BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G43670.1
Length=2850
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494637 jgi|Araly1|494637|fgenesh2_kg.8__453__AT5G43670.1 4329 0.0
> Ahg494637 jgi|Araly1|494637|fgenesh2_kg.8__453__AT5G43670.1
Length=2787
Score = 4329 bits (2344), Expect = 0.0
Identities = 2665/2816 (95%), Gaps = 37/2816 (1%)
Strand=Plus/Plus
Query 15 ATCAAAGAATGTTTTCTAATCCTTCGCCGGCCGGaaaaaaaTCTACAAACTCCGGCGATA 74
||||||||||||||||| || |||||||||||||||||||||||||||||||||| || |
Sbjct 1 ATCAAAGAATGTTTTCTGATTCTTCGCCGGCCGGAAAAAAATCTACAAACTCCGGTGA-A 59
Query 75 CCCTCTACTCCGATTCTCACTTCCCCGAGAAACCAAATCAAACTTGATCTGAGAATCTTC 134
|| || || | || | |||| | ||| ||||||||||||||||||||||
Sbjct 60 ------AC-CC--TT-T-AC-T--CCGA-TTA--AAA-CAAACTTGATCTGAGAATCTTC 101
Query 135 AACAACACTTTCAGATCCATGAAAACGGATTTGAAAATCCCCAATCAGTGAAATCGAAGA 194
| |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 102 ATCAACACTTTCAGATCCATGAAAACGGATTTGAAAATCCACAATCAGTAAAATCGAAGA 161
Query 195 TCTAGTTATGGATTTCTTAGAGCTAGAAGCGATCGAAGGATTAAGATGGTCATGGAACTC 254
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 162 TCTAGTTATGGATTTCTTAGAGCTAGAAGCGATCGAAGGTTTAAGATGGTCATGGAACTC 221
Query 255 ATGGCCAACTACAAAATCCGATTGCGAATCTCTCGTTGTTCCATTAAGTATCATGTATAC 314
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 222 ATGGCCAACTACAAAATCCGATTGCGAATCTCTCGTTGTTCCATTAAGTATCATGTATAC 281
Query 315 TCCATTGATGCACTTCTCTGAGCTTCCAACGATTCCTTATGATCCATTGATTTGTTCTCG 374
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 282 TCCATTGATGCAATTCTCTGAGCTTCCAACGATTCCTTATGATCCATTGATTTGTTCTCG 341
Query 375 TTGTGGAGCTGTGTTAAACCCTTACGCTCGTGTTGATTACCAATCTCGAATCTGGTCTTG 434
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 342 TTGTGGAGCTGTGTTAAACCCTTACGCTCGTGTTGATTATCAATCTCGAATCTGGTCTTG 401
Query 435 TCCCTTTTGTTTTCACAAAAACCTTTTCCCTCGTTCTTACTCCGGAATCACTGAAACTAA 494
||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 402 TCCCTTTTGCTTTCACAAAAACCTTTTCCCTCGTTCTTACTCTGGAATCACTGAAACTAA 461
Query 495 TCTCCCGGCGGAGCTTTTTCCGACTTATAGCGCCGTTGAATACTCTCCGCTACCGTCGCG 554
||||||||||||||||||||||||||||||||| |||||||||||||||| | | ||||
Sbjct 462 TCTCCCGGCGGAGCTTTTTCCGACTTATAGCGCTGTTGAATACTCTCCGCCGCTGCCGCG 521
Query 555 TCAA-TCGGGTTCAAATACGACGACTCCGACGGCTGCTGCGAGTTGGAGTAATGGGTTTA 613
| || ||||||||| |||||||||||||| |||| || ||||||||||||||||||||
Sbjct 522 T-AAGTCGGGTTCAGCGACGACGACTCCGACTGCTGGTGGGAGTTGGAGTAATGGGTTTA 580
Query 614 ATCAAGGGGTTAGATCAATGCCTTCGAATTCGTCTTTTTCTTCTCTTGCTTCTTCTACTG 673
|||||||| ||||||||||| ||||||||||||| ||||| ||||||||||| | | |||
Sbjct 581 ATCAAGGGCTTAGATCAATGTCTTCGAATTCGTCATTTTCGTCTCTTGCTTC-T-T-CTG 637
Query 674 TTGGAGGTGGTGGTGGTGTGATTAGTGAGCTTGGACCTGCGTTTGTGTTTGTTGTTGATG 733
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 638 TTGGAGGTGGTGGTGGTGTGATTAGTGAGCTTGGACCTGCGTTTGTGTTTGTTGTTGATG 697
Query 734 CTTCTATGGTTGAGGATGAGTTAAGAGCTGTGCGGAGTGATG-TTTTGTTTGTTATTGAA 792
| |||||||| ||||||||||||||||||||| | ||||| | |||||||||| |||||
Sbjct 698 CGTCTATGGTGGAGGATGAGTTAAGAGCTGTGAGAAGTGA-GCTTTTGTTTGTGATTGAG 756
Query 793 CAGTTGCCTGAGAATTGCTTGGTGGCTTTGATTACTTTTGATTCTATGGTTAGGGTTTAT 852
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 757 CAGTTGCCTGAGAATTGTTTGGTGGCTTTGATTACTTTTGATTCTATGGTTAGGGTTTAT 816
Query 853 GATTTGGGTTTCTCTGAATGCTCTAAAGTTGTTGTCTTTCATGGTGAACGTGACCTTTCT 912
||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||
Sbjct 817 GATTTGGGTTTCTCTGAATGCTCTAAAGTTGTTGTTTTTCATGGTGAGCGTGATCTTTCT 876
Query 913 CCAGACCAGATACAACAATTTCTCGGACTTGGATATTCTAAGCAGTTTCATCATGGAAAG 972
||||||||||||||||||||||| |||||||||||||| |||||| ||||||||||||||
Sbjct 877 CCAGACCAGATACAACAATTTCTGGGACTTGGATATTCGAAGCAGCTTCATCATGGAAAG 936
Query 973 ATGTCAGCGATTCGAAAGCAAAGTTTCTTGCTTCCGTTGGTGGAATGTGAGTTTAACTTA 1032
|||||||||||||| |||||||||||||| |||||||||| |||||||||||||||||||
Sbjct 937 ATGTCAGCGATTCGGAAGCAAAGTTTCTTACTTCCGTTGGCGGAATGTGAGTTTAACTTA 996
Query 1033 ACATCTGCGTTTGAAGAAATCATTCCCTTGGTTGATGTCAAACCAGGTCATCGGCCTCAT 1092
|||| ||||||||||||||| |||||||||||||||||||||| |||||||||||||||
Sbjct 997 ACATGTGCGTTTGAAGAAATTGTTCCCTTGGTTGATGTCAAACCGGGTCATCGGCCTCAT 1056
Query 1093 AGGTCAACTGGTGCTGCGATCTCAACAGCATTAGGACTGCTCGAGGGATGTTCTGTAACC 1152
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1057 AGGTCAACCGGTGCTGCGATCTCAACAGCATTGGGACTGCTCGAGGGATGTTCTGTAACC 1116
Query 1153 ACTGGTTCTCGGATTATGGTTTTCACATCGGGGCCTGCTACAAGAGGCCCTGGGATCATC 1212
|| ||||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 1117 ACGGGTTCTCGGATTATGGTTTTCACATCGGGGCTTACTACAAGAGGCCCTGGGATCATT 1176
Query 1213 GTGGACTCTGATTTAAGTAATTCGATCAGAACTCACAGGGATATTATCACTGGTCACGTG 1272
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 1177 GTGGACTCTGATTTAAGTAATTCGATCAGAACTCACAGAGATATTATCACTGGTCAGGTG 1236
Query 1273 TCTTATTACGATAAATCTTGCGGGTTTTACAAGAAACTAGCGAAGAGGCTCTGTGATTCG 1332
||||||||||||||||||||||||||||||||||||||||| || ||||| || ||| ||
Sbjct 1237 TCTTATTACGATAAATCTTGCGGGTTTTACAAGAAACTAGCAAAAAGGCTATGCGATACG 1296
Query 1333 TCCGTTGTTCTCGATGTGTTCGCTTGCTCTCTTGACCAAGTTGGAGCAGCGGAACTGAGA 1392
|| | || ||| |||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1297 TCTGCTGCTCTAGATGTGTTCGCTTGCTCTCTTGACCAAGTTGGAGCAGCGGAAATGAGA 1356
Query 1393 TACGCAGTGGAAATGTCTGGTGGATTTCTCTTACTGGGAGAGACATTTGAATCCGAGCAA 1452
|| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1357 TATGCAGTGGAAATGTCTGGTGGATTTCTCTTACTGGGAGAGACATTTGAGTCCGAGCAA 1416
Query 1453 TTCAAAAAATGTCTGAGACATATATTCATCCGCGATGCAGATGGGAACCTGAGTATGTAC 1512
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1417 TTCAAAAAATGTCTCAGACATATATTCATCCGCGATGCAGATGGGAACCTGAGTATGTAC 1476
Query 1513 TTTGATGTGTCTTTGGAAGTTGTGACGACTAAGGATATGAGAATCTGCGGCGCACTTGGT 1572
|||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 1477 TTTGATGTGTCTTTAGAAGTTGTGACGACTAAGGATATGAGAATCTGCGGTGCACTCGGT 1536
Query 1573 CCGGTTGTGTCGCTAAGACAGAAGAACGATATAGTGAGCGAAACAGAGATCGGTGAAGGC 1632
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1537 CCGGTTGTGTCGCTAAGACAGAAGAACGATATAGTGAGCGAAACAGAGATTGGTGAAGGC 1596
Query 1633 GGAACATATATGTGGAAAACGAGCACTGTCACGAATAAGACTTGTGTTTCATTCTTCTTT 1692
||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||
Sbjct 1597 GGAACATATATGTGGAAAACGAGCACTGTCACGAATAAGACATGTGTGTCATTCTTGTTT 1656
Query 1693 CATGTGAGCAACGAACAGAATCGAAAACCGCAGCCAGGTTCTGCGTTCTTCATTCAGTTC 1752
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 1657 CATGTGAGCAACGAACAGAATCGAAAACCGCAGCCTGGTTCCGCGTTCTTCATTCAGTTC 1716
Query 1753 ATTACTCGGTATCGGTATGGAAATGGAGCAATGAGGAAACGGGTTACAACGGTTGCTAGG 1812
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1717 ATTACTCGGTATCGGTATGGAAATGGAGGAATGAGGAAACGGGTTACAACGGTTGCTAGA 1776
Query 1813 AGATGGGTTGCTGGTAAATCGCCAGAAATCTCGTCAAGTTTTGATCAAGAAACAGCTGCG 1872
|||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1777 AGATGGGTTGCTGGAAAATCGCCAGAAATCTCGTCAGGTTTTGATCAAGAAACAGCTGCT 1836
Query 1873 TCAGTTATGGCGCGGCTTGCAATTAACCGAGCAGAGGAGTGTCACGCTAGAGACGTTATT 1932
|||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct 1837 TCAGTTATGGCGCGGCTTGCAATTAACCGAGCAGAGGAGTGTTACGCAAGAGACGTTATT 1896
Query 1933 ACGTGGTTAGATAACGGTTTAATCCGGTTTGCTTCACGGTTTGGAGATTATATTCAAGAA 1992
| |||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1897 AGGTGGTTAGATGACGGTTTAATCCGCTTTGCTTCACGGTTTGGAGATTATATTCAAGAA 1956
Query 1993 GATCCATCTTCTTTCAGGTTGACTCCAAACTTCTCCCTTTATCCTCAGTTCATGTTCTAT 2052
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1957 GATCCATCTTCTTTCAGGTTGACTCCAAACTTCTCCCTTTATCCTCAGTTCATGTTCTAT 2016
Query 2053 CTACGAAGATCACAGTTTCTTGACGTCTTCAACAATTCCCCGGATGAAACCGGTTTCTTC 2112
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2017 CTACGAAGATCACAGTTTCTTGACGTCTTCAACAATTCCCCGGATGAAACCGGTTTTTTC 2076
Query 2113 CGGTTAATGTTAAACCGGGAAGGAGTGGTAAACTCAATCATCATGATTCAACCAACGCTT 2172
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2077 CGGTTAATGTTAAACCGGGAAGGAGTGGTAAACTCAATCATCATGATTCAACCAACGCTT 2136
Query 2173 CTCCGGTATTCATTCGACGGACCACCGGTTCCAGTCCTCCTCGATATCCGGTCAGTGACT 2232
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 2137 CTCCGGTATTCATTCGACGGACCGCCCGTTCCAGTCCTCCTCGATATCCGGTCAGTGACT 2196
Query 2233 CCAGACGTAATTTTGCTATTTGATTCATACTTCTACGTGGTTATCCACCATGGATCAAAA 2292
|||| || ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 2197 GCAGATGTGATTTTGCTATTCGATTCATACTTCTACGTGGTTATCCACCATGGATCAAAA 2256
Query 2293 ATCGCCCAATGGAGGAAACTTGAGTATCATAAAGATCCATCCCACGAGACTTTCCGGAAC 2352
|||||||||||||||||||| |||||||||||||| ||| |||||||||||||||||||
Sbjct 2257 ATCGCCCAATGGAGGAAACTCGAGTATCATAAAGACCCAAGCCACGAGACTTTCCGGAAC 2316
Query 2353 CTTCTGGAAGCACCGGAAATCGATGCAGCGCAGTTAGTAACTGATCGGATTCCAATGCCA 2412
|||||||||||||| ||||||||||| ||||||||||| |||||| ||||||||||||||
Sbjct 2317 CTTCTGGAAGCACCAGAAATCGATGCGGCGCAGTTAGTGACTGATAGGATTCCAATGCCA 2376
Query 2413 CGGATTGTACGGTGTGACCAGCACGGTAGTCAAGCTCGGTTTCTTCTTGCCAAGCTCAAT 2472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2377 CGGATTGTACGGTGTGACCAGCACGGTAGTCAAGCTCGGTTTCTTCTTGCCAAGCTCAAT 2436
Query 2473 CCTTCAGTAACTCAGAAAACAGATCATACCGGTGGTTCAGATATTGTTCTCACTGATGAT 2532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2437 CCTTCAGTAACTCAGAAAACAGATCATACCGGTGGTTCAGATATTGTTCTCACTGATGAT 2496
Query 2533 ATGAGTCTTCAAGATTTCCTAGAAGATTTGCAATCTCTGGCAGTGAAAGGCT-AGGAAAT 2591
||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 2497 TTGAGTCTTCAAGATTTCCTAGAAGATTTGCAATCTCTGGCAGTGAAAGGCTGAG-AAAT 2555
Query 2592 GTGGCAGCAAACCTGTAAAATTGGTTTGGATTTT-AATCGGTACAGGTAATGGTTTTGAC 2650
||||||||||||||||||| ||||||||| |||| ||||||||| |||||||||||||||
Sbjct 2556 GTGGCAGCAAACCTGTAAA-TTGGTTTGG-TTTTGAATCGGTACTGGTAATGGTTTTGAC 2613
Query 2651 TAATTGGGTTAT-ACAAACAATTAATATTGGTATTT-AGTCATTATCTACACCT-TATAT 2707
|| ||||||| | || ||||||| |||||||||||| |||||| |||||||||| | |||
Sbjct 2614 TAGTTGGGTT-TCACGAACAATTGATATTGGTATTTTAGTCATCATCTACACCTGT-TAT 2671
Query 2708 TGTCAGGTTTTCTGAATCTTAT-AGATTGATATGGAAATTCTAAATGTATGATTTGGTTT 2766
||| |||||||||||||||| | ||||||| |||||||||| ||||||||||||||||||
Sbjct 2672 TGTTAGGTTTTCTGAATCTTTTTAGATTGAAATGGAAATTCGAAATGTATGATTTGGTTT 2731
Query 2767 GGACCTGATTTGTTATACAGAAAGGTTTTGATCTTTGTGAACACTACTGTAATTGT 2822
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2732 GGACCTGATTTATTATACAGAAAGGTTTTGATCTTTGTGAACACTACTGTAATTGT 2787
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 107566851880
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5