BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G43640.1
Length=450
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494640 jgi|Araly1|494640|fgenesh2_kg.8__456__AT5G43640.1 708 0.0
Ahg487766 jgi|Araly1|487766|fgenesh2_kg.6__900__AT5G09500.1 595 7e-170
Ahg940413 jgi|Araly1|940413|scaffold_600957.1 516 6e-146
Ahg470404 jgi|Araly1|470404|fgenesh2_kg.1__358__AT1G04270.1 455 1e-127
Ahg497418 jgi|Araly1|497418|fgenesh2_kg.390__2__AT5G43640.1 444 3e-124
Ahg892858 jgi|Araly1|892858|Al_scaffold_0006_854 436 5e-122
> Ahg494640 jgi|Araly1|494640|fgenesh2_kg.8__456__AT5G43640.1
Length=459
Score = 708 bits (383), Expect = 0.0
Identities = 427/449 (95%), Gaps = 0/449 (0%)
Strand=Plus/Plus
Query 2 TGGAACCAGAGGTTGTTGCGGCTGGAATTGTGAAAAAGAGAACCTTCAAAAAGTTTTCTT 61
||||||||||||||| ||||||||||||| ||||||||||||| ||||| ||||||||||
Sbjct 11 TGGAACCAGAGGTTGCTGCGGCTGGAATTATGAAAAAGAGAACGTTCAAGAAGTTTTCTT 70
Query 62 TCAGAGGAGTCGATCTCGATGCGCTTCTCGACATGTCCATCGAAGATCTTGTCAAACATT 121
||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| ||||
Sbjct 71 TCAGAGGAGTCGATCTCGATGCGCTTCTCGACATGTCCACCGATGATCTTGTCAAGCATT 130
Query 122 TCAGTTCCCGTATTCGCAGAAGGTTTTCTAGAGGATTGACCAGAAAACCTATGGCTTTGA 181
||||| | ||| ||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 131 TCAGTGCTCGTGTTCGCAGAAGGTTCTCTAGAGGATTGACCAGGAAACCTATGGCTTTGA 190
Query 182 TTAAGAAATTGCGCAAAGCGAAAATGGAGGCACCAGCTGGTGAGAAGCCAGCATCAGTGA 241
| ||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct 191 TCAAGAAATTGCGCAAAGCGAAAATAGAGGCACCAGCTGGTGAGAAGCCAGCAGCAGTGA 250
Query 242 GAACACACTTGAGGAACATGATCATTGTGCCTGAAATGATTGGAAGCATCATTGGTGTGT 301
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 251 GAACACACTTGAGGAACATGATCATTGTGCCTGAAATGATTGGAAGTATCATTGGTGTGT 310
Query 302 ACAACGGAAAGACTTTTAACCAAGTCGAGATCAAGCCGGAGATGATTGGACATTACTTGG 361
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 311 ACAACGGAAAGACTTTTAACCAAGTCGAGATCAAACCGGAGATGATTGGACATTACTTGG 370
Query 362 CTGAGTTCTCAATCTCATACAAACCGGTAAAGCACGGTAGGCCTGGTGTTGGTGCTACCA 421
|||| ||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 371 CTGAATTCTCAATCTCCTACAAACCGGTTAAGCATGGTAGGCCTGGTGTTGGTGCTACCA 430
Query 422 ATTCCTCCAGGTTTATCCCTCTCAAGTGA 450
|||||||||||||||| ||||||||||||
Sbjct 431 ATTCCTCCAGGTTTATTCCTCTCAAGTGA 459
> Ahg487766 jgi|Araly1|487766|fgenesh2_kg.6__900__AT5G09500.1
Length=623
Score = 595 bits (322), Expect = 7e-170
Identities = 408/450 (91%), Gaps = 4/450 (1%)
Strand=Plus/Plus
Query 3 GGAACCAGAGGTTGTTGCGGCTGGAATTGTGAAAAAGAGAACCTTCAAAAAGTTTTCTTT 62
||| |||||||||| |||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 47 GGATCCAGAGGTTGCTGCGGCTGGAATCGTGAAAAAGAGAACGTTCAAAAAGTTTTCTTT 106
Query 63 CAGAGGAGTCGATCTCGATGCGCTTCTCGACATGTCCATC-GAAGATCTTGTCAAACAT- 120
||||||||| ||||| ||||| |||||||||||||| | | || ||||||||||| | |
Sbjct 107 CAGAGGAGTTGATCTTGATGCTCTTCTCGACATGTCTA-CTGATGATCTTGTCAAGC-TC 164
Query 121 TTCAGTTCCCGTATTCGCAGAAGGTTTTCTAGAGGATTGACCAGAAAACCTATGGCTTTG 180
||| ||||||||| || |||||||| |||||||||||||| || || ||||||||||||
Sbjct 165 TTCCCTTCCCGTATCCGTAGAAGGTTCTCTAGAGGATTGACGAGGAAGCCTATGGCTTTG 224
Query 181 ATTAAGAAATTGCGCAAAGCGAAAATGGAGGCACCAGCTGGTGAGAAGCCAGCATCAGTG 240
|| |||||| |||||||||||||||| || |||||||| || |||||||||||| |||||
Sbjct 225 ATCAAGAAACTGCGCAAAGCGAAAATTGAAGCACCAGCCGGAGAGAAGCCAGCAGCAGTG 284
Query 241 AGAACACACTTGAGGAACATGATCATTGTGCCTGAAATGATTGGAAGCATCATTGGTGTG 300
||||| ||| | ||||||||| |||||||||||||||||||||||||| |||| |||||
Sbjct 285 AGAACCCACCTAAGGAACATGGTCATTGTGCCTGAAATGATTGGAAGCGTCATCGGTGTT 344
Query 301 TACAACGGAAAGACTTTTAACCAAGTCGAGATCAAGCCGGAGATGATTGGACATTACTTG 360
||||| ||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 345 TACAATGGAAAGACTTTTAACCAAGTCGAGATCAAACCAGAGATGATTGGACATTACTTG 404
Query 361 GCTGAGTTCTCAATCTCATACAAACCGGTAAAGCACGGTAGGCCTGGTGTTGGTGCTACC 420
|||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||
Sbjct 405 GCTGAGTTCTCAATCTCATATAAGCCGGTTAAGCACGGTAGGCCTGGTGTTGGTGCTACC 464
Query 421 AATTCCTCCAGGTTTATCCCTCTCAAGTGA 450
||||||||||||||||||||||||||||||
Sbjct 465 AATTCCTCCAGGTTTATCCCTCTCAAGTGA 494
> Ahg940413 jgi|Araly1|940413|scaffold_600957.1
Length=578
Score = 516 bits (279), Expect = 6e-146
Identities = 397/453 (88%), Gaps = 12/453 (3%)
Strand=Plus/Plus
Query 4 GAACCAGAGGTTGTTGCGGCTGGAATTGTGAAAAAGAGAACCTTCAA-AAAGTTTTCTTT 62
||||||||||||| || || ||| || ||||||||||| ||||| ||| || | ||
Sbjct 80 GAACCAGAGGTTGCAGCAGCAGGAGTTCCAAAAAAGAGAACGTTCAAGAAA-TTCGCCTT 138
Query 63 CAGAGGAGTCGATCTCGATGCGCTTCTCGACATGTCCATC-GAAGATCTTGTCAAACAT- 120
||||||||||||||||||||| |||||||||||||| | | || ||||||||||| | |
Sbjct 139 CAGAGGAGTCGATCTCGATGCTCTTCTCGACATGTCTA-CTGATGATCTTGTCAAGC-TC 196
Query 121 TTCAGTTCCCGTATTCGCAGAAGGTTTTCTAGAGGATTGACCAGAAAACCTATGGCTTTG 180
||| |||||||||||| |||||||| |||||||||||||| ||||| ||||||||||||
Sbjct 197 TTCTCTTCCCGTATTCGTAGAAGGTTCTCTAGAGGATTGACGAGAAAGCCTATGGCTTTG 256
Query 181 ATTAAGAAATTGCGCAAAGCGAAAATG-GAGGCACCAGCTGGTGAGAAGCCAGCATCAGT 239
||||||||| | ||||| ||||||| | ||||||||||||||||||||||||| | ||||
Sbjct 257 ATTAAGAAACTCCGCAAGGCGAAAA-GAGAGGCACCAGCTGGTGAGAAGCCAGAACCAGT 315
Query 240 GAGAACACACTTGAGGAACATGATCATTGTGCCTGAAATGATTGGAAGCATCATTGGTGT 299
|||||| ||| | ||||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct 316 GAGAACCCACCTAAGGAACATGGTCATTGTGCCTGAAATGATTGGAAGCATCATCGGTGT 375
Query 300 GTACAACGGAAAGACTTTTAACCAAGTCGAGATCAAGCCGGAGATGATTGGACATTAC-T 358
|||||| ||||||||||| |||||||| ||||||||||| |||||||||||||||||| |
Sbjct 376 GTACAATGGAAAGACTTTCAACCAAGTTGAGATCAAGCCTGAGATGATTGGACATTACCT 435
Query 359 TGGCTGAGTTCTCAATCTCATACAAACCGGTAAAGCACGGTAGGCCTGGTGTTGGTGCTA 418
|| |||| ||||| ||||| ||||| || || ||||||||||||||||||||||||||||
Sbjct 436 TG-CTGAATTCTCTATCTCGTACAAGCCAGTTAAGCACGGTAGGCCTGGTGTTGGTGCTA 494
Query 419 C-CAATTCCTCCAGGTTTATCCCTCTCAAGTGA 450
| || | |||||||||| |||||||||||||||
Sbjct 495 CTCACT-CCTCCAGGTTCATCCCTCTCAAGTGA 526
> Ahg470404 jgi|Araly1|470404|fgenesh2_kg.1__358__AT1G04270.1
Length=729
Score = 455 bits (246), Expect = 1e-127
Identities = 384/451 (85%), Gaps = 8/451 (2%)
Strand=Plus/Plus
Query 4 GAACCAGAGGTTGTTGCGGCTGGAATTGTGAAA-AAGAGAACCTTCAAAAAGTTTTCTTT 62
||||||||||||| ||| ||||| | || ||| ||||| || || || |||||| | ||
Sbjct 99 GAACCAGAGGTTGCTGCTGCTGG-AGTGCCAAAGAAGAGGACGTTTAAGAAGTTTGCCTT 157
Query 63 CAGAGGAGTCGATCTCGATGCGCTTCTCGACATGTCCATC-GAAGATCTTGTCAAACAT- 120
||||||||| ||||||||||| ||||| |||||||| | | || ||||||||||| | |
Sbjct 158 CAGAGGAGTTGATCTCGATGCTCTTCTTGACATGTCTA-CTGATGATCTTGTCAAGC-TC 215
Query 121 TTCAGTTCCCGTATTCGCAGAAGGTTTTCTAGAGGATTGACCAGAAAACCTATGGCTTTG 180
||| ||| ||||||||||||||||| |||||||| ||||| || || || |||||| ||
Sbjct 216 TTCTCTTCTCGTATTCGCAGAAGGTTCTCTAGAGGTTTGACGAGGAAGCCAATGGCTCTG 275
Query 181 ATTAAGAAATTGCGCAAAGCGAAAATGGAGGCACCAGC-TGGTGAGAAGCCAGCATCAGT 239
|||||||| || | |||||||||| |||||||||| | ||||||||||||| | | ||
Sbjct 276 ATTAAGAAGCTGAGGAAAGCGAAAAGGGAGGCACCA-CAAGGTGAGAAGCCAGAACCTGT 334
Query 240 GAGAACACACTTGAGGAACATGATCATTGTGCCTGAAATGATTGGAAGCATCATTGGTGT 299
|||||| ||||||||||||||| ||||||| ||||| |||||||||||||||||||| ||
Sbjct 335 GAGAACCCACTTGAGGAACATGGTCATTGTCCCTGAGATGATTGGAAGCATCATTGGAGT 394
Query 300 GTACAACGGAAAGACTTTTAACCAAGTCGAGATCAAGCCGGAGATGATTGGACATTACTT 359
||||| || |||||||| |||||||||||||||||||| ||||||||||| || ||| |
Sbjct 395 TTACAATGGTAAGACTTTCAACCAAGTCGAGATCAAGCCTGAGATGATTGGTCACTACCT 454
Query 360 GGCTGAGTTCTCAATCTCATACAAACCGGTAAAGCACGGTAGGCCTGGTGTTGGTGCTAC 419
|||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 455 GGCTGAGTTCTCTATCTCATACAAGCCGGTCAAGCACGGTAGGCCTGGTGTTGGTGCTAC 514
Query 420 CAATTCCTCCAGGTTTATCCCTCTCAAGTGA 450
| | || ||||| || || ||||| ||||||
Sbjct 515 CCACTCTTCCAGATTCATTCCTCTTAAGTGA 545
> Ahg497418 jgi|Araly1|497418|fgenesh2_kg.390__2__AT5G43640.1
Length=420
Score = 444 bits (240), Expect = 3e-124
Identities = 270/285 (95%), Gaps = 0/285 (0%)
Strand=Plus/Plus
Query 2 TGGAACCAGAGGTTGTTGCGGCTGGAATTGTGAAAAAGAGAACCTTCAAAAAGTTTTCTT 61
||||||||||||||| ||||||||||||| ||||||||||||| ||||| ||||||||||
Sbjct 11 TGGAACCAGAGGTTGCTGCGGCTGGAATTATGAAAAAGAGAACGTTCAAGAAGTTTTCTT 70
Query 62 TCAGAGGAGTCGATCTCGATGCGCTTCTCGACATGTCCATCGAAGATCTTGTCAAACATT 121
||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| ||||
Sbjct 71 TCAGAGGAGTCGATCTCGATGCGCTTCTCGACATGTCCACCGATGATCTTGTCAAGCATT 130
Query 122 TCAGTTCCCGTATTCGCAGAAGGTTTTCTAGAGGATTGACCAGAAAACCTATGGCTTTGA 181
||||| | ||| ||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 131 TCAGTGCTCGTGTTCGCAGAAGGTTCTCTAGAGGATTGACCAGGAAACCTATGGCTTTGA 190
Query 182 TTAAGAAATTGCGCAAAGCGAAAATGGAGGCACCAGCTGGTGAGAAGCCAGCATCAGTGA 241
| ||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct 191 TCAAGAAATTGCGCAAAGCGAAAATAGAGGCACCAGCTGGTGAGAAGCCAGCAGCAGTGA 250
Query 242 GAACACACTTGAGGAACATGATCATTGTGCCTGAAATGATTGGAA 286
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct 251 GAACACACTTGAGGAACATGATCATTGTGCCTGAAATGATTGGAA 295
Score = 198 bits (107), Expect = 2e-50
Identities = 119/125 (95%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 326 TCGAGATCAAGCCGGAGATGATTGGACATTACTTGGCTGAGTTCTCAATCTCATACAAAC 385
|||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 296 TCGAGATCAAACCGGAGATGATTGGACATTACTTGGCTGAATTCTCAATCTCCTACAAAC 355
Query 386 CGGTAAAGCACGGTAGGCCTGGTGTTGGTGCTACCAATTCCTCCAGGTTTATCCCTCTCA 445
|||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 356 CGGTTAAGCATGGTAGGCCTGGTGTTGGTGCTACCAATTCCTCCAGGTTTATTCCTCTCA 415
Query 446 AGTGA 450
|||||
Sbjct 416 AGTGA 420
> Ahg892858 jgi|Araly1|892858|Al_scaffold_0006_854
Length=459
Score = 436 bits (236), Expect = 5e-122
Identities = 366/428 (86%), Gaps = 12/428 (3%)
Strand=Plus/Plus
Query 29 TTGTGAAAAAGAGAACCTTCAAAAAGTTTTCTTTCAGAGGAGTCGATCTCGATGCGCTTC 88
||| ||| |||||||| |||||||||||||| |||| |||||||||||||||||| ||||
Sbjct 38 TTGCGAAGAAGAGAACGTTCAAAAAGTTTTCCTTCAAAGGAGTCGATCTCGATGCTCTTC 97
Query 89 TCGACATGTCCATC-GAAGATCTTGTCAAACAT-TTCAGTTCCCGTATTCGCAGAAGGTT 146
| |||||| ||| | || ||||||||||| | | ||| | ||||||| | |||||| |
Sbjct 98 TTGACATGCCCA-CTGATGATCTTGTCAAGC-TCTTCCCTGCCCGTATAAGAAGAAGGAT 155
Query 147 TTCTAGAGGATTGACCAGAAAACCTATGGCTTTGATTAAGAAATTGCGCAAAGCGAAAAT 206
|||||||||||| || || ||||||||| | || ||||||||||||||||||||| |
Sbjct 156 GAGTAGAGGATTGACGAGGAAGCCTATGGCTCTCATCAAGAAATTGCGCAAAGCGAAATT 215
Query 207 GGAGGCACCAGCTGGTGAGAAGCCAGCA-TCAGTGAGAACACACT-TGAGGAACATGATC 264
|| |||||||||||||||||||||| | | |||||||||||| | | ||||||||| |
Sbjct 216 AGAAGCACCAGCTGGTGAGAAGCCAGAAGT-AGTGAGAACACA-TCTAAGGAACATGGTG 273
Query 265 ATTGTGCCTGAAATGATTGGAAGCATCATTGGTGTGTACAACGGAAAGACTTTTAACCAA 324
||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 274 ATTATGCCTGAAATGATTGGAAGCATCATCGGTGTGTACAACGGAAAGACTTTTAACCAA 333
Query 325 GTCGAGATCAAGCCGGAGATGATTGGACATTAC-TTGGCTGAGTTCTCAATCTCATACAA 383
||||||||||||| |||||||||||||||||| ||| |||| ||||| ||||| |||||
Sbjct 334 ATCGAGATCAAGCCTGAGATGATTGGACATTACCTTG-CTGAATTCTCTATCTCGTACAA 392
Query 384 ACCGGTAAAGCACGGTAGGCCTGGTGTTGGTGCTAC-CAATTCCTCCAGGTTTATCCCTC 442
|| || |||||||| ||||| ||| |||||||| || | |||| |||||||||||||
Sbjct 393 GCCAGTTAAGCACGGCAGGCCCGGTCAAGGTGCTACACACT-CCTCTAGGTTTATCCCTC 451
Query 443 TCAAGTGA 450
||||||||
Sbjct 452 TCAAGTGA 459
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 16254280914
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5