BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G43680.1
Length=1142
Score E
Sequences producing significant alignments: (Bits) Value
Ahg331037 jgi|Araly1|331037|fgenesh1_pm.C_scaffold_8000380 1068 0.0
Ahg922937 jgi|Araly1|922937|scaffold_104218.1 117 2e-25
> Ahg331037 jgi|Araly1|331037|fgenesh1_pm.C_scaffold_8000380
Length=756
Score = 1068 bits (578), Expect = 0.0
Identities = 697/752 (93%), Gaps = 17/752 (2%)
Strand=Plus/Plus
Query 46 ATGCTTGGGCTTTCTTACGGTGAGCTCTTACTCATCGTCGGCGCCACAGCTGCTCTTGTA 105
|||||||||||||||||||||||||||||||||||| |||| |||||||||||| |||||
Sbjct 1 ATGCTTGGGCTTTCTTACGGTGAGCTCTTACTCATCATCGGTGCCACAGCTGCTGTTGTA 60
Query 106 GGACCCAAGGATCTTCCGATTATTGCTAGAGCAGGAGGAAGATTATTCGGACGAGCCATT 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GGACCCAAGGATCTTCCGATTATTGCTAGAGCAGGAGGAAGATTATTCGGACGAGCCATT 120
Query 166 GGTTACATCAATATGGCTCGTGGTCACTTGGATGGTGTCATGAAACAACCTCAGATGCAA 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GGTTACATCAATATGGCTCGTGGTCACTTGGATGGTGTCATGAAACAACCTCAGATGCAA 180
Query 226 GAGATATCGAAAGAAGTTCAAGATTTACGAGCACAAGTAGATGCGATTAGCCATGGAGCA 285
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 181 GAGATATCGAAAGAAGTTCAAGATTTACGAGCACAAGTAGACGCGATTAGCCATGGAGCT 240
Query 286 AGATTTTCTCTATTTGATTCTAGTCCTTTGACTCGAAGAGTGGATAACCAAAAAACTCAA 345
|| |||||| ||||||||||||||||||||||||||||||| || ||||||| ||| |
Sbjct 241 AGGTTTTCTTTATTTGATTCTAGTCCTTTGACTCGAAGAGTAGACAACCAAA---CTCCA 297
Query 346 GAACCTAGTCCAAGCACCACCAATGGGATTGTTACATCCGTTAATGTTGAAGAAAAACAG 405
|||||||||||||||||||||||||||| ||||||||| |||||||||||||||| ||||
Sbjct 298 GAACCTAGTCCAAGCACCACCAATGGGAATGTTACATCGGTTAATGTTGAAGAAAGACAG 357
Query 406 AAGCCTGTAGATCATTATACAAAGGCTCAAGAATTTAGTGGCTCGTCGTCAGCTTCTGTT 465
|||||||||||||||||||||||||| |||||||||||||||||||| || | ||| |||
Sbjct 358 AAGCCTGTAGATCATTATACAAAGGCGCAAGAATTTAGTGGCTCGTCTTCGGGTTCGGTT 417
Query 466 AACCTGCACGCTCAAGCAACATCATTTGCACGATTATCTGAGACAGTCAATGGAAAAACT 525
|||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct 418 AACCTGCACGCTCAAGCAACATCATTTGCACGATTATCTGAGACGGTCAGTGGAAAAAC- 476
Query 526 CA-CAGTCTAAACAGTGATTCACCTGTTCTTCCAGTATCAGCTGAGATGGCAAAGTTGCT 584
|| || ||||| ||| ||||||||||||||||| || |||||||||||||||||||||||
Sbjct 477 CAACACTCTAATCAGCGATTCACCTGTTCTTCCTGTTTCAGCTGAGATGGCAAAGTTGCT 536
Query 585 TCCTCAACGCAAAGAGAGTGCAAGAGGATCTGATTTAATGTTAGAGGCGGTTCTTGAAGC 644
||||||||||||||||||||||| |||||||||||||||||| ||||| |||||||||||
Sbjct 537 TCCTCAACGCAAAGAGAGTGCAAAAGGATCTGATTTAATGTTGGAGGCAGTTCTTGAAGC 596
Query 645 GGAAGTAGCACACAAGGCGAAAAGCTTTTTCGCACAAGCCGAGAAAGAAACTCCAGCTTT 704
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 597 GGAAGTAGCACACAAGGCAAAAAGCTTTTTCGCACAAGCCGAAAAAGAAACTCCAGCTTT 656
Query 705 GAAAG-G--G-A---A-GTTTTTCAGTGACAGGAAAGGAGAAAATTGAACTCAAAAGTTT 756
|||| | | | | ||||||||||||| |||||||||||| ||||| ||| ||||
Sbjct 657 AAAAGTGTTGCAGGGAAGTTTTTCAGTGACGGGAAAGGAGAAAGTTGAAGGCAA--GTTT 714
Query 757 TGGGGACCATCA-T-CGATCACAAGACACCGG 786
|||||| | || | |||||||||||||||||
Sbjct 715 TGGGGATCTTCTCTTCGATCACAAGACACCGG 746
> Ahg922937 jgi|Araly1|922937|scaffold_104218.1
Length=211
Score = 117 bits (63), Expect = 2e-25
Identities = 86/96 (90%), Gaps = 5/96 (5%)
Strand=Plus/Plus
Query 425 CAAAGGCTCAAGAATTTAGTGGCTCGTCGTCAGCTTCTGTTAACCTGCACGCTCAAGCAA 484
||| ||||||||||||||||||||| | | ||||| ||||||||||||||||||||||
Sbjct 19 CAATGGCTCAAGAATTTAGTGGCTC-T--TTGGCTTCAGTTAACCTGCACGCTCAAGCAA 75
Query 485 CATCATTTGCACGATTATCTGAGACAG-TCAATGGA 519
||||||||||||||||||||||||| | | ||||||
Sbjct 76 CATCATTTGCACGATTATCTGAGACGGAT-AATGGA 110
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42583298289
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5