BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G43680.1 Length=1142 Score E Sequences producing significant alignments: (Bits) Value Ahg331037 jgi|Araly1|331037|fgenesh1_pm.C_scaffold_8000380 1068 0.0 Ahg922937 jgi|Araly1|922937|scaffold_104218.1 117 2e-25 > Ahg331037 jgi|Araly1|331037|fgenesh1_pm.C_scaffold_8000380 Length=756 Score = 1068 bits (578), Expect = 0.0 Identities = 697/752 (93%), Gaps = 17/752 (2%) Strand=Plus/Plus Query 46 ATGCTTGGGCTTTCTTACGGTGAGCTCTTACTCATCGTCGGCGCCACAGCTGCTCTTGTA 105 |||||||||||||||||||||||||||||||||||| |||| |||||||||||| ||||| Sbjct 1 ATGCTTGGGCTTTCTTACGGTGAGCTCTTACTCATCATCGGTGCCACAGCTGCTGTTGTA 60 Query 106 GGACCCAAGGATCTTCCGATTATTGCTAGAGCAGGAGGAAGATTATTCGGACGAGCCATT 165 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 GGACCCAAGGATCTTCCGATTATTGCTAGAGCAGGAGGAAGATTATTCGGACGAGCCATT 120 Query 166 GGTTACATCAATATGGCTCGTGGTCACTTGGATGGTGTCATGAAACAACCTCAGATGCAA 225 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 GGTTACATCAATATGGCTCGTGGTCACTTGGATGGTGTCATGAAACAACCTCAGATGCAA 180 Query 226 GAGATATCGAAAGAAGTTCAAGATTTACGAGCACAAGTAGATGCGATTAGCCATGGAGCA 285 ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 181 GAGATATCGAAAGAAGTTCAAGATTTACGAGCACAAGTAGACGCGATTAGCCATGGAGCT 240 Query 286 AGATTTTCTCTATTTGATTCTAGTCCTTTGACTCGAAGAGTGGATAACCAAAAAACTCAA 345 || |||||| ||||||||||||||||||||||||||||||| || ||||||| ||| | Sbjct 241 AGGTTTTCTTTATTTGATTCTAGTCCTTTGACTCGAAGAGTAGACAACCAAA---CTCCA 297 Query 346 GAACCTAGTCCAAGCACCACCAATGGGATTGTTACATCCGTTAATGTTGAAGAAAAACAG 405 |||||||||||||||||||||||||||| ||||||||| |||||||||||||||| |||| Sbjct 298 GAACCTAGTCCAAGCACCACCAATGGGAATGTTACATCGGTTAATGTTGAAGAAAGACAG 357 Query 406 AAGCCTGTAGATCATTATACAAAGGCTCAAGAATTTAGTGGCTCGTCGTCAGCTTCTGTT 465 |||||||||||||||||||||||||| |||||||||||||||||||| || | ||| ||| Sbjct 358 AAGCCTGTAGATCATTATACAAAGGCGCAAGAATTTAGTGGCTCGTCTTCGGGTTCGGTT 417 Query 466 AACCTGCACGCTCAAGCAACATCATTTGCACGATTATCTGAGACAGTCAATGGAAAAACT 525 |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| Sbjct 418 AACCTGCACGCTCAAGCAACATCATTTGCACGATTATCTGAGACGGTCAGTGGAAAAAC- 476 Query 526 CA-CAGTCTAAACAGTGATTCACCTGTTCTTCCAGTATCAGCTGAGATGGCAAAGTTGCT 584 || || ||||| ||| ||||||||||||||||| || ||||||||||||||||||||||| Sbjct 477 CAACACTCTAATCAGCGATTCACCTGTTCTTCCTGTTTCAGCTGAGATGGCAAAGTTGCT 536 Query 585 TCCTCAACGCAAAGAGAGTGCAAGAGGATCTGATTTAATGTTAGAGGCGGTTCTTGAAGC 644 ||||||||||||||||||||||| |||||||||||||||||| ||||| ||||||||||| Sbjct 537 TCCTCAACGCAAAGAGAGTGCAAAAGGATCTGATTTAATGTTGGAGGCAGTTCTTGAAGC 596 Query 645 GGAAGTAGCACACAAGGCGAAAAGCTTTTTCGCACAAGCCGAGAAAGAAACTCCAGCTTT 704 |||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| Sbjct 597 GGAAGTAGCACACAAGGCAAAAAGCTTTTTCGCACAAGCCGAAAAAGAAACTCCAGCTTT 656 Query 705 GAAAG-G--G-A---A-GTTTTTCAGTGACAGGAAAGGAGAAAATTGAACTCAAAAGTTT 756 |||| | | | | ||||||||||||| |||||||||||| ||||| ||| |||| Sbjct 657 AAAAGTGTTGCAGGGAAGTTTTTCAGTGACGGGAAAGGAGAAAGTTGAAGGCAA--GTTT 714 Query 757 TGGGGACCATCA-T-CGATCACAAGACACCGG 786 |||||| | || | ||||||||||||||||| Sbjct 715 TGGGGATCTTCTCTTCGATCACAAGACACCGG 746 > Ahg922937 jgi|Araly1|922937|scaffold_104218.1 Length=211 Score = 117 bits (63), Expect = 2e-25 Identities = 86/96 (90%), Gaps = 5/96 (5%) Strand=Plus/Plus Query 425 CAAAGGCTCAAGAATTTAGTGGCTCGTCGTCAGCTTCTGTTAACCTGCACGCTCAAGCAA 484 ||| ||||||||||||||||||||| | | ||||| |||||||||||||||||||||| Sbjct 19 CAATGGCTCAAGAATTTAGTGGCTC-T--TTGGCTTCAGTTAACCTGCACGCTCAAGCAA 75 Query 485 CATCATTTGCACGATTATCTGAGACAG-TCAATGGA 519 ||||||||||||||||||||||||| | | |||||| Sbjct 76 CATCATTTGCACGATTATCTGAGACGGAT-AATGGA 110 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 42583298289 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5