BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G43640.1 Length=450 Score E Sequences producing significant alignments: (Bits) Value Ahg494640 jgi|Araly1|494640|fgenesh2_kg.8__456__AT5G43640.1 708 0.0 Ahg487766 jgi|Araly1|487766|fgenesh2_kg.6__900__AT5G09500.1 595 7e-170 Ahg940413 jgi|Araly1|940413|scaffold_600957.1 516 6e-146 Ahg470404 jgi|Araly1|470404|fgenesh2_kg.1__358__AT1G04270.1 455 1e-127 Ahg497418 jgi|Araly1|497418|fgenesh2_kg.390__2__AT5G43640.1 444 3e-124 Ahg892858 jgi|Araly1|892858|Al_scaffold_0006_854 436 5e-122 > Ahg494640 jgi|Araly1|494640|fgenesh2_kg.8__456__AT5G43640.1 Length=459 Score = 708 bits (383), Expect = 0.0 Identities = 427/449 (95%), Gaps = 0/449 (0%) Strand=Plus/Plus Query 2 TGGAACCAGAGGTTGTTGCGGCTGGAATTGTGAAAAAGAGAACCTTCAAAAAGTTTTCTT 61 ||||||||||||||| ||||||||||||| ||||||||||||| ||||| |||||||||| Sbjct 11 TGGAACCAGAGGTTGCTGCGGCTGGAATTATGAAAAAGAGAACGTTCAAGAAGTTTTCTT 70 Query 62 TCAGAGGAGTCGATCTCGATGCGCTTCTCGACATGTCCATCGAAGATCTTGTCAAACATT 121 ||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |||| Sbjct 71 TCAGAGGAGTCGATCTCGATGCGCTTCTCGACATGTCCACCGATGATCTTGTCAAGCATT 130 Query 122 TCAGTTCCCGTATTCGCAGAAGGTTTTCTAGAGGATTGACCAGAAAACCTATGGCTTTGA 181 ||||| | ||| ||||||||||||| ||||||||||||||||| |||||||||||||||| Sbjct 131 TCAGTGCTCGTGTTCGCAGAAGGTTCTCTAGAGGATTGACCAGGAAACCTATGGCTTTGA 190 Query 182 TTAAGAAATTGCGCAAAGCGAAAATGGAGGCACCAGCTGGTGAGAAGCCAGCATCAGTGA 241 | ||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| Sbjct 191 TCAAGAAATTGCGCAAAGCGAAAATAGAGGCACCAGCTGGTGAGAAGCCAGCAGCAGTGA 250 Query 242 GAACACACTTGAGGAACATGATCATTGTGCCTGAAATGATTGGAAGCATCATTGGTGTGT 301 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 251 GAACACACTTGAGGAACATGATCATTGTGCCTGAAATGATTGGAAGTATCATTGGTGTGT 310 Query 302 ACAACGGAAAGACTTTTAACCAAGTCGAGATCAAGCCGGAGATGATTGGACATTACTTGG 361 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 311 ACAACGGAAAGACTTTTAACCAAGTCGAGATCAAACCGGAGATGATTGGACATTACTTGG 370 Query 362 CTGAGTTCTCAATCTCATACAAACCGGTAAAGCACGGTAGGCCTGGTGTTGGTGCTACCA 421 |||| ||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||| Sbjct 371 CTGAATTCTCAATCTCCTACAAACCGGTTAAGCATGGTAGGCCTGGTGTTGGTGCTACCA 430 Query 422 ATTCCTCCAGGTTTATCCCTCTCAAGTGA 450 |||||||||||||||| |||||||||||| Sbjct 431 ATTCCTCCAGGTTTATTCCTCTCAAGTGA 459 > Ahg487766 jgi|Araly1|487766|fgenesh2_kg.6__900__AT5G09500.1 Length=623 Score = 595 bits (322), Expect = 7e-170 Identities = 408/450 (91%), Gaps = 4/450 (1%) Strand=Plus/Plus Query 3 GGAACCAGAGGTTGTTGCGGCTGGAATTGTGAAAAAGAGAACCTTCAAAAAGTTTTCTTT 62 ||| |||||||||| |||||||||||| |||||||||||||| ||||||||||||||||| Sbjct 47 GGATCCAGAGGTTGCTGCGGCTGGAATCGTGAAAAAGAGAACGTTCAAAAAGTTTTCTTT 106 Query 63 CAGAGGAGTCGATCTCGATGCGCTTCTCGACATGTCCATC-GAAGATCTTGTCAAACAT- 120 ||||||||| ||||| ||||| |||||||||||||| | | || ||||||||||| | | Sbjct 107 CAGAGGAGTTGATCTTGATGCTCTTCTCGACATGTCTA-CTGATGATCTTGTCAAGC-TC 164 Query 121 TTCAGTTCCCGTATTCGCAGAAGGTTTTCTAGAGGATTGACCAGAAAACCTATGGCTTTG 180 ||| ||||||||| || |||||||| |||||||||||||| || || |||||||||||| Sbjct 165 TTCCCTTCCCGTATCCGTAGAAGGTTCTCTAGAGGATTGACGAGGAAGCCTATGGCTTTG 224 Query 181 ATTAAGAAATTGCGCAAAGCGAAAATGGAGGCACCAGCTGGTGAGAAGCCAGCATCAGTG 240 || |||||| |||||||||||||||| || |||||||| || |||||||||||| ||||| Sbjct 225 ATCAAGAAACTGCGCAAAGCGAAAATTGAAGCACCAGCCGGAGAGAAGCCAGCAGCAGTG 284 Query 241 AGAACACACTTGAGGAACATGATCATTGTGCCTGAAATGATTGGAAGCATCATTGGTGTG 300 ||||| ||| | ||||||||| |||||||||||||||||||||||||| |||| ||||| Sbjct 285 AGAACCCACCTAAGGAACATGGTCATTGTGCCTGAAATGATTGGAAGCGTCATCGGTGTT 344 Query 301 TACAACGGAAAGACTTTTAACCAAGTCGAGATCAAGCCGGAGATGATTGGACATTACTTG 360 ||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||||| Sbjct 345 TACAATGGAAAGACTTTTAACCAAGTCGAGATCAAACCAGAGATGATTGGACATTACTTG 404 Query 361 GCTGAGTTCTCAATCTCATACAAACCGGTAAAGCACGGTAGGCCTGGTGTTGGTGCTACC 420 |||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||| Sbjct 405 GCTGAGTTCTCAATCTCATATAAGCCGGTTAAGCACGGTAGGCCTGGTGTTGGTGCTACC 464 Query 421 AATTCCTCCAGGTTTATCCCTCTCAAGTGA 450 |||||||||||||||||||||||||||||| Sbjct 465 AATTCCTCCAGGTTTATCCCTCTCAAGTGA 494 > Ahg940413 jgi|Araly1|940413|scaffold_600957.1 Length=578 Score = 516 bits (279), Expect = 6e-146 Identities = 397/453 (88%), Gaps = 12/453 (3%) Strand=Plus/Plus Query 4 GAACCAGAGGTTGTTGCGGCTGGAATTGTGAAAAAGAGAACCTTCAA-AAAGTTTTCTTT 62 ||||||||||||| || || ||| || ||||||||||| ||||| ||| || | || Sbjct 80 GAACCAGAGGTTGCAGCAGCAGGAGTTCCAAAAAAGAGAACGTTCAAGAAA-TTCGCCTT 138 Query 63 CAGAGGAGTCGATCTCGATGCGCTTCTCGACATGTCCATC-GAAGATCTTGTCAAACAT- 120 ||||||||||||||||||||| |||||||||||||| | | || ||||||||||| | | Sbjct 139 CAGAGGAGTCGATCTCGATGCTCTTCTCGACATGTCTA-CTGATGATCTTGTCAAGC-TC 196 Query 121 TTCAGTTCCCGTATTCGCAGAAGGTTTTCTAGAGGATTGACCAGAAAACCTATGGCTTTG 180 ||| |||||||||||| |||||||| |||||||||||||| ||||| |||||||||||| Sbjct 197 TTCTCTTCCCGTATTCGTAGAAGGTTCTCTAGAGGATTGACGAGAAAGCCTATGGCTTTG 256 Query 181 ATTAAGAAATTGCGCAAAGCGAAAATG-GAGGCACCAGCTGGTGAGAAGCCAGCATCAGT 239 ||||||||| | ||||| ||||||| | ||||||||||||||||||||||||| | |||| Sbjct 257 ATTAAGAAACTCCGCAAGGCGAAAA-GAGAGGCACCAGCTGGTGAGAAGCCAGAACCAGT 315 Query 240 GAGAACACACTTGAGGAACATGATCATTGTGCCTGAAATGATTGGAAGCATCATTGGTGT 299 |||||| ||| | ||||||||| ||||||||||||||||||||||||||||||| ||||| Sbjct 316 GAGAACCCACCTAAGGAACATGGTCATTGTGCCTGAAATGATTGGAAGCATCATCGGTGT 375 Query 300 GTACAACGGAAAGACTTTTAACCAAGTCGAGATCAAGCCGGAGATGATTGGACATTAC-T 358 |||||| ||||||||||| |||||||| ||||||||||| |||||||||||||||||| | Sbjct 376 GTACAATGGAAAGACTTTCAACCAAGTTGAGATCAAGCCTGAGATGATTGGACATTACCT 435 Query 359 TGGCTGAGTTCTCAATCTCATACAAACCGGTAAAGCACGGTAGGCCTGGTGTTGGTGCTA 418 || |||| ||||| ||||| ||||| || || |||||||||||||||||||||||||||| Sbjct 436 TG-CTGAATTCTCTATCTCGTACAAGCCAGTTAAGCACGGTAGGCCTGGTGTTGGTGCTA 494 Query 419 C-CAATTCCTCCAGGTTTATCCCTCTCAAGTGA 450 | || | |||||||||| ||||||||||||||| Sbjct 495 CTCACT-CCTCCAGGTTCATCCCTCTCAAGTGA 526 > Ahg470404 jgi|Araly1|470404|fgenesh2_kg.1__358__AT1G04270.1 Length=729 Score = 455 bits (246), Expect = 1e-127 Identities = 384/451 (85%), Gaps = 8/451 (2%) Strand=Plus/Plus Query 4 GAACCAGAGGTTGTTGCGGCTGGAATTGTGAAA-AAGAGAACCTTCAAAAAGTTTTCTTT 62 ||||||||||||| ||| ||||| | || ||| ||||| || || || |||||| | || Sbjct 99 GAACCAGAGGTTGCTGCTGCTGG-AGTGCCAAAGAAGAGGACGTTTAAGAAGTTTGCCTT 157 Query 63 CAGAGGAGTCGATCTCGATGCGCTTCTCGACATGTCCATC-GAAGATCTTGTCAAACAT- 120 ||||||||| ||||||||||| ||||| |||||||| | | || ||||||||||| | | Sbjct 158 CAGAGGAGTTGATCTCGATGCTCTTCTTGACATGTCTA-CTGATGATCTTGTCAAGC-TC 215 Query 121 TTCAGTTCCCGTATTCGCAGAAGGTTTTCTAGAGGATTGACCAGAAAACCTATGGCTTTG 180 ||| ||| ||||||||||||||||| |||||||| ||||| || || || |||||| || Sbjct 216 TTCTCTTCTCGTATTCGCAGAAGGTTCTCTAGAGGTTTGACGAGGAAGCCAATGGCTCTG 275 Query 181 ATTAAGAAATTGCGCAAAGCGAAAATGGAGGCACCAGC-TGGTGAGAAGCCAGCATCAGT 239 |||||||| || | |||||||||| |||||||||| | ||||||||||||| | | || Sbjct 276 ATTAAGAAGCTGAGGAAAGCGAAAAGGGAGGCACCA-CAAGGTGAGAAGCCAGAACCTGT 334 Query 240 GAGAACACACTTGAGGAACATGATCATTGTGCCTGAAATGATTGGAAGCATCATTGGTGT 299 |||||| ||||||||||||||| ||||||| ||||| |||||||||||||||||||| || Sbjct 335 GAGAACCCACTTGAGGAACATGGTCATTGTCCCTGAGATGATTGGAAGCATCATTGGAGT 394 Query 300 GTACAACGGAAAGACTTTTAACCAAGTCGAGATCAAGCCGGAGATGATTGGACATTACTT 359 ||||| || |||||||| |||||||||||||||||||| ||||||||||| || ||| | Sbjct 395 TTACAATGGTAAGACTTTCAACCAAGTCGAGATCAAGCCTGAGATGATTGGTCACTACCT 454 Query 360 GGCTGAGTTCTCAATCTCATACAAACCGGTAAAGCACGGTAGGCCTGGTGTTGGTGCTAC 419 |||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||| Sbjct 455 GGCTGAGTTCTCTATCTCATACAAGCCGGTCAAGCACGGTAGGCCTGGTGTTGGTGCTAC 514 Query 420 CAATTCCTCCAGGTTTATCCCTCTCAAGTGA 450 | | || ||||| || || ||||| |||||| Sbjct 515 CCACTCTTCCAGATTCATTCCTCTTAAGTGA 545 > Ahg497418 jgi|Araly1|497418|fgenesh2_kg.390__2__AT5G43640.1 Length=420 Score = 444 bits (240), Expect = 3e-124 Identities = 270/285 (95%), Gaps = 0/285 (0%) Strand=Plus/Plus Query 2 TGGAACCAGAGGTTGTTGCGGCTGGAATTGTGAAAAAGAGAACCTTCAAAAAGTTTTCTT 61 ||||||||||||||| ||||||||||||| ||||||||||||| ||||| |||||||||| Sbjct 11 TGGAACCAGAGGTTGCTGCGGCTGGAATTATGAAAAAGAGAACGTTCAAGAAGTTTTCTT 70 Query 62 TCAGAGGAGTCGATCTCGATGCGCTTCTCGACATGTCCATCGAAGATCTTGTCAAACATT 121 ||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |||| Sbjct 71 TCAGAGGAGTCGATCTCGATGCGCTTCTCGACATGTCCACCGATGATCTTGTCAAGCATT 130 Query 122 TCAGTTCCCGTATTCGCAGAAGGTTTTCTAGAGGATTGACCAGAAAACCTATGGCTTTGA 181 ||||| | ||| ||||||||||||| ||||||||||||||||| |||||||||||||||| Sbjct 131 TCAGTGCTCGTGTTCGCAGAAGGTTCTCTAGAGGATTGACCAGGAAACCTATGGCTTTGA 190 Query 182 TTAAGAAATTGCGCAAAGCGAAAATGGAGGCACCAGCTGGTGAGAAGCCAGCATCAGTGA 241 | ||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| Sbjct 191 TCAAGAAATTGCGCAAAGCGAAAATAGAGGCACCAGCTGGTGAGAAGCCAGCAGCAGTGA 250 Query 242 GAACACACTTGAGGAACATGATCATTGTGCCTGAAATGATTGGAA 286 ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 251 GAACACACTTGAGGAACATGATCATTGTGCCTGAAATGATTGGAA 295 Score = 198 bits (107), Expect = 2e-50 Identities = 119/125 (95%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 326 TCGAGATCAAGCCGGAGATGATTGGACATTACTTGGCTGAGTTCTCAATCTCATACAAAC 385 |||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||| Sbjct 296 TCGAGATCAAACCGGAGATGATTGGACATTACTTGGCTGAATTCTCAATCTCCTACAAAC 355 Query 386 CGGTAAAGCACGGTAGGCCTGGTGTTGGTGCTACCAATTCCTCCAGGTTTATCCCTCTCA 445 |||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 356 CGGTTAAGCATGGTAGGCCTGGTGTTGGTGCTACCAATTCCTCCAGGTTTATTCCTCTCA 415 Query 446 AGTGA 450 ||||| Sbjct 416 AGTGA 420 > Ahg892858 jgi|Araly1|892858|Al_scaffold_0006_854 Length=459 Score = 436 bits (236), Expect = 5e-122 Identities = 366/428 (86%), Gaps = 12/428 (3%) Strand=Plus/Plus Query 29 TTGTGAAAAAGAGAACCTTCAAAAAGTTTTCTTTCAGAGGAGTCGATCTCGATGCGCTTC 88 ||| ||| |||||||| |||||||||||||| |||| |||||||||||||||||| |||| Sbjct 38 TTGCGAAGAAGAGAACGTTCAAAAAGTTTTCCTTCAAAGGAGTCGATCTCGATGCTCTTC 97 Query 89 TCGACATGTCCATC-GAAGATCTTGTCAAACAT-TTCAGTTCCCGTATTCGCAGAAGGTT 146 | |||||| ||| | || ||||||||||| | | ||| | ||||||| | |||||| | Sbjct 98 TTGACATGCCCA-CTGATGATCTTGTCAAGC-TCTTCCCTGCCCGTATAAGAAGAAGGAT 155 Query 147 TTCTAGAGGATTGACCAGAAAACCTATGGCTTTGATTAAGAAATTGCGCAAAGCGAAAAT 206 |||||||||||| || || ||||||||| | || ||||||||||||||||||||| | Sbjct 156 GAGTAGAGGATTGACGAGGAAGCCTATGGCTCTCATCAAGAAATTGCGCAAAGCGAAATT 215 Query 207 GGAGGCACCAGCTGGTGAGAAGCCAGCA-TCAGTGAGAACACACT-TGAGGAACATGATC 264 || |||||||||||||||||||||| | | |||||||||||| | | ||||||||| | Sbjct 216 AGAAGCACCAGCTGGTGAGAAGCCAGAAGT-AGTGAGAACACA-TCTAAGGAACATGGTG 273 Query 265 ATTGTGCCTGAAATGATTGGAAGCATCATTGGTGTGTACAACGGAAAGACTTTTAACCAA 324 ||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 274 ATTATGCCTGAAATGATTGGAAGCATCATCGGTGTGTACAACGGAAAGACTTTTAACCAA 333 Query 325 GTCGAGATCAAGCCGGAGATGATTGGACATTAC-TTGGCTGAGTTCTCAATCTCATACAA 383 ||||||||||||| |||||||||||||||||| ||| |||| ||||| ||||| ||||| Sbjct 334 ATCGAGATCAAGCCTGAGATGATTGGACATTACCTTG-CTGAATTCTCTATCTCGTACAA 392 Query 384 ACCGGTAAAGCACGGTAGGCCTGGTGTTGGTGCTAC-CAATTCCTCCAGGTTTATCCCTC 442 || || |||||||| ||||| ||| |||||||| || | |||| ||||||||||||| Sbjct 393 GCCAGTTAAGCACGGCAGGCCCGGTCAAGGTGCTACACACT-CCTCTAGGTTTATCCCTC 451 Query 443 TCAAGTGA 450 |||||||| Sbjct 452 TCAAGTGA 459 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 16254280914 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5