAGAGGAACCGTTACGCGCCGCCGCAAAAACGTTTCAG 282
||| | ||| ||| |||||||| ||||||||||||| |||||||||||||||||||||
Sbjct 126 CGG-A---GAT-TTA-CAAGAGGAAAGGAACCGTTACGTGCCGCCGCAAAAACGTTTCAG 179
Query 283 ATCGC-AACTGCAA---C-AGC-AA-TTCCGATCTGGTCATAATCCTCTGTATCAT--T- 332
||||| ||| |||| | | | || |||||||||||||||| ||||||||||||| |
Sbjct 180 ATCGCAAAC-GCAACCGCAAACGAATTTCCGATCTGGTCATATTCCTCTGTATCATCATC 238
Query 333 ATGGTAGTAATACTAATAATAACGTGTCTAGGGTTTCTTCTCAGTCATATAACAATTACG 392
||||||| || | |||||||||| ||||||||||||||||||| ||||||||||||||||
Sbjct 239 ATGGTAG-AA-A-TAATAATAACATGTCTAGGGTTTCTTCTCAATCATATAACAATTACG 295
Query 393 GTGTTGATGTGATTGCTTCTAATTCAAGTTTTGCTTTACCTAACAATGATTCTAACACCA 452
|||||||||||||||||||||||||||||||| | |||| ||||||||||||||||| ||
Sbjct 296 GTGTTGATGTGATTGCTTCTAATTCAAGTTTTCCATTACGTAACAATGATTCTAACATCA 355
Query 453 ACAATTATCAGAAACCC--T-TTGTTGTTTATGGAAACCCTAATCCCCAAATTGTTCCTC 509
||||||||||||||||| | |||||| ||||||||||||||||||||||||||||||||
Sbjct 356 ACAATTATCAGAAACCCTTTATTGTTGGTTATGGAAACCCTAATCCCCAAATTGTTCCTC 415
Query 510 TTCCATTACCTTATCGTAAGCTTGATCCTTTA-GATTCGTTGCCTCAATGGGTTCCAAAT 568
|||||||||||||||||||||||||| | | |||||||||||| |||||||||| |||
Sbjct 416 TTCCATTACCTTATCGTAAGCTTGAT-GATGATGATTCGTTGCCTGAATGGGTTCCGAAT 474
Query 569 TCAACTCCGAATTATCCTGTTAGGTCATCGAATTTTGTACCAAACACACCTGATTTTACG 628
|||| | | | || || || ||||||||||||| || ||| | ||
Sbjct 475 TCAA----G-A--A-CC--CTAACTC--CGAATTTTGTACC-AA-ACA-C-----TT--- 511
Query 629 AATGTTCAAAATCCGATGAATCATTCGAACATGGTTTCAGTTGTGTCTCAATCGATG--- 685
|||||||||||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct 512 -ATGTTCAAAATCCGATGAATCATTCGAACATGGTTTCAGTTGTGTCACAAACGATGTCT 570
Query 686 ---CATCAACCAATTGTTTTAAGCAAAGAATTGACTGATTTGCTTAGTC-TTCTTAACAA 741
||||||||||||||||| |||||||||||| ||||||| ||||| | |||||| ||
Sbjct 571 CATCATCAACCAATTGTTTTGAGCAAAGAATTGTCTGATTTACTTAG-CGTTCTTAGGAA 629
Query 742 TGAGAAAGAGAAGAAAACTTCAGAAGCAAGTAATAA-TGATTCATTGCCTGTTGGATTAA 800
||||||||||||| ||||||||||||||||||| || |||||||||||| ||||||||||
Sbjct 630 TGAGAAAGAGAAGGAAACTTCAGAAGCAAGTAA-AAGTGATTCATTGCCCGTTGGATTAA 688
Query 801 GCTTTGACAATCCATCATCGCTT-AATGTTCGACATGAATCTGTGATTAAGTCTCTGTAT 859
||||||| |||||||| ||| || ||||| ||||||||||||||||||||||||||||||
Sbjct 689 GCTTTGATAATCCATCGTCG-TTGAATGTGCGACATGAATCTGTGATTAAGTCTCTGTAT 747
Query 860 TCTGATATGCCGAGGCAATGTACTTCGTGTGGGGTGAGATTCAAATGTCAAGAAGAGCAT 919
|| |||||||||||||||||| | ||||| ||||| || || ||||||||||| || |||
Sbjct 748 TCGGATATGCCGAGGCAATGTTCGTCGTGCGGGGTTAGGTTTAAATGTCAAGAGGAACAT 807
Query 920 AGTAAACATATGGATTGGCACGTAAGGAAGAACAGG-TCGG-TGAAAACCACTACAAGAC 977
|| || |||||||||||||| ||||||||||||||| | || | |||||||||| |||
Sbjct 808 AGCAAGCATATGGATTGGCATGTAAGGAAGAACAGGAT-GGCT-AAAACCACTATGAGA- 864
Query 978 TTGGTC-AGCAACCGAAGAAATCGAGGGGATGGTTAGCGAGTGCATCTTT 1026
|||| | |||||||| |||||||| |||||||||| | || ||||||||
Sbjct 865 TTGGGCCAGCAACCGCAGAAATCGCGGGGATGGTTGGTAAGCGCATCTTT 914
> Ahg925815 jgi|Araly1|925815|scaffold_201376.1
Length=190
Score = 243 bits (131), Expect = 4e-63
Identities = 163/179 (91%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 1197 GCCATGAAGCTGATGACTGGATGTACAAAGATGCAGTCTACTTAACCAAGAATGGTCGTA 1256
|||||||||||||||| ||||||||||||| ||||||||||||||||||||| |||||||
Sbjct 1 GCCATGAAGCTGATGATTGGATGTACAAAGGTGCAGTCTACTTAACCAAGAACGGTCGTA 60
Query 1257 TAGTTCATGTTAAGTGTATGCCTGAACCCCGACCTGCTAAGGATTTGAGAGAGCCGTCGA 1316
||||||| | |||||||||||||| ||||||||| || || ||| |||||||||||| |
Sbjct 61 TAGTTCACGCTAAGTGTATGCCTGCACCCCGACCAGCAAATGATACGAGAGAGCCGTCTA 120
Query 1317 GGGTAATGTCTGTTACAGTTCCATCGGTTGCGAAAGCTATACTCTGCTGATTGAGATTT 1375
||||||||||||||||||||||||||||||||| || ||| |||||||||||||||||
Sbjct 121 GGGTAATGTCTGTTACAGTTCCATCGGTTGCGAGTGCAATAGTCTGCTGATTGAGATTT 179
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55459396720
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5