BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G43650.1
Length=899
Score E
Sequences producing significant alignments: (Bits) Value
Ahg497417 jgi|Araly1|497417|fgenesh2_kg.390__1__AT5G43650.1 1099 0.0
> Ahg497417 jgi|Araly1|497417|fgenesh2_kg.390__1__AT5G43650.1
Length=852
Score = 1099 bits (595), Expect = 0.0
Identities = 759/836 (91%), Gaps = 19/836 (2%)
Strand=Plus/Plus
Query 2 CACAAATCAAGATTGTCAAACACACTAAGAGAG-AAAGATGGATAACTTTTTTCTAGGTT 60
||||| |||| ||||||||||| |||||||||| ||||||||||||||| ||||||| ||
Sbjct 1 CACAACTCAAAATTGTCAAACAGACTAAGAGAGAAAAGATGGATAACTTCTTTCTAGATT 60
Query 61 TGAG-TTGTCAAGAAGAAAACAACTTCTGGGATCTAATCGTGGCCGACATCT-CGG---- 114
|| | |||||||||||| |||||||||||||||| ||| || ||||||| |||
Sbjct 61 TG-GTTTGTCAAGAAGACGACAACTTCTGGGATCTGATC--GG-AGACATCTCCGGTAAC 116
Query 115 G-TGATAGAAGCGTCAGTGTACCTATCAGAAGCGCCTTTAGGTCATATATGAAGGACACG 173
| ||| | |||||||||||| || | ||||||||||||||||||||| |||||| |||
Sbjct 117 GATGACAAAAGCGTCAGTGTGCCAAACAGAAGCGCCTTTAGGTCATACGTGAAGGGCACA 176
Query 174 GAAC-TGAGGATGATGTCGCCGAAGATATCTTCTTCGAAGGTGAACGTGAAGAAGAGAAT 232
|||| | | ||||||||||| |||| |||| ||||||||||||||||||||||||||
Sbjct 177 GAACAT-TTGTTGATGTCGCCGGGGATAACTTCATCGAAGGTGAACGTGAAGAAGAGAAT 235
Query 233 GGTCAATCTTCTGAGAAAGAATTGGGAGGAGAAGAAAAATACGGTGGCTCCAGAGAAGGA 292
||| |||||||| ||||||||||||||||||||||||||| ||||||| || || |||||
Sbjct 236 GGTGAATCTTCTAAGAAAGAATTGGGAGGAGAAGAAAAATGCGGTGGCGCCGGAAAAGGA 295
Query 293 AAGAAGCCGGCGACATATGTTGAAAGAAAGGACGAGAAGAGAGAAACAAAAACAGAGTTA 352
|||| |||| |||||||||||||||||||| ||||||||||||||||||||||||| |||
Sbjct 296 AAGATGCCGACGACATATGTTGAAAGAAAGAACGAGAAGAGAGAAACAAAAACAGAATTA 355
Query 353 CTTAGCTCTCCATTCTCTACTACCATTTGCCACTAAGAATGACAAAAATTCGATTGTCGA 412
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 356 CTTAGCTCTCCACTCTCTACTACCATTTGCCACTAAGAATGACAAAAATTCGATTGTTGA 415
Query 413 AAAAGCCGTGGATGAGATTGCGAAATTACAAAGATTAAAGAAAGAACTAGTGAGAAGAAT 472
|||||||||||||||||||| |||| |||||||||||||||||||||||| || ||||||
Sbjct 416 AAAAGCCGTGGATGAGATTGGGAAACTACAAAGATTAAAGAAAGAACTAGAGAAAAGAAT 475
Query 473 TAAAGTGATTGAGGAAAAATCAGCAAAGGATGGTCATGATGAA-ATGAGTGAAACAAAGG 531
|||||||||||||||||||||||||||||||| ||||||| || |||||||||||||| |
Sbjct 476 TAAAGTGATTGAGGAAAAATCAGCAAAGGATGATCATGAT-AATATGAGTGAAACAAAAG 534
Query 532 TTAGGGTTAATCTAAAAGAACCTTTGTCTGGACTAGATTCAATGCTTGAAGCGCTTCATT 591
||||| |||||||| ||||||||||||||||||| || ||||||||||||| |||||||
Sbjct 535 TTAGGTTTAATCTACAAGAACCTTTGTCTGGACTCGACTCAATGCTTGAAGTTCTTCATT 594
Query 592 ATCTTAAATCAATGGGAACAAAACTGAAAACAGTCCATGCCAATTTCTCTCCTCAAGAGT 651
||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 595 ATCTTAAATCAATGGGAACAAAACTTAAAACAGTCCACGCCAATTTCTCTCCTCAAGAGT 654
Query 652 TTTCTGCGACCATGACCATCGAGACTCAGATTAGAGGAGAGGAGGTTGAAAAGAGAGTGG 711
||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||
Sbjct 655 TTTCTGCGACCATGAACATCGAGACTCAGATTAGAGGAGAAGAGGTTGAAAAGAGAGTGG 714
Query 712 AAAGAAGACTCCAGGAAACTGAATGGAAACTTCTCTTTCTCCCAGAAGCTTCCTTTTACA 771
| |||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 715 AGAGAAGACTCCAGGAAAATGAATGGAAACTTCTCTTTCTCCCAGAAGCTTCCTGTTACA 774
Query 772 AAGACTACTAATTCTGTTGACTTTCTGTCATTAATTTTCTTTTGTATTTAAATTTG 827
||||||| | || ||||||||||||||||||||||||||||||| ||||||||||
Sbjct 775 AAGACTA--A-TTGTGTTGACTTTCTGTCATTAATTTTCTTTTGTTTTTAAATTTG 827
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33319429458
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5